Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05649 and MPMX19_05650 are separated by 89 nucleotides MPMX19_05650 and MPMX19_05651 are separated by 109 nucleotides MPMX19_05651 and MPMX19_05652 are separated by 244 nucleotides MPMX19_05652 and MPMX19_05653 are separated by 88 nucleotides
MPMX19_05649: MPMX19_05649 - hypothetical protein, at 367,375 to 368,457
_05649
MPMX19_05650: MPMX19_05650 - Ribonuclease HII, at 368,547 to 369,212
_05650
MPMX19_05651: MPMX19_05651 - hypothetical protein, at 369,322 to 369,963
_05651
MPMX19_05652: MPMX19_05652 - hypothetical protein, at 370,208 to 370,822
_05652
MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390
_05653
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 368.674 kb on + strand, within MPMX19_05650 at 368.674 kb on + strand, within MPMX19_05650 at 368.674 kb on + strand, within MPMX19_05650 at 368.674 kb on + strand, within MPMX19_05650 at 368.675 kb on - strand, within MPMX19_05650 at 368.683 kb on + strand, within MPMX19_05650 at 368.684 kb on - strand, within MPMX19_05650 at 368.684 kb on - strand, within MPMX19_05650 at 368.736 kb on - strand, within MPMX19_05650 at 368.736 kb on - strand, within MPMX19_05650 at 368.736 kb on - strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 369.245 kb on + strand at 369.245 kb on + strand at 369.245 kb on + strand at 369.246 kb on - strand at 369.246 kb on - strand at 369.270 kb on + strand at 369.335 kb on + strand at 369.335 kb on + strand at 369.336 kb on - strand at 369.336 kb on - strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.387 kb on - strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.593 kb on - strand, within MPMX19_05651 at 369.593 kb on - strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.663 kb on + strand, within MPMX19_05651 at 369.664 kb on - strand, within MPMX19_05651 at 369.664 kb on - strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.107 kb on + strand at 370.107 kb on + strand at 370.107 kb on + strand at 370.108 kb on - strand at 370.108 kb on - strand at 370.108 kb on - strand at 370.182 kb on + strand at 370.182 kb on + strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.203 kb on - strand at 370.538 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.557 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 368,674 + MPMX19_05650 0.19 +0.2 368,674 + MPMX19_05650 0.19 -0.5 368,674 + MPMX19_05650 0.19 -1.4 368,674 + MPMX19_05650 0.19 +0.3 368,675 - MPMX19_05650 0.19 +0.7 368,683 + MPMX19_05650 0.20 -1.2 368,684 - MPMX19_05650 0.21 -0.2 368,684 - MPMX19_05650 0.21 +0.4 368,736 - MPMX19_05650 