Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06524

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06523 and MPMX19_06524 are separated by 23 nucleotidesMPMX19_06524 and MPMX19_06525 are separated by 2 nucleotides MPMX19_06523: MPMX19_06523 - hypothetical protein, at 307,980 to 310,343 _06523 MPMX19_06524: MPMX19_06524 - hypothetical protein, at 310,367 to 311,845 _06524 MPMX19_06525: MPMX19_06525 - Adenine deaminase, at 311,848 to 313,527 _06525 Position (kb) 310 311 312Strain fitness (log2 ratio) -2 -1 0 1at 309.382 kb on - strand, within MPMX19_06523at 309.382 kb on - strand, within MPMX19_06523at 309.382 kb on - strand, within MPMX19_06523at 309.382 kb on - strand, within MPMX19_06523at 309.705 kb on + strand, within MPMX19_06523at 309.705 kb on + strand, within MPMX19_06523at 309.705 kb on + strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.822 kb on + strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 311.500 kb on - strand, within MPMX19_06524at 311.568 kb on - strand, within MPMX19_06524at 311.568 kb on - strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 312.108 kb on + strand, within MPMX19_06525at 312.109 kb on - strand, within MPMX19_06525at 312.237 kb on - strand, within MPMX19_06525at 312.575 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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309,382 - MPMX19_06523 0.59 +0.8
309,382 - MPMX19_06523 0.59 +0.0
309,382 - MPMX19_06523 0.59 +1.3
309,382 - MPMX19_06523 0.59 -0.9
309,705 + MPMX19_06523 0.73 -2.5
309,705 + MPMX19_06523 0.73 +1.2
309,705 + MPMX19_06523 0.73 -1.5
309,706 - MPMX19_06523 0.73 -0.6
309,706 - MPMX19_06523 0.73 +0.2
309,706 - MPMX19_06523 0.73 -1.7
309,706 - MPMX19_06523 0.73 +0.9
309,706 - MPMX19_06523 0.73 +1.7
309,706 - MPMX19_06523 0.73 -1.1
309,706 - MPMX19_06523 0.73 -1.1
309,822 + MPMX19_06523 0.78 -0.4
310,030 - MPMX19_06523 0.87 -1.5
310,030 - MPMX19_06523 0.87 -0.3
310,030 - MPMX19_06523 0.87 +0.9
310,030 - MPMX19_06523 0.87 +0.8
310,030 - MPMX19_06523 0.87 +0.4
310,030 - MPMX19_06523 0.87 +0.1
310,114 + -1.1
310,114 + -0.1
310,114 + -1.3
310,114 + -1.6
310,114 + -0.8
310,114 + -0.3
310,114 + -0.3
310,115 - -0.9
310,115 - +0.8
310,115 - -0.9
310,115 - -0.1
310,115 - +0.0
310,115 - -0.0
310,115 - -0.6
310,115 - -0.6
310,674 + MPMX19_06524 0.21 -0.4
310,674 + MPMX19_06524 0.21 +0.3
310,674 + MPMX19_06524 0.21 -1.2
310,674 + MPMX19_06524 0.21 -2.4
310,674 + MPMX19_06524 0.21 -1.3
310,674 + MPMX19_06524 0.21 +0.7
310,674 + MPMX19_06524 0.21 -1.9
310,675 - MPMX19_06524 0.21 +0.6
310,675 - MPMX19_06524 0.21 -0.4
310,675 - MPMX19_06524 0.21 +1.3
310,675 - MPMX19_06524 0.21 +0.6
310,675 - MPMX19_06524 0.21 +0.4
310,675 - MPMX19_06524 0.21 +1.4
310,675 - MPMX19_06524 0.21 +0.4
310,675 - MPMX19_06524 0.21 +0.7
311,500 - MPMX19_06524 0.77 +0.7
311,568 - MPMX19_06524 0.81 +0.4
311,568 - MPMX19_06524 0.81 +0.8
311,694 + MPMX19_06524 0.90 -0.5
311,694 + MPMX19_06524 0.90 -1.1
311,694 + MPMX19_06524 0.90 +0.7
311,694 + MPMX19_06524 0.90 +0.2
311,694 + MPMX19_06524 0.90 +0.3
311,695 - MPMX19_06524 0.90 -0.3
311,695 - MPMX19_06524 0.90 +0.1
311,695 - MPMX19_06524 0.90 -0.6
311,695 - MPMX19_06524 0.90 -0.3
311,695 - MPMX19_06524 0.90 +0.4
311,695 - MPMX19_06524 0.90 -0.9
311,695 - MPMX19_06524 0.90 +1.1
312,108 + MPMX19_06525 0.15 -1.5
312,109 - MPMX19_06525 0.16 +0.5
312,237 - MPMX19_06525 0.23 -0.9
312,575 + MPMX19_06525 0.43 -1.1
312,812 + MPMX19_06525 0.57 +0.1
312,812 + MPMX19_06525 0.57 +0.6
312,812 + MPMX19_06525 0.57 -1.1
312,812 + MPMX19_06525 0.57 +0.6
312,812 + MPMX19_06525 0.57 +0.1

Or see this region's nucleotide sequence