Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05448 and MPMX19_05449 are separated by 406 nucleotides
MPMX19_05448: MPMX19_05448 - DNA-invertase hin, at 134,444 to 135,007
_05448
MPMX19_05449: MPMX19_05449 - hypothetical protein, at 135,414 to 135,728
_05449
Position (kb)
135
136 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 134.446 kb on - strand at 134.446 kb on - strand at 134.473 kb on + strand at 134.473 kb on + strand at 134.484 kb on + strand at 134.485 kb on - strand at 134.512 kb on + strand, within MPMX19_05448 at 134.512 kb on + strand, within MPMX19_05448 at 134.512 kb on + strand, within MPMX19_05448 at 134.595 kb on + strand, within MPMX19_05448 at 134.595 kb on + strand, within MPMX19_05448 at 134.595 kb on + strand, within MPMX19_05448 at 134.698 kb on + strand, within MPMX19_05448 at 134.716 kb on + strand, within MPMX19_05448 at 134.717 kb on - strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.763 kb on - strand, within MPMX19_05448 at 134.763 kb on - strand, within MPMX19_05448 at 134.763 kb on - strand, within MPMX19_05448 at 134.992 kb on - strand at 134.992 kb on - strand at 134.997 kb on + strand at 134.997 kb on + strand at 134.997 kb on + strand at 135.051 kb on + strand at 135.137 kb on - strand at 135.154 kb on + strand at 135.155 kb on - strand at 135.155 kb on - strand at 135.155 kb on - strand at 135.171 kb on - strand at 135.191 kb on + strand at 135.248 kb on + strand at 135.248 kb on + strand at 135.248 kb on + strand at 135.248 kb on + strand at 135.249 kb on - strand at 135.249 kb on - strand at 135.249 kb on - strand at 135.298 kb on + strand at 135.298 kb on + strand at 135.298 kb on + strand at 135.299 kb on - strand at 135.299 kb on - strand at 135.314 kb on + strand at 135.315 kb on - strand at 135.315 kb on - strand at 135.315 kb on - strand at 135.315 kb on - strand at 135.443 kb on - strand at 135.443 kb on - strand at 135.500 kb on - strand, within MPMX19_05449 at 135.545 kb on + strand, within MPMX19_05449 at 135.594 kb on + strand, within MPMX19_05449 at 135.594 kb on + strand, within MPMX19_05449 at 135.594 kb on + strand, within MPMX19_05449 at 135.596 kb on + strand, within MPMX19_05449 at 135.597 kb on - strand, within MPMX19_05449 at 135.597 kb on - strand, within MPMX19_05449 at 135.675 kb on + strand, within MPMX19_05449 at 135.675 kb on + strand, within MPMX19_05449 at 135.675 kb on + strand, within MPMX19_05449 at 135.676 kb on - strand, within MPMX19_05449 at 135.676 kb on - strand, within MPMX19_05449 at 135.710 kb on + strand at 135.711 kb on - strand at 135.711 kb on - strand at 135.770 kb on + strand at 135.770 kb on + strand at 135.785 kb on + strand at 135.818 kb on + strand at 135.818 kb on + strand at 135.835 kb on + strand at 135.848 kb on + strand at 135.849 kb on - strand at 135.849 kb on - strand at 135.849 kb on - strand at 135.979 kb on + strand at 135.979 kb on + strand at 135.980 kb on - strand at 135.980 kb on - strand at 135.980 kb on - strand at 135.980 kb on - strand at 136.023 kb on + strand at 136.025 kb on + strand at 136.025 kb on + strand at 136.025 kb on + strand at 136.025 kb on + strand at 136.025 kb on + strand at 136.026 kb on - strand at 136.026 kb on - strand at 136.026 kb on - strand at 136.026 kb on - strand at 136.026 kb on - strand at 136.026 kb on - strand at 136.026 kb on - strand at 136.026 kb on - strand at 136.038 kb on + strand at 136.038 kb on + strand at 136.038 kb on + strand at 136.038 kb on + strand at 136.039 kb on - strand at 136.039 kb on - strand at 136.060 kb on - strand at 136.060 kb on - strand at 136.060 kb on - strand at 136.060 kb on - strand at 136.114 kb on - strand at 136.134 kb on + strand at 136.135 kb on - strand at 136.138 kb on - strand at 136.391 kb on - strand at 136.394 kb on - strand at 136.394 kb on - strand at 136.394 kb on - strand at 136.394 kb on - strand at 136.394 kb on - strand at 136.394 kb on - strand at 136.394 kb on - strand at 136.408 kb on + strand at 136.409 kb on - strand at 