Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05510 and MPMX19_05511 are separated by 94 nucleotides MPMX19_05511 and MPMX19_05512 are separated by 373 nucleotides MPMX19_05512 and MPMX19_05513 are separated by 115 nucleotides
MPMX19_05510: MPMX19_05510 - hypothetical protein, at 216,259 to 216,549
_05510
MPMX19_05511: MPMX19_05511 - hypothetical protein, at 216,644 to 216,892
_05511
MPMX19_05512: MPMX19_05512 - Homoserine/homoserine lactone efflux protein, at 217,266 to 217,892
_05512
MPMX19_05513: MPMX19_05513 - 3'3'-cGAMP-specific phosphodiesterase 2, at 218,008 to 219,573
_05513
Position (kb) 217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.525 kb on + strand at 216.526 kb on - strand at 216.652 kb on - strand at 216.652 kb on - strand at 216.744 kb on + strand, within MPMX19_05511 at 216.744 kb on + strand, within MPMX19_05511 at 216.744 kb on + strand, within MPMX19_05511 at 216.744 kb on + strand, within MPMX19_05511 at 216.745 kb on - strand, within MPMX19_05511 at 216.745 kb on - strand, within MPMX19_05511 at 216.745 kb on - strand, within MPMX19_05511 at 216.865 kb on + strand, within MPMX19_05511 at 216.865 kb on + strand, within MPMX19_05511 at 216.865 kb on + strand, within MPMX19_05511 at 216.866 kb on - strand, within MPMX19_05511 at 216.866 kb on - strand, within MPMX19_05511 at 216.866 kb on - strand, within MPMX19_05511 at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.077 kb on + strand at 217.243 kb on + strand at 217.244 kb on - strand at 217.244 kb on - strand at 217.249 kb on + strand at 217.249 kb on + strand at 217.249 kb on + strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.518 kb on + strand, within MPMX19_05512 at 217.518 kb on + strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.761 kb on + strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 218.236 kb on + strand, within MPMX19_05513 at 218.236 kb on + strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.519 kb on - strand, within MPMX19_05513 at 218.519 kb on - strand, within MPMX19_05513
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 216,525 + +0.2 216,526 - -1.0 216,652 - +0.1 216,652 - +0.1 216,744 + MPMX19_05511 0.40 +0.4 216,744 + MPMX19_05511 0.40 +0.1 216,744 + MPMX19_05511 0.40 +0.0 216,744 + MPMX19_05511 0.40 +0.6 216,745 - MPMX19_05511 0.41 +0.9 216,745 - MPMX19_05511 0.41 +0.9 216,745 - MPMX19_05511 0.41 -0.2 216,865 + MPMX19_05511 0.89 +0.8 216,865 + MPMX19_05511 0.89 -0.3 216,865 + MPMX19_05511 0.89 -0.2 216,866 - MPMX19_05511 0.89 +1.1 216,866 - MPMX19_05511 0.89 -2.6 216,866 - MPMX19_05511 0.89 -0.2 217,062 + +0.2 217,062 + -0.1 217,062 + -2.3 217,062 + -1.3 217,062 + -0.8 217,062 + +1.9 217,063 - -0.6 217,063 - -1.2 217,063 - -0.6 217,063 - +0.1 217,063 - +0.6 217,077 + -0.5 217,243 + +0.7 217,244 - +0.3 217,244 - +0.7 217,249 + -1.6 217,249 + -1.5 217,249 + +1.4 217,250 - -0.4 217,250 - +0.7 217,250 - +0.9 217,250 - +0.1 217,250 - -0.9 217,353 + MPMX19_05512 0.14 -2.4 217,353 + MPMX19_05512 0.14 +0.9 217,353 + MPMX19_05512 0.14 -1.4 217,353 + MPMX19_05512 0.14 -1.2 217,353 + MPMX19_05512 0.14 -1.0 217,353 + MPMX19_05512 0.14 +0.7 217,353 + MPMX19_05512 0.14 +1.5 217,353 + MPMX19_05512 0.14 +0.3 217,353 + MPMX19_05512 0.14 -1.2 217,353 + MPMX19_05512 0.14 -0.2 217,353 + MPMX19_05512 0.14 -0.5 217,353 + MPMX19_05512 0.14 -2.0 217,353 + MPMX19_05512 0.14 +0.4 217,353 + MPMX19_05512 0.14 -0.3 217,354 - MPMX19_05512 0.14 +0.6 217,354 - MPMX19_05512 0.14 -0.6 217,354 - MPMX19_05512 0.14 -0.6 217,354 - MPMX19_05512 0.14 -0.0 217,354 - MPMX19_05512 