Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05958

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
				remove
105,232	+			-0.1
105,232	+			-2.1
105,233	-			-0.7
105,233	-			+0.4
105,244	-			-0.1
105,352	+			-0.8
105,353	-			+0.9
105,355	+			-0.0
105,355	+			-1.3
105,355	+			-0.8
105,355	+			-0.3
105,355	+			-0.5
105,355	+			+0.4
105,355	+			+0.1
105,356	-			-0.4
105,356	-			+0.1
105,356	-			-0.3
105,356	-			+0.1
105,356	-			+0.1
105,356	-			-1.5
105,356	-			+0.9
105,424	+	MPMX19_05957	0.16	+0.3
105,424	+	MPMX19_05957	0.16	-0.5
105,424	+	MPMX19_05957	0.16	+0.4
105,424	+	MPMX19_05957	0.16	-0.2
105,425	-	MPMX19_05957	0.16	+0.4
105,425	-	MPMX19_05957	0.16	-0.5
105,425	-	MPMX19_05957	0.16	-1.1
105,425	-	MPMX19_05957	0.16	-1.0
105,425	-	MPMX19_05957	0.16	-0.5
105,425	-	MPMX19_05957	0.16	+0.1
105,425	-	MPMX19_05957	0.16	-0.0
105,460	+	MPMX19_05957	0.22	+0.5
105,460	+	MPMX19_05957	0.22	-0.2
105,461	-	MPMX19_05957	0.22	+0.3
105,461	-	MPMX19_05957	0.22	-0.3
105,461	-	MPMX19_05957	0.22	-1.0
105,691	+	MPMX19_05957	0.59	-0.1
105,691	+	MPMX19_05957	0.59	+0.6
105,691	+	MPMX19_05957	0.59	-0.3
105,691	+	MPMX19_05957	0.59	-0.7
105,691	+	MPMX19_05957	0.59	+0.1
105,691	+	MPMX19_05957	0.59	-0.1
105,691	+	MPMX19_05957	0.59	+0.3
105,691	+	MPMX19_05957	0.59	+0.4
105,691	+	MPMX19_05957	0.59	-0.7
105,691	+	MPMX19_05957	0.59	-0.2
105,691	+	MPMX19_05957	0.59	-0.3
105,691	+	MPMX19_05957	0.59	+0.5
105,691	+	MPMX19_05957	0.59	-0.9
105,691	+	MPMX19_05957	0.59	-0.1
105,691	+	MPMX19_05957	0.59	+0.1
105,691	+	MPMX19_05957	0.59	-1.5
105,691	+	MPMX19_05957	0.59	-0.5
105,691	+	MPMX19_05957	0.59	-0.4
105,692	-	MPMX19_05957	0.60	-0.9
105,692	-	MPMX19_05957	0.60	-0.2
105,692	-	MPMX19_05957	0.60	+0.3
105,692	-	MPMX19_05957	0.60	+0.6
105,692	-	MPMX19_05957	0.60	-0.4
105,692	-	MPMX19_05957	0.60	+1.2
105,692	-	MPMX19_05957	0.60	-0.8
105,692	-	MPMX19_05957	0.60	-0.7
105,692	-	MPMX19_05957	0.60	+0.4
105,692	-	MPMX19_05957	0.60	-1.2
105,692	-	MPMX19_05957	0.60	-0.2
105,692	-	MPMX19_05957	0.60	-1.1
105,692	-	MPMX19_05957	0.60	-0.5
105,692	-	MPMX19_05957	0.60	+0.6
105,692	-	MPMX19_05957	0.60	-0.4
105,692	-	MPMX19_05957	0.60	+2.0
105,693	-	MPMX19_05957	0.60	-0.8
105,781	+	MPMX19_05957	0.74	-0.4
105,781	+	MPMX19_05957	0.74	+0.9
105,781	+	MPMX19_05957	0.74	+0.5
105,781	+	MPMX19_05957	0.74	-0.9
105,782	-	MPMX19_05957	0.74	+0.3
105,782	-	MPMX19_05957	0.74	+1.2
105,782	-	MPMX19_05957	0.74	-1.3
105,782	-	MPMX19_05957	0.74	-0.9
105,782	-	MPMX19_05957	0.74	-0.2
105,782	-	MPMX19_05957	0.74	+0.6
105,782	-	MPMX19_05957	0.74	-1.9
105,961	+			+1.6
105,962	-			-1.7
105,962	-			-1.1
105,962	-			+0.8
105,962	-			-1.4
105,962	-			-1.1
106,001	+			+0.3
106,001	+			-1.4
106,001	+			-1.8
106,001	+			+0.1
106,002	-			-0.5
106,002	-			+0.3
106,002	-			-4.0
106,002	-			-0.1
106,002	-			+0.2
106,002	-			-1.8
106,002	-			+1.3
106,002	-			-1.0
106,002	-			-0.4
106,003	+			-0.4
106,003	+			+0.4
106,003	+			-2.4
106,003	+			-0.9
106,003	+			+0.8