0.28 +0.6 368,736 - MPMX19_05650 0.28 -0.2 368,736 - MPMX19_05650 0.28 -1.0 368,863 + MPMX19_05650 0.47 +0.1 368,863 + MPMX19_05650 0.47 -0.7 368,863 + MPMX19_05650 0.47 -0.3 368,863 + MPMX19_05650 0.47 +0.4 368,863 + MPMX19_05650 0.47 -1.9 368,863 + MPMX19_05650 0.47 -0.5 368,863 + MPMX19_05650 0.47 -0.6 368,864 - MPMX19_05650 0.48 -1.5 368,864 - MPMX19_05650 0.48 +0.1 368,864 - MPMX19_05650 0.48 +0.2 368,864 - MPMX19_05650 0.48 -1.0 369,245 + -0.7 369,245 + -1.5 369,245 + +0.2 369,246 - -1.7 369,246 - -0.9 369,270 + -1.5 369,335 + +0.7 369,335 + -1.1 369,336 - -0.2 369,336 - +0.2 369,386 + -0.7 369,386 + +0.6 369,386 + +1.4 369,386 + -0.3 369,386 + -1.0 369,387 - MPMX19_05651 0.10 -1.0 369,541 + MPMX19_05651 0.34 -0.3 369,541 + MPMX19_05651 0.34 -0.8 369,541 + MPMX19_05651 0.34 +0.6 369,541 + MPMX19_05651 0.34 -0.3 369,541 + MPMX19_05651 0.34 +0.6 369,541 + MPMX19_05651 0.34 +1.6 369,542 - MPMX19_05651 0.34 -0.0 369,542 - MPMX19_05651 0.34 -1.5 369,542 - MPMX19_05651 0.34 +0.5 369,542 - MPMX19_05651 0.34 +2.0 369,542 - MPMX19_05651 0.34 -2.1 369,542 - MPMX19_05651 0.34 -1.5 369,542 - MPMX19_05651 0.34 +0.1 369,542 - MPMX19_05651 0.34 -0.4 369,542 - MPMX19_05651 0.34 +0.4 369,542 - MPMX19_05651 0.34 -0.3 369,542 - MPMX19_05651 0.34 +0.9 369,592 + MPMX19_05651 0.42 -0.5 369,592 + MPMX19_05651 0.42 +0.6 369,592 + MPMX19_05651 0.42 -0.7 369,593 - MPMX19_05651 0.42 +0.3 369,593 - MPMX19_05651 0.42 +0.4 369,622 + MPMX19_05651 0.47 +0.2 369,622 + MPMX19_05651 0.47 +0.4 369,622 + MPMX19_05651 0.47 -0.4 369,622 + MPMX19_05651 0.47 +0.4 369,622 + MPMX19_05651 0.47 +0.5 369,622 + MPMX19_05651 0.47 +0.1 369,623 - MPMX19_05651 0.47 +0.0 369,623 - MPMX19_05651 0.47 -0.9 369,623 - MPMX19_05651 0.47 -1.3 369,623 - MPMX19_05651 0.47 -0.5 369,623 - MPMX19_05651 0.47 +1.8 369,623 - MPMX19_05651 0.47 +0.2 369,623 - MPMX19_05651 0.47 -0.0 369,623 - MPMX19_05651 0.47 -0.8 369,623 - MPMX19_05651 0.47 +1.6 369,623 - MPMX19_05651 0.47 +0.2 369,623 - MPMX19_05651 0.47 -0.3 369,623 - MPMX19_05651 0.47 +0.6 369,623 - MPMX19_05651 0.47 +0.6 369,663 + MPMX19_05651 0.53 -0.9 369,664 - MPMX19_05651 0.53 +1.0 369,664 - MPMX19_05651 0.53 -1.5 369,850 + MPMX19_05651 0.82 +0.2 369,850 + MPMX19_05651 0.82 +0.5 369,850 + MPMX19_05651 0.82 +0.3 369,850 + MPMX19_05651 0.82 -0.5 369,850 + MPMX19_05651 0.82 -0.8 369,850 + MPMX19_05651 0.82 +0.5 369,850 + MPMX19_05651 0.82 +0.5 369,850 + MPMX19_05651 0.82 -0.7 369,850 + MPMX19_05651 0.82 -0.5 369,850 + MPMX19_05651 0.82 +0.6 369,850 + MPMX19_05651 0.82 -0.2 369,850 + MPMX19_05651 0.82 -0.0 369,850 + MPMX19_05651 0.82 -0.2 369,851 - MPMX19_05651 