0.14 -0.5 217,354 - MPMX19_05512 0.14 -0.1 217,354 - MPMX19_05512 0.14 -0.3 217,354 - MPMX19_05512 0.14 -0.1 217,354 - MPMX19_05512 0.14 +0.6 217,354 - MPMX19_05512 0.14 -0.0 217,354 - MPMX19_05512 0.14 -1.8 217,354 - MPMX19_05512 0.14 +0.1 217,354 - MPMX19_05512 0.14 -0.2 217,354 - MPMX19_05512 0.14 +0.4 217,354 - MPMX19_05512 0.14 -1.0 217,509 + MPMX19_05512 0.39 -1.0 217,509 + MPMX19_05512 0.39 +0.2 217,509 + MPMX19_05512 0.39 +0.7 217,509 + MPMX19_05512 0.39 +0.5 217,510 - MPMX19_05512 0.39 -0.2 217,510 - MPMX19_05512 0.39 -1.2 217,510 - MPMX19_05512 0.39 -1.5 217,510 - MPMX19_05512 0.39 +0.9 217,510 - MPMX19_05512 0.39 +0.0 217,518 + MPMX19_05512 0.40 -2.0 217,518 + MPMX19_05512 0.40 -3.2 217,519 - MPMX19_05512 0.40 -0.1 217,519 - MPMX19_05512 0.40 -0.3 217,519 - MPMX19_05512 0.40 +0.4 217,519 - MPMX19_05512 0.40 -0.6 217,519 - MPMX19_05512 0.40 +0.2 217,519 - MPMX19_05512 0.40 -0.1 217,614 + MPMX19_05512 0.56 -0.6 217,614 + MPMX19_05512 0.56 -0.2 217,614 + MPMX19_05512 0.56 -0.3 217,614 + MPMX19_05512 0.56 +0.2 217,614 + MPMX19_05512 0.56 +0.8 217,614 + MPMX19_05512 0.56 +1.1 217,614 + MPMX19_05512 0.56 -0.9 217,614 + MPMX19_05512 0.56 +1.5 217,614 + MPMX19_05512 0.56 +0.3 217,614 + MPMX19_05512 0.56 -0.8 217,614 + MPMX19_05512 0.56 +0.2 217,614 + MPMX19_05512 0.56 -0.1 217,614 + MPMX19_05512 0.56 +0.4 217,614 + MPMX19_05512 0.56 +0.9 217,614 + MPMX19_05512 0.56 -0.2 217,615 - MPMX19_05512 0.56 -0.5 217,615 - MPMX19_05512 0.56 -1.1 217,615 - MPMX19_05512 0.56 -2.0 217,615 - MPMX19_05512 0.56 -2.4 217,615 - MPMX19_05512 0.56 -0.3 217,615 - MPMX19_05512 0.56 -0.2 217,615 - MPMX19_05512 0.56 +0.1 217,615 - MPMX19_05512 0.56 -0.2 217,615 - MPMX19_05512 0.56 -0.0 217,615 - MPMX19_05512 0.56 +0.1 217,615 - MPMX19_05512 0.56 -0.5 217,615 - MPMX19_05512 0.56 +1.4 217,615 - MPMX19_05512 0.56 +0.8 217,761 + MPMX19_05512 0.79 -0.7 217,762 - MPMX19_05512 0.79 -1.8 217,762 - MPMX19_05512 0.79 +1.2 217,762 - MPMX19_05512 0.79 -1.5 217,914 + -1.1 217,914 + +1.3 217,914 + -0.9 217,914 + -0.8 217,914 + -0.1 217,914 + -0.9 217,914 + -0.6 217,914 + -0.5 217,914 + +0.5 217,914 + +0.3 217,914 + -0.3 217,914 + -0.2 217,914 + +0.5 217,915 - +0.5 217,915 - -2.1 217,915 - +0.1 217,915 - +0.2 217,915 - -0.2 217,916 + -1.6 217,916 + -1.8 217,916 + -0.8 217,916 + -1.5 217,916 + +0.1 217,916 + -1.8 217,916 + +0.8 217,917 - +0.6 217,917 - +1.0 217,917 - -0.0 217,917 - +1.1 217,917 - -0.3 217,917 - -0.4 217,917 - -0.6 217,917 - -1.8 217,917 - +0.5 217,917 - -1.4 217,917 - -0.3 217,917 - -0.9 217,917 - +2.1 218,236 + MPMX19_05513 0.15 -0.3 218,236 + MPMX19_05513 0.15 +0.5 218,237 - MPMX19_05513 0.15 -0.5 218,237 - MPMX19_05513 0.15 -0.6 218,237 - MPMX19_05513 0.15 -1.5 218,237 - MPMX19_05513 0.15 -0.2 218,237 - MPMX19_05513 0.15 +0.5 218,237 - MPMX19_05513 0.15 +0.5 218,237 - MPMX19_05513 0.15 +0.6 218,452 + MPMX19_05513 0.28 +0.7 218,452 + MPMX19_05513 0.28 +0.2 218,452 + MPMX19_05513 0.28 -0.4 218,452 + MPMX19_05513 0.28 -0.1 218,452 + MPMX19_05513 0.28 +1.4 218,452 + MPMX19_05513 0.28 +1.1 218,453 - MPMX19_05513 0.28 +0.4 218,453 - MPMX19_05513 0.28 -0.2 218,453 - MPMX19_05513 0.28 -1.1 218,488 + MPMX19_05513 0.31 -0.3 218,488 + MPMX19_05513 0.31 -0.2 218,488 + MPMX19_05513 0.31 -0.2 218,489 - MPMX19_05513 0.31 -0.4 218,489 - MPMX19_05513 0.31 -1.8 218,489 - MPMX19_05513 0.31 +0.8 218,518 + MPMX19_05513 0.33 -1.6 218,518 + MPMX19_05513 0.33 -0.8 218,518 + MPMX19_05513 0.33 +0.4 218,518 + MPMX19_05513 0.33 -0.4 218,519 - MPMX19_05513 0.33 +1.7 218,519 - MPMX19_05513 0.33 +0.5
Or see this region's nucleotide sequence