106,003	+			-0.4
106,003	+			-1.1
106,003	+			-0.7
106,003	+			+0.4
106,003	+			-0.1
106,003	+			+0.8
106,003	+			-1.7
106,004	-			-1.4
106,004	-			-1.0
106,004	-			+0.3
106,004	-			+0.1
106,004	-			-0.2
106,004	-			-1.5
106,004	-			-0.3
106,004	-			-0.2
106,035	+			+0.9
106,035	+			+0.8
106,035	+			-1.3
106,035	+			-2.3
106,035	+			-1.9
106,036	-			-0.1
106,036	-			-0.5
106,044	+			-0.4
106,044	+			-0.2
106,045	-			-0.6
106,045	-			+0.9
106,050	+			-0.1
106,050	+			-0.2
106,050	+			-1.9
106,051	-			-0.4
106,051	-			+0.1
106,051	-			-1.6
106,117	+			+0.2
106,117	+			-0.2
106,117	+			-0.4
106,117	+			-1.4
106,117	+			-1.1
106,117	+			+0.1
106,117	+			+0.8
106,117	+			-0.6
106,117	+			+0.1
106,117	+			-0.2
106,117	+			-0.5
106,118	-			+0.8
106,118	-			-0.7
106,118	-			-0.5
106,118	-			+0.3
106,118	-			-0.5
106,118	-			+0.4
106,118	-			-0.4
106,118	-			-0.1
106,118	-			+0.1
106,122	+			+0.1
106,122	+			+0.3
106,122	+			+0.5
106,122	+			+0.6
106,122	+			-0.4
106,122	+			-1.5
106,122	+			-1.5
106,122	+			-0.5
106,122	+			-0.9
106,122	+			-0.2
106,122	+			-0.9
106,122	+			+0.1
106,122	+			-0.7
106,122	+			-1.9
106,122	+			-0.4
106,123	-			-1.2
106,123	-			+0.1
106,123	-			-0.4
106,123	-			-1.8
106,123	-			+0.5
106,123	-			+0.2
106,123	-			-0.5
106,123	-			-1.0
106,123	-			+0.2
106,123	-			+0.6
106,123	-			-0.4
106,123	-			+0.8
106,316	-	MPMX19_05958	0.13	+0.4
106,321	+	MPMX19_05958	0.13	+0.1
106,321	+	MPMX19_05958	0.13	-0.0
106,321	+	MPMX19_05958	0.13	+0.3
106,321	+	MPMX19_05958	0.13	+1.1
106,322	-	MPMX19_05958	0.13	-0.2
106,322	-	MPMX19_05958	0.13	-0.5
106,322	-	MPMX19_05958	0.13	-0.7
106,322	-	MPMX19_05958	0.13	-0.5
106,405	+	MPMX19_05958	0.19	+0.1
106,406	-	MPMX19_05958	0.19	-2.2
106,912	+	MPMX19_05958	0.51	+0.1
106,912	+	MPMX19_05958	0.51	-0.3
106,912	+	MPMX19_05958	0.51	+0.2
106,912	+	MPMX19_05958	0.51	-1.0
106,912	+	MPMX19_05958	0.51	-0.1
106,912	+	MPMX19_05958	0.51	-0.5
106,912	+	MPMX19_05958	0.51	-2.4
106,912	+	MPMX19_05958	0.51	+1.6
106,912	+	MPMX19_05958	0.51	-0.7
106,912	+	MPMX19_05958	0.51	-0.9
106,912	+	MPMX19_05958	0.51	+0.4
106,912	+	MPMX19_05958	0.51	-1.2
106,912	+	MPMX19_05958	0.51	+0.9
106,912	+	MPMX19_05958	0.51	-0.6
106,913	-	MPMX19_05958	0.51	+1.4
106,913	-	MPMX19_05958	0.51	-0.4
106,913	-	MPMX19_05958	0.51	-1.4
106,913	-	MPMX19_05958	0.51	-1.3
106,913	-	MPMX19_05958	0.51	+0.4
106,913	-	MPMX19_05958	0.51	-0.4
106,913	-	MPMX19_05958	0.51	-0.7
106,913	-	MPMX19_05958	0.51	+0.4
106,913	-	MPMX19_05958	0.51	-0.2
106,913	-	MPMX19_05958	0.51	-0.9
106,987	+	MPMX19_05958	0.55	+1.3
106,987	+	MPMX19_05958	0.55	+0.1
106,987	+	MPMX19_05958	0.55	+0.8
106,988	-	MPMX19_05958	0.55	+0.3
106,988	-	MPMX19_05958	0.55	-0.3
106,988	-	MPMX19_05958	0.55	-1.2
107,008	+	MPMX19_05958	0.57	-0.5
107,008	+	MPMX19_05958	0.57	-1.9
107,008	+	MPMX19_05958	0.57	-2.1
107,134	+	MPMX19_05958	0.65	-1.9
107,134	+	MPMX19_05958	0.65	+0.3
107,134	+	MPMX19_05958	0.65	+0.4
107,135	-	MPMX19_05958	0.65	+0.5
