Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06448 and MPMX19_06449 are separated by 357 nucleotides MPMX19_06449 and MPMX19_06450 overlap by 1 nucleotides
MPMX19_06448: MPMX19_06448 - hypothetical protein, at 221,318 to 222,112
_06448
MPMX19_06449: MPMX19_06449 - hypothetical protein, at 222,470 to 222,757
_06449
MPMX19_06450: MPMX19_06450 - Fe(2+) transporter FeoB, at 222,757 to 224,862
_06450
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.988 kb on + strand, within MPMX19_06448 at 222.163 kb on + strand at 222.163 kb on + strand at 222.163 kb on + strand at 222.163 kb on + strand at 222.164 kb on - strand at 222.164 kb on - strand at 222.238 kb on + strand at 222.238 kb on + strand at 222.239 kb on - strand at 222.301 kb on + strand at 222.301 kb on + strand at 222.301 kb on + strand at 222.302 kb on - strand at 222.303 kb on + strand at 222.303 kb on + strand at 222.304 kb on - strand at 222.304 kb on - strand at 222.304 kb on - strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.336 kb on - strand at 222.336 kb on - strand at 222.336 kb on - strand at 222.447 kb on + strand at 222.447 kb on + strand at 222.448 kb on - strand at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.642 kb on - strand, within MPMX19_06449 at 222.642 kb on - strand, within MPMX19_06449 at 222.736 kb on + strand at 222.868 kb on + strand at 222.869 kb on - strand at 222.869 kb on - strand at 222.869 kb on - strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 223.146 kb on + strand, within MPMX19_06450 at 223.147 kb on - strand, within MPMX19_06450 at 223.316 kb on + strand, within MPMX19_06450 at 223.317 kb on - strand, within MPMX19_06450 at 223.317 kb on - strand, within MPMX19_06450 at 223.354 kb on + strand, within MPMX19_06450 at 223.354 kb on + strand, within MPMX19_06450 at 223.414 kb on - strand, within MPMX19_06450 at 223.418 kb on + strand, within MPMX19_06450 at 223.418 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.475 kb on + strand, within MPMX19_06450 at 223.476 kb on - strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.708 kb on + strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450 at 223.709 kb on - strand, within MPMX19_06450
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 221,889 + MPMX19_06448 0.72 +0.6 221,889 + MPMX19_06448 0.72 +0.5 221,889 + MPMX19_06448 0.72 -0.3 221,889 + MPMX19_06448 0.72 -0.3 221,889 + MPMX19_06448 0.72 -0.3 221,889 + MPMX19_06448 0.72 -0.1 221,889 + MPMX19_06448 0.72 -0.4 221,889 + MPMX19_06448 0.72 -1.3 221,889 + MPMX19_06448 0.72 -1.2 221,889 + MPMX19_06448 0.72 +0.3 221,889 + MPMX19_06448 0.72 -1.3 221,889 + MPMX19_06448 0.72 +0.9 221,889 + MPMX19_06448 0.72 +0.8 221,889 + MPMX19_06448 0.72 -0.3 221,889 + MPMX19_06448 0.72 -0.4 221,988 + MPMX19_06448 0.84 -0.3 222,163 + +0.2 222,163 + +1.3 222,163 + +0.1 222,163 + -0.3 222,164 - -0.2 222,164 - -0.8 222,238 + -2.0 222,238 + +0.7 222,239 - +0.0 222,301 + -1.0 222,301 + -0.5 222,301 + -0.1 222,302 - -0.6 222,303 + -1.9 222,303 + +0.7 222,304 - -0.1 222,304 - +0.7 222,304 - +0.7 222,335 + -1.1 222,335 + -1.1 222,335 + -0.8 222,335 + +1.3 222,336 - +0.3 222,336 - +0.7 222,336 - -0.2 222,447 + +0.9 222,447 + -1.9 222,448 - +1.3 222,641 + MPMX19_06449 0.59 -1.5 222,641 + MPMX19_06449 0.59 -0.1 222,641 + MPMX19_06449 0.59 -2.0 222,641 + MPMX19_06449 0.59 -2.2 222,641 + MPMX19_06449 0.59 -1.2 222,641 + MPMX19_06449 0.59 -1.1 222,642 - MPMX19_06449 0.60 -0.2 222,642 - MPMX19_06449 0.60 +0.2 222,736 + -0.4 222,868 + -0.3 222,869 - -0.8 222,869 - -0.5 222,869 - -1.6 222,955 + -0.4 222,955 + +1.3 222,955 + -0.4 222,956 - +0.0 222,956 - -0.6 222,956 - -0.4 222,956 - -0.1 222,956 - -0.3 222,956 - -1.1 222,956 - -0.9 223,146 + MPMX19_06450 0.18 -0.8 223,147 - MPMX19_06450 0.19 -1.6 223,316 + MPMX19_06450 0.27 +0.2 223,317 - MPMX19_06450 0.27 -0.3 223,317 - MPMX19_06450 0.27 +0.2 223,354 + MPMX19_06450 0.28 -2.2 223,354 + MPMX19_06450 0.28 -0.3 223,414 - MPMX19_06450 0.31 -0.6 223,418 + MPMX19_06450 0.31 -0.3 223,418 + MPMX19_06450 0.31 -0.9 223,475 + MPMX19_06450 0.34 +1.0 223,475 + MPMX19_06450 0.34 +0.3 223,475 + MPMX19_06450 0.34 -0.5 223,475 + MPMX19_06450 0.34 -0.3 223,476 - MPMX19_06450 0.34 -0.9 223,708 + MPMX19_06450 0.45 +0.5 223,708 + MPMX19_06450 0.45 -0.2 223,708 + MPMX19_06450 0.45 -0.2 223,708 + MPMX19_06450 0.45 -0.3 223,708 + MPMX19_06450 0.45 -0.6 223,708 + MPMX19_06450 0.45 -1.0 223,708 + MPMX19_06450 0.45 -0.9 223,708 + MPMX19_06450 0.45 +0.2 223,709 - MPMX19_06450 0.45 +0.1 223,709 - MPMX19_06450 0.45 -0.6 223,709 - MPMX19_06450 0.45 -0.9 223,709 - MPMX19_06450 0.45 +0.6 223,709 - MPMX19_06450 0.45 -0.2
Or see this region's nucleotide sequence