Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05547 and MPMX19_05548 overlap by 23 nucleotides MPMX19_05548 and MPMX19_05549 are separated by 42 nucleotides MPMX19_05549 and MPMX19_05550 overlap by 4 nucleotides
MPMX19_05547: MPMX19_05547 - Methionine import ATP-binding protein MetN, at 252,889 to 253,941
_05547
MPMX19_05548: MPMX19_05548 - D-methionine transport system permease protein MetI, at 253,919 to 254,587
_05548
MPMX19_05549: MPMX19_05549 - D-methionine-binding lipoprotein MetQ, at 254,630 to 255,421
_05549
MPMX19_05550: MPMX19_05550 - Photosystem I assembly protein Ycf3, at 255,418 to 259,158
_05550
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.462 kb on + strand, within MPMX19_05548 at 254.463 kb on - strand, within MPMX19_05548 at 254.463 kb on - strand, within MPMX19_05548 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.882 kb on + strand, within MPMX19_05549 at 254.882 kb on + strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.945 kb on + strand, within MPMX19_05549 at 254.946 kb on - strand, within MPMX19_05549 at 254.946 kb on - strand, within MPMX19_05549 at 254.946 kb on - strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 255.284 kb on + strand, within MPMX19_05549 at 255.284 kb on + strand, within MPMX19_05549 at 255.284 kb on + strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.419 kb on + strand at 255.419 kb on + strand at 255.419 kb on + strand at 255.420 kb on - strand at 255.420 kb on - strand at 255.420 kb on - strand at 255.420 kb on - strand at 255.521 kb on + strand at 255.521 kb on + strand at 255.522 kb on - strand at 255.761 kb on + strand at 255.761 kb on + strand at 255.761 kb on + strand at 255.761 kb on + strand at 255.761 kb on + strand at 255.761 kb on + strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.762 kb on - strand at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.827 kb on + strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.828 kb on - strand, within MPMX19_05550 at 255.877 kb on + strand, within MPMX19_05550 at 255.877 kb on + strand, within MPMX19_05550 at 255.877 kb on + strand, within MPMX19_05550 at 255.878 kb on - strand, within MPMX19_05550 at 255.878 kb on - strand, within MPMX19_05550 at 255.878 kb on - strand, within MPMX19_05550 at 255.878 kb on - strand, within MPMX19_05550 at 255.878 kb on - strand, within MPMX19_05550 at 256.352 kb on + strand, within MPMX19_05550 at 256.352 kb on + strand, within MPMX19_05550 at 256.352 kb on + strand, within MPMX19_05550 at 256.353 kb on - strand, within MPMX19_05550 at 256.409 kb on + strand, within MPMX19_05550
