Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05653 and MPMX19_05654 are separated by 74 nucleotides MPMX19_05654 and MPMX19_05655 are separated by 107 nucleotides MPMX19_05655 and MPMX19_05656 overlap by 8 nucleotides
MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390
_05653
MPMX19_05654: MPMX19_05654 - hypothetical protein, at 371,465 to 372,154
_05654
MPMX19_05655: MPMX19_05655 - hypothetical protein, at 372,262 to 372,948
_05655
MPMX19_05656: MPMX19_05656 - HTH-type transcriptional activator RhaR, at 372,941 to 373,690
_05656
Position (kb) 372
373 Strain fitness (log2 ratio) -2
-1
0
1
2 at 371.432 kb on + strand at 371.557 kb on + strand, within MPMX19_05654 at 371.557 kb on + strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.558 kb on - strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.576 kb on + strand, within MPMX19_05654 at 371.577 kb on - strand, within MPMX19_05654 at 371.577 kb on - strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.963 kb on + strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 371.964 kb on - strand, within MPMX19_05654 at 372.014 kb on + strand, within MPMX19_05654 at 372.014 kb on + strand, within MPMX19_05654 at 372.014 kb on + strand, within MPMX19_05654 at 372.015 kb on - strand, within MPMX19_05654 at 372.015 kb on - strand, within MPMX19_05654 at 372.015 kb on - strand, within MPMX19_05654 at 372.042 kb on + strand, within MPMX19_05654 at 372.042 kb on + strand, within MPMX19_05654 at 372.042 kb on + strand, within MPMX19_05654 at 372.043 kb on - strand, within MPMX19_05654 at 372.043 kb on - strand, within MPMX19_05654 at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.098 kb on + strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.099 kb on - strand at 372.104 kb on + strand at 372.104 kb on + strand at 372.104 kb on + strand at 372.104 kb on + strand at 372.105 kb on - strand at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.523 kb on + strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.524 kb on - strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.784 kb on + strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.785 kb on - strand, within MPMX19_05655 at 372.942 kb on + strand at 372.942 kb on + strand at 372.942 kb on + strand at 372.943 kb on - strand at 372.943 kb on - strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.946 kb on + strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 372.947 kb on - strand at 373.268 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.374 kb on + strand, within MPMX19_05656 at 373.375 kb on - strand, within MPMX19_05656 at 373.650 kb on + strand at 373.650 kb on + strand at 373.650 kb on + strand at 373.650 kb on + strand at 373.650 kb on + strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.651 kb on - strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.729 kb on + strand at 373.730 kb on - strand at 373.785 kb on + strand at 373.848 kb on - strand at 373.868 kb on + strand at 373.903 kb on - strand at 373.