0.82 +0.1 369,851 - MPMX19_05651 0.82 +0.5 369,851 - MPMX19_05651 0.82 -0.1 369,851 - MPMX19_05651 0.82 -0.3 369,851 - MPMX19_05651 0.82 -1.0 369,851 - MPMX19_05651 0.82 -0.8 369,851 - MPMX19_05651 0.82 -1.3 369,851 - MPMX19_05651 0.82 -1.4 369,851 - MPMX19_05651 0.82 +0.9 369,853 + MPMX19_05651 0.83 -0.1 369,853 + MPMX19_05651 0.83 -1.2 369,853 + MPMX19_05651 0.83 +1.2 369,853 + MPMX19_05651 0.83 -0.0 369,853 + MPMX19_05651 0.83 -0.9 369,853 + MPMX19_05651 0.83 +1.2 369,853 + MPMX19_05651 0.83 +0.6 369,853 + MPMX19_05651 0.83 +0.6 369,853 + MPMX19_05651 0.83 -0.4 369,853 + MPMX19_05651 0.83 +0.7 369,853 + MPMX19_05651 0.83 -0.6 369,853 + MPMX19_05651 0.83 +0.8 369,853 + MPMX19_05651 0.83 -0.5 369,853 + MPMX19_05651 0.83 -0.9 369,853 + MPMX19_05651 0.83 +0.3 369,853 + MPMX19_05651 0.83 -1.3 369,853 + MPMX19_05651 0.83 -0.7 369,853 + MPMX19_05651 0.83 -1.2 369,853 + MPMX19_05651 0.83 +0.1 369,853 + MPMX19_05651 0.83 -1.3 369,853 + MPMX19_05651 0.83 +0.8 369,853 + MPMX19_05651 0.83 +1.3 369,853 + MPMX19_05651 0.83 -0.2 369,853 + MPMX19_05651 0.83 -1.5 369,853 + MPMX19_05651 0.83 +1.9 369,853 + MPMX19_05651 0.83 -0.5 369,853 + MPMX19_05651 0.83 +0.3 369,853 + MPMX19_05651 0.83 -0.0 369,854 - MPMX19_05651 0.83 -0.3 369,854 - MPMX19_05651 0.83 +1.0 369,854 - MPMX19_05651 0.83 -0.7 369,854 - MPMX19_05651 0.83 -0.7 369,854 - MPMX19_05651 0.83 -0.1 369,854 - MPMX19_05651 0.83 +0.1 369,854 - MPMX19_05651 0.83 -0.1 369,854 - MPMX19_05651 0.83 -2.3 369,854 - MPMX19_05651 0.83 +0.5 369,854 - MPMX19_05651 0.83 -0.8 369,854 - MPMX19_05651 0.83 -0.6 369,854 - MPMX19_05651 0.83 +0.4 369,854 - MPMX19_05651 0.83 +0.5 369,854 - MPMX19_05651 0.83 +1.2 369,854 - MPMX19_05651 0.83 +0.0 369,854 - MPMX19_05651 0.83 +0.3 369,940 + -2.0 369,940 + -0.1 369,940 + -1.7 369,940 + -1.4 369,940 + -0.5 369,940 + +0.5 369,940 + +0.5 369,941 - -0.7 369,941 - +1.3 369,941 - +0.3 369,941 - +0.9 369,941 - -2.1 369,941 - -0.2 370,048 - -0.4 370,048 - -0.3 370,048 - -1.3 370,048 - -1.0 370,107 + +1.2 370,107 + -1.8 370,107 + -0.4 370,108 - -0.7 370,108 - -1.0 370,108 - -0.6 370,182 + +0.0 370,182 + +0.1 370,183 - +0.2 370,183 - -0.6 370,183 - +0.7 370,183 - -0.5 370,202 + +0.0 370,202 + -2.7 370,202 + +1.0 370,202 + +0.0 370,203 - +0.2 370,538 + MPMX19_05652 0.54 -0.1 370,556 + MPMX19_05652 0.57 -0.7 370,556 + MPMX19_05652 0.57 -0.7 370,556 + MPMX19_05652 0.57 -1.6 370,556 + MPMX19_05652 0.57 -1.4 370,557 - MPMX19_05652 0.57 +0.3 370,596 - MPMX19_05652 0.63 -0.4 370,596 - MPMX19_05652 0.63 +0.6 370,596 - MPMX19_05652 0.63 -0.8 370,596 - MPMX19_05652 0.63 -2.0
Or see this region's nucleotide sequence