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 254,133 + MPMX19_05548 0.32 +0.7 254,133 + MPMX19_05548 0.32 +0.7 254,133 + MPMX19_05548 0.32 -1.5 254,133 + MPMX19_05548 0.32 +0.7 254,133 + MPMX19_05548 0.32 -1.3 254,133 + MPMX19_05548 0.32 +0.3 254,133 + MPMX19_05548 0.32 +0.5 254,133 + MPMX19_05548 0.32 +0.9 254,133 + MPMX19_05548 0.32 -0.3 254,134 - MPMX19_05548 0.32 +0.3 254,134 - MPMX19_05548 0.32 -0.7 254,134 - MPMX19_05548 0.32 -1.5 254,134 - MPMX19_05548 0.32 +0.5 254,134 - MPMX19_05548 0.32 -1.2 254,134 - MPMX19_05548 0.32 +0.7 254,462 + MPMX19_05548 0.81 -1.5 254,463 - MPMX19_05548 0.81 -0.7 254,463 - MPMX19_05548 0.81 -0.8 254,816 + MPMX19_05549 0.23 -0.1 254,816 + MPMX19_05549 0.23 -0.4 254,816 + MPMX19_05549 0.23 -0.0 254,816 + MPMX19_05549 0.23 -0.1 254,816 + MPMX19_05549 0.23 -0.3 254,816 + MPMX19_05549 0.23 +0.7 254,816 + MPMX19_05549 0.23 +1.2 254,816 + MPMX19_05549 0.23 +0.8 254,816 + MPMX19_05549 0.23 +0.4 254,816 + MPMX19_05549 0.23 +0.2 254,816 + MPMX19_05549 0.23 +1.8 254,816 + MPMX19_05549 0.23 +0.7 254,816 + MPMX19_05549 0.23 +0.6 254,816 + MPMX19_05549 0.23 +0.2 254,816 + MPMX19_05549 0.23 +1.9 254,816 + MPMX19_05549 0.23 -0.6 254,816 + MPMX19_05549 0.23 -1.5 254,816 + MPMX19_05549 0.23 -0.3 254,816 + MPMX19_05549 0.23 -0.9 254,816 + MPMX19_05549 0.23 -0.3 254,816 + MPMX19_05549 0.23 -0.3 254,816 + MPMX19_05549 0.23 +1.2 254,816 + MPMX19_05549 0.23 +0.7 254,816 + MPMX19_05549 0.23 -0.1 254,816 + MPMX19_05549 0.23 -0.2 254,816 + MPMX19_05549 0.23 +0.3 254,817 - MPMX19_05549 0.24 -0.8 254,817 - MPMX19_05549 0.24 +0.0 254,817 - MPMX19_05549 0.24 -0.4 254,817 - MPMX19_05549 0.24 +0.8 254,817 - MPMX19_05549 0.24 -0.8 254,817 - MPMX19_05549 0.24 +0.1 254,817 - MPMX19_05549 0.24 -0.9 254,817 - MPMX19_05549 0.24 -2.4 254,817 - MPMX19_05549 0.24 +0.4 254,817 - MPMX19_05549 0.24 -0.3 254,817 - MPMX19_05549 0.24 +1.7 254,817 - MPMX19_05549 0.24 -0.8 254,817 - MPMX19_05549 0.24 +0.2 254,817 - MPMX19_05549 0.24 -0.3 254,817 - MPMX19_05549 0.24 +0.4 254,817 - MPMX19_05549 0.24 +0.0 254,817 - MPMX19_05549 0.24 -1.2 254,817 - MPMX19_05549 0.24 -0.8 254,817 - MPMX19_05549 0.24 +1.0 254,817 - MPMX19_05549 0.24 +0.6 254,817 - MPMX19_05549 0.24 -0.2 254,817 - MPMX19_05549 0.24 +1.2 254,882 + MPMX19_05549 0.32 +0.7 254,882 + MPMX19_05549 0.32 +1.1 254,883 - MPMX19_05549 0.32 -0.3 254,883 - MPMX19_05549 0.32 -0.9 254,883 - MPMX19_05549 0.32 -0.9 254,883 - MPMX19_05549 0.32 -0.3 254,945 + MPMX19_05549 0.40 -0.8 254,946 - MPMX19_05549 0.40 +0.7 254,946 - MPMX19_05549 0.40 +0.1 254,946 - MPMX19_05549 0.40 -1.3 254,960 + MPMX19_05549 0.42 -0.2 254,960 + MPMX19_05549 0.42 -0.5 254,960 + MPMX19_05549 0.42 +1.3 254,960 + MPMX19_05549 0.42 +0.4 254,960 + MPMX19_05549 0.42 -0.3 254,960 + MPMX19_05549 0.42 -0.2 254,960 + MPMX19_05549 0.42 -1.2 254,960 + MPMX19_05549 