107,135	-	MPMX19_05958	0.65	-0.9
107,368	+	MPMX19_05958	0.79	+0.1
107,368	+	MPMX19_05958	0.79	-0.1
107,368	+	MPMX19_05958	0.79	-0.2
107,368	+	MPMX19_05958	0.79	+0.4
107,368	+	MPMX19_05958	0.79	-0.4
107,368	+	MPMX19_05958	0.79	+0.1
107,368	+	MPMX19_05958	0.79	+1.1
107,368	+	MPMX19_05958	0.79	+1.3
107,368	+	MPMX19_05958	0.79	+0.4
107,368	+	MPMX19_05958	0.79	+0.1
107,368	+	MPMX19_05958	0.79	-1.4
107,368	+	MPMX19_05958	0.79	-0.8
107,368	+	MPMX19_05958	0.79	+0.2
107,368	+	MPMX19_05958	0.79	+0.6
107,369	-	MPMX19_05958	0.79	-1.2
107,369	-	MPMX19_05958	0.79	-1.1
107,381	-	MPMX19_05958	0.80	-0.0
107,608	+			-0.1
107,608	+			-0.2
107,609	-			-0.0
107,609	-			-2.2
107,695	+			+0.2
107,696	-			-0.9
107,696	-			-0.1
107,719	-			-0.1
107,727	+			+0.0
107,727	+			-0.7
107,727	+			-1.9
107,727	+			+0.2
107,728	-			+0.3
107,728	-			-0.9
107,728	-			+0.1
107,728	-			-0.4
107,728	-			-0.7
107,728	-			-0.4
107,728	-			-0.5
107,728	-			-1.8
107,733	+			-0.1
107,882	+			-1.3
107,882	+			-0.3
107,882	+			-0.8
107,882	+			-1.9
107,882	+			-2.3
107,882	+			-1.8
107,882	+			-1.6
107,882	+			-0.0
107,882	+			-0.4
107,882	+			-1.0
107,883	-			-1.0
107,883	-			-1.4
107,883	-			-0.7
107,883	-			-0.9
107,883	-			-0.5
107,883	-			+0.1
107,883	-			-1.0
107,883	-			+0.4
107,883	-			+0.3
107,883	-			-0.5
108,296	+	MPMX19_05959	0.48	-0.8
108,296	+	MPMX19_05959	0.48	-0.8
108,296	+	MPMX19_05959	0.48	-0.9
108,296	+	MPMX19_05959	0.48	-1.1
108,296	+	MPMX19_05959	0.48	-1.8
108,296	+	MPMX19_05959	0.48	-0.8
108,296	+	MPMX19_05959	0.48	-0.0
108,297	-	MPMX19_05959	0.49	+2.6
108,297	-	MPMX19_05959	0.49	-1.8
108,297	-	MPMX19_05959	0.49	-1.1
108,297	-	MPMX19_05959	0.49	-1.2
108,297	-	MPMX19_05959	0.49	-0.3
108,297	-	MPMX19_05959	0.49	-0.3
108,297	-	MPMX19_05959	0.49	-2.1
108,297	-	MPMX19_05959	0.49	-0.7
108,527	+	MPMX19_05959	0.75	-0.9
108,527	+	MPMX19_05959	0.75	-0.1
108,527	+	MPMX19_05959	0.75	+0.6
108,528	-	MPMX19_05959	0.75	+1.6
108,528	-	MPMX19_05959	0.75	-0.8
108,528	-	MPMX19_05959	0.75	-1.3
108,528	-	MPMX19_05959	0.75	+2.2
108,528	-	MPMX19_05959	0.75	-1.8
108,558	+	MPMX19_05959	0.79	-0.6
108,558	+	MPMX19_05959	0.79	+0.6
108,558	+	MPMX19_05959	0.79	-0.8
108,558	+	MPMX19_05959	0.79	-0.6
108,559	-	MPMX19_05959	0.79	+0.4
108,559	-	MPMX19_05959	0.79	-0.7
108,559	-	MPMX19_05959	0.79	+0.4
108,559	-	MPMX19_05959	0.79	+0.6
108,559	-	MPMX19_05959	0.79	-0.1
108,559	-	MPMX19_05959	0.79	+0.9
108,559	-	MPMX19_05959	0.79	-0.2
108,559	-	MPMX19_05959	0.79	-1.2
108,559	-	MPMX19_05959	0.79	-0.9
108,559	-	MPMX19_05959	0.79	-0.5
108,564	+	MPMX19_05959	0.79	-1.3
108,564	+	MPMX19_05959	0.79	-1.2
108,564	+	MPMX19_05959	0.79	-1.4
108,564	+	MPMX19_05959	0.79	-1.9
108,564	+	MPMX19_05959	0.79	+0.4
108,564	+	MPMX19_05959	0.79	-0.9
108,564	+	MPMX19_05959	0.79	-0.1
108,565	-	MPMX19_05959	0.79	-0.3
108,565	-	MPMX19_05959	0.79	-0.7
108,565	-	MPMX19_05959	0.79	-0.2
108,651	-	MPMX19_05959	0.89	-0.4
108,651	-	MPMX19_05959	0.89	-1.4

Or see this region's nucleotide sequence