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 371,432 + -0.6 371,557 + MPMX19_05654 0.13 +0.0 371,557 + MPMX19_05654 0.13 +1.5 371,558 - MPMX19_05654 0.13 -1.8 371,558 - MPMX19_05654 0.13 -1.1 371,558 - MPMX19_05654 0.13 -0.3 371,558 - MPMX19_05654 0.13 -0.1 371,558 - MPMX19_05654 0.13 +0.1 371,576 + MPMX19_05654 0.16 -1.6 371,576 + MPMX19_05654 0.16 +0.3 371,576 + MPMX19_05654 0.16 -1.2 371,577 - MPMX19_05654 0.16 -0.4 371,577 - MPMX19_05654 0.16 +1.1 371,963 + MPMX19_05654 0.72 -0.9 371,963 + MPMX19_05654 0.72 -0.3 371,963 + MPMX19_05654 0.72 -0.4 371,963 + MPMX19_05654 0.72 -0.9 371,963 + MPMX19_05654 0.72 +0.0 371,963 + MPMX19_05654 0.72 +0.0 371,963 + MPMX19_05654 0.72 -0.1 371,963 + MPMX19_05654 0.72 +0.4 371,963 + MPMX19_05654 0.72 +1.0 371,963 + MPMX19_05654 0.72 +0.0 371,963 + MPMX19_05654 0.72 +0.4 371,964 - MPMX19_05654 0.72 +0.7 371,964 - MPMX19_05654 0.72 +0.0 371,964 - MPMX19_05654 0.72 +0.6 371,964 - MPMX19_05654 0.72 +0.6 371,964 - MPMX19_05654 0.72 -0.3 371,964 - MPMX19_05654 0.72 -0.7 371,964 - MPMX19_05654 0.72 -0.4 371,964 - MPMX19_05654 0.72 +0.7 371,964 - MPMX19_05654 0.72 -0.1 371,964 - MPMX19_05654 0.72 +0.4 371,964 - MPMX19_05654 0.72 +0.6 372,014 + MPMX19_05654 0.80 -0.7 372,014 + MPMX19_05654 0.80 -0.6 372,014 + MPMX19_05654 0.80 +0.7 372,015 - MPMX19_05654 0.80 -0.7 372,015 - MPMX19_05654 0.80 -0.0 372,015 - MPMX19_05654 0.80 -0.1 372,042 + MPMX19_05654 0.84 +0.6 372,042 + MPMX19_05654 0.84 -1.2 372,042 + MPMX19_05654 0.84 -0.1 372,043 - MPMX19_05654 0.84 +0.2 372,043 - MPMX19_05654 0.84 +0.2 372,098 + -0.5 372,098 + +0.4 372,098 + +0.6 372,098 + -2.2 372,098 + -0.1 372,098 + -1.6 372,098 + -1.6 372,098 + -1.8 372,098 + +0.4 372,098 + +0.3 372,099 - +0.0 372,099 - -1.3 372,099 - +0.9 372,099 - -0.1 372,099 - -0.3 372,099 - -0.7 372,099 - +0.8 372,099 - +0.4 372,099 - -0.6 372,099 - +0.3 372,099 - -0.4 372,099 - +0.9 372,104 + -0.2 372,104 + +0.7 372,104 + -0.1 372,104 + +0.0 372,105 - -1.7 372,523 + MPMX19_05655 0.38 -1.4 372,523 + MPMX19_05655 0.38 +0.3 372,523 + MPMX19_05655 0.38 -1.3 372,523 + MPMX19_05655 0.38 -0.5 372,523 + MPMX19_05655 0.38 +0.6 372,523 + MPMX19_05655 0.38 -0.4 372,523 + MPMX19_05655 0.38 -0.1 372,523 + MPMX19_05655 0.38 -0.6 372,523 + MPMX19_05655 0.38 +0.9 372,523 + MPMX19_05655 0.38 +0.4 372,523 + MPMX19_05655 0.38 -0.8 372,523 + MPMX19_05655 0.38 -1.2 372,523 + MPMX19_05655 0.38 +1.0 372,523 + MPMX19_05655 0.38 +0.2 372,523 + MPMX19_05655 0.38 -0.6 372,523 + MPMX19_05655 0.38 -0.4 372,523 + MPMX19_05655 0.38 +0.5 372,523 + MPMX19_05655 0.38 +0.6 372,523 + MPMX19_05655 0.38 -0.8 372,524 - MPMX19_05655 0.38 +0.6 372,524 - MPMX19_05655 0.38 -1.3 372,524 - MPMX19_05655 0.38 +1.0 372,524 - MPMX19_05655 0.38 -0.2 372,524 - MPMX19_05655 0.38 -0.7 372,524 - MPMX19_05655 0.38 +0.2 372,524 - MPMX19_05655 0.38 -0.6 372,524 - MPMX19_05655 0.38 +0.6 372,524 - MPMX19_05655 0.38 +0.2 372,524 - MPMX19_05655 0.38 +0.0 372,524 - MPMX19_05655 0.38 +0.3 372,524 - MPMX19_05655 0.38 +1.3 372,524 - MPMX19_05655 0.38 +0.0 372,524 - MPMX19_05655 0.38 +0.3 372,784 + MPMX19_05655 0.76 -0.6 372,784 + MPMX19_05655 0.76 +1.1 372,784 + MPMX19_05655 0.76 +0.0 372,784 + MPMX19_05655 0.76 +1.1 372,784 + MPMX19_05655 0.76 -1.6 372,784 + MPMX19_05655 0.76 +0.1 372,784 + MPMX19_05655 0.76 -0.2 372,784 + MPMX19_05655 0.76 +0.1 372,784 + MPMX19_05655 0.76 +0.6 372,784 + MPMX19_05655 0.76 +0.0 372,784 + MPMX19_05655 0.76 +1.0 372,784 + MPMX19_05655 0.76 +2.6 372,784 + MPMX19_05655 0.76 +0.4 372,784 + MPMX19_05655 0.76 +1.3 372,784 + MPMX19_05655 0.76 +0.0 372,784 + MPMX19_05655 0.76 -0.4 372,784 + MPMX19_05655 0.76 +0.8 372,784 + MPMX19_05655 0.76 +0.0 372,784 + MPMX19_05655 0.76 +0.3 372,784 + MPMX19_05655 0.76 -1.6 372,785 - MPMX19_05655 0.76 +1.0 372,785 - MPMX19_05655 0.76 +0.7 372,785 - MPMX19_05655 0.76 -0.9 372,785 - MPMX19_05655 0.76 -1.4 372,785 - MPMX19_05655 0.76 +0.9 372,785 - MPMX19_05655 0.76 -2.1 372,785 - MPMX19_05655 0.76 -0.6 372,785 - MPMX19_05655 0.76 +1.1 372,785 - MPMX19_05655 0.76 +1.1 372,785 - MPMX19_05655 0.76 -0.5 372,785 - MPMX19_05655 0.76 +0.5 372,785 - MPMX19_05655 0.76 -0.5 372,785 - MPMX19_05655 0.76 +0.2 372,785 - MPMX19_05655 0.76 -0.6 372,785 - MPMX19_05655 0.76 +0.6 372,785 - MPMX19_05655 0.76 -0.2 372,942 + +1.2 372,942 + +0.3 372,942 + +0.5 372,943 - -1.8 372,943 - -1.0 372,946 + -0.7 372,946 + -1.8 372,946 + -0.1 372,946 + +0.3 372,946 + -0.1 372,946 + +0.6 372,946 + -0.6 372,946 + -0.9 372,946 + +0.2 372,946 + -0.4 372,946 + +0.5 372,946 + -0.6 372,946 + +1.1 372,947 - +0.1 372,947 - +0.4 372,947 - -0.6 372,947 - +0.4 372,947 - -1.6 372,947 - +1.0 372,947 - +1.2 372,947 - -0.3 372,947 - +0.9 372,947 - -0.6 372,947 - +0.7 373,268 + MPMX19_05656 0.44 -0.2 373,374 + MPMX19_05656 0.58 +1.4 373,374 + MPMX19_05656 0.58 +2.6 373,374 + MPMX19_05656 0.58 +1.0 373,374 + MPMX19_05656 0.58 -1.6 373,374 + MPMX19_05656 0.58 +0.0 373,375 - MPMX19_05656 0.58 +0.6 373,650 + -0.1 373,650 + -0.6 373,650 + -1.1 373,650 + -0.4 373,650 + -2.2 373,651 - -0.5 373,651 - +0.5 373,651 - -1.7 373,651 - -0.8 373,651 - -0.1 373,729 + +2.0 373,729 + +0.6 373,729 + +0.9 373,729 + +0.6 373,729 + -0.4 373,729 + -1.2 373,729 + -0.5 373,730 - +0.5 373,785 + +0.0 373,848 - -0.9 373,868 + +0.6 373,903 - +1.2 373,942 + -1.5
Or see this region's nucleotide sequence