136.417 kb on - strand at 136.417 kb on - strand at 136.465 kb on + strand at 136.465 kb on + strand at 136.466 kb on - strand at 136.466 kb on - strand at 136.498 kb on + strand at 136.498 kb on + strand at 136.499 kb on - strand at 136.499 kb on - strand at 136.500 kb on + strand at 136.501 kb on - strand at 136.515 kb on + strand at 136.516 kb on - strand at 136.527 kb on + strand at 136.527 kb on + strand at 136.528 kb on - strand at 136.528 kb on - strand at 136.530 kb on + strand at 136.531 kb on - strand at 136.557 kb on + strand at 136.625 kb on + strand at 136.625 kb on + strand at 136.625 kb on + strand at 136.625 kb on + strand at 136.625 kb on + strand at 136.626 kb on - strand at 136.629 kb on + strand at 136.630 kb on - strand at 136.669 kb on + strand at 136.669 kb on + strand at 136.670 kb on - strand at 136.670 kb on - strand at 136.670 kb on - strand at 136.670 kb on - strand at 136.696 kb on + strand at 136.697 kb on - strand at 136.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 134,446 - -1.5 134,446 - -0.1 134,473 + -1.1 134,473 + +1.0 134,484 + -0.9 134,485 - -0.9 134,512 + MPMX19_05448 0.12 -0.5 134,512 + MPMX19_05448 0.12 +0.9 134,512 + MPMX19_05448 0.12 +1.9 134,595 + MPMX19_05448 0.27 -1.3 134,595 + MPMX19_05448 0.27 -1.3 134,595 + MPMX19_05448 0.27 +1.5 134,698 + MPMX19_05448 0.45 -1.2 134,716 + MPMX19_05448 0.48 -0.9 134,717 - MPMX19_05448 0.48 -0.3 134,762 + MPMX19_05448 0.56 +0.9 134,762 + MPMX19_05448 0.56 -0.8 134,762 + MPMX19_05448 0.56 +0.8 134,762 + MPMX19_05448 0.56 -1.3 134,763 - MPMX19_05448 0.57 +0.7 134,763 - MPMX19_05448 0.57 -1.5 134,763 - MPMX19_05448 0.57 -0.3 134,992 - -0.3 134,992 - +0.7 134,997 + +2.1 134,997 + +0.2 134,997 + +0.4 135,051 + -1.8 135,137 - +1.1 135,154 + -0.3 135,155 - -1.3 135,155 - -1.0 135,155 - -3.4 135,171 - -1.9 135,191 + -1.2 135,248 + +0.3 135,248 + +0.7 135,248 + -0.9 135,248 + -0.9 135,249 - +0.7 135,249 - +0.4 135,249 - -0.4 135,298 + +2.7 135,298 + -1.8 135,298 + -0.0 135,299 - +1.9 135,299 - -0.5 135,314 + -0.6 135,315 - -1.1 135,315 - +0.9 135,315 - +1.7 135,315 - -0.5 135,443 - -0.4 135,443 - -0.9 135,500 - MPMX19_05449 0.27 -1.9 135,545 + MPMX19_05449 0.42 -0.5 135,594 + MPMX19_05449 0.57 -0.6 135,594 + MPMX19_05449 0.57 -2.4 135,594 + MPMX19_05449 0.57 +0.7 135,596 + MPMX19_05449 0.58 +0.9 135,597 - MPMX19_05449 0.58 -0.2 135,597 - MPMX19_05449 0.58 -1.1 135,675 + MPMX19_05449 0.83 -0.8 135,675 + MPMX19_05449 0.83 -0.6 135,675 + MPMX19_05449 0.83 +0.9 135,676 - MPMX19_05449 0.83 -0.6 135,676 - MPMX19_05449 0.83 -2.1 135,710 + -0.5 135,711 - -1.5 135,711 - -0.4 135,770 + -1.5 135,770 + -0.1 135,785 + -0.2 135,818 + -2.6 135,818 + +0.5 135,835 + -1.5 135,848 + -2.1 135,849 - +0.5 135,849 - +1.0 135,849 - +0.7 135,979 + -0.3 135,979 + -0.6 135,980 - +0.4 135,980 - -1.8 135,980 - +0.3 135,980 - -2.1 136,023 + -1.5 136,025 + -1.0 136,025 + -1.8 136,025 + -1.0 136,025 + +0.7 136,025 + -1.1 136,026 - -0.5 136,026 - -1.4 136,026 - -0.3 136,026 - -1.1 136,026 - -0.5 136,026 - +0.1 136,026 - +0.5 136,026 - +0.0 136,038 + -1.0 136,038 + -0.5 136,038 + +2.0 136,038 + +0.6 136,039 - -0.2 136,039 - -0.4 136,060 - -0.9 136,060 - -0.1 136,060 - +1.1 136,060 - -0.9 136,114 - -1.0 136,134 + +0.7 136,135 - +0.2 136,138 - -1.6 136,391 - -0.6 136,394 - -0.1 136,394 - -0.8 136,394 - -1.8 136,394 - -1.2 136,394 - -0.8 136,394 - -0.6 136,394 - -0.0 136,408 + +1.5 136,409 - -1.3 136,417 - +1.1 136,417 - -1.6 136,465 + -0.5 136,465 + +0.4 136,466 - -0.1 136,466 - -0.3 136,498 + -0.2 136,498 + -1.5 136,499 - +0.4 136,499 - +0.1 136,500 + -1.3 136,501 - +0.2 136,515 + +0.2 136,516 - -1.9 136,527 + -1.1 136,527 + +0.3 136,528 - -0.7 136,528 - +0.4 136,530 + +0.1 136,531 - -0.9 136,557 + -0.5 136,625 + -0.7 136,625 + -0.0 136,625 + -1.5 136,625 + -0.6 136,625 + +0.9 136,626 - -0.6 136,629 + +1.3 136,630 - -0.3 136,669 + +1.0 136,669 + -0.9 136,670 - -1.5 136,670 - +1.7 136,670 - -1.3 136,670 - +0.0 136,696 + +0.1 136,697 - +1.3 136,697 - -1.1
Or see this region's nucleotide sequence