0.42 +0.5 254,960 + MPMX19_05549 0.42 -0.8 254,960 + MPMX19_05549 0.42 -1.3 254,960 + MPMX19_05549 0.42 +0.3 254,960 + MPMX19_05549 0.42 +0.7 254,960 + MPMX19_05549 0.42 +0.3 254,960 + MPMX19_05549 0.42 -0.4 254,960 + MPMX19_05549 0.42 -1.3 254,960 + MPMX19_05549 0.42 -2.5 254,960 + MPMX19_05549 0.42 +0.4 254,960 + MPMX19_05549 0.42 -1.5 254,961 - MPMX19_05549 0.42 +2.0 254,961 - MPMX19_05549 0.42 -1.7 254,961 - MPMX19_05549 0.42 -1.6 254,961 - MPMX19_05549 0.42 -0.3 254,961 - MPMX19_05549 0.42 -0.7 254,961 - MPMX19_05549 0.42 -1.6 254,961 - MPMX19_05549 0.42 +0.1 255,284 + MPMX19_05549 0.83 -1.4 255,284 + MPMX19_05549 0.83 -0.7 255,284 + MPMX19_05549 0.83 +0.4 255,285 - MPMX19_05549 0.83 -2.2 255,285 - MPMX19_05549 0.83 +0.1 255,285 - MPMX19_05549 0.83 +0.4 255,285 - MPMX19_05549 0.83 +0.7 255,353 + -0.1 255,353 + +0.6 255,353 + +0.4 255,353 + -0.1 255,353 + -0.4 255,353 + +1.7 255,353 + +0.8 255,353 + -2.9 255,353 + -0.8 255,353 + +0.4 255,353 + +0.2 255,353 + -0.3 255,353 + -0.0 255,353 + -1.3 255,353 + +1.1 255,353 + -0.5 255,354 - +1.3 255,354 - -0.3 255,354 - +0.5 255,354 - +0.7 255,354 - +0.3 255,354 - -0.9 255,354 - -0.9 255,354 - -0.6 255,354 - -0.7 255,354 - -1.0 255,354 - +0.3 255,354 - -0.6 255,354 - +0.1 255,419 + +0.1 255,419 + +2.0 255,419 + +0.4 255,420 - +0.8 255,420 - +0.9 255,420 - -1.9 255,420 - -0.9 255,521 + +0.7 255,521 + -0.1 255,522 - -1.5 255,761 + +0.3 255,761 + -1.3 255,761 + -0.4 255,761 + +0.5 255,761 + +0.7 255,761 + -1.7 255,762 - +1.5 255,762 - -0.8 255,762 - +0.2 255,762 - -0.1 255,762 - -0.1 255,762 - -0.3 255,762 - +1.2 255,762 - -0.0 255,762 - -0.4 255,827 + MPMX19_05550 0.11 +0.1 255,827 + MPMX19_05550 0.11 -0.3 255,827 + MPMX19_05550 0.11 +1.2 255,827 + MPMX19_05550 0.11 -1.2 255,827 + MPMX19_05550 0.11 +0.2 255,827 + MPMX19_05550 0.11 +0.8 255,827 + MPMX19_05550 0.11 -0.3 255,827 + MPMX19_05550 0.11 +0.3 255,827 + MPMX19_05550 0.11 +1.1 255,828 - MPMX19_05550 0.11 -0.3 255,828 - MPMX19_05550 0.11 +0.1 255,828 - MPMX19_05550 0.11 +0.3 255,828 - MPMX19_05550 0.11 +0.1 255,828 - MPMX19_05550 0.11 -1.2 255,828 - MPMX19_05550 0.11 +0.2 255,828 - MPMX19_05550 0.11 -0.7 255,828 - MPMX19_05550 0.11 +0.3 255,828 - MPMX19_05550 0.11 -1.2 255,828 - MPMX19_05550 0.11 +0.2 255,877 + MPMX19_05550 0.12 -0.1 255,877 + MPMX19_05550 0.12 -0.9 255,877 + MPMX19_05550 0.12 -2.2 255,878 - MPMX19_05550 0.12 -1.5 255,878 - MPMX19_05550 0.12 -0.7 255,878 - MPMX19_05550 0.12 -1.5 255,878 - MPMX19_05550 0.12 -2.7 255,878 - MPMX19_05550 0.12 -1.7 256,352 + MPMX19_05550 0.25 +0.5 256,352 + MPMX19_05550 0.25 +0.4 256,352 + MPMX19_05550 0.25 +1.2 256,353 - MPMX19_05550 0.25 +0.9 256,409 + MPMX19_05550 0.26 +1.0
Or see this region's nucleotide sequence