Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05400 and MPMX19_05401 are separated by 83 nucleotides MPMX19_05401 and MPMX19_05402 are separated by 91 nucleotides MPMX19_05402 and MPMX19_05403 are separated by 121 nucleotides
MPMX19_05400: MPMX19_05400 - hypothetical protein, at 79,257 to 81,641
_05400
MPMX19_05401: MPMX19_05401 - 2-methylisocitrate lyase, at 81,725 to 82,570
_05401
MPMX19_05402: MPMX19_05402 - hypothetical protein, at 82,662 to 83,129
_05402
MPMX19_05403: MPMX19_05403 - hypothetical protein, at 83,251 to 84,000
_05403
Position (kb) 81
82
83 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 80.953 kb on - strand, within MPMX19_05400 at 80.953 kb on - strand, within MPMX19_05400 at 80.953 kb on - strand, within MPMX19_05400 at 80.953 kb on - strand, within MPMX19_05400 at 81.013 kb on - strand, within MPMX19_05400 at 81.036 kb on + strand, within MPMX19_05400 at 81.036 kb on + strand, within MPMX19_05400 at 81.036 kb on + strand, within MPMX19_05400 at 81.037 kb on - strand, within MPMX19_05400 at 81.037 kb on - strand, within MPMX19_05400 at 81.037 kb on - strand, within MPMX19_05400 at 81.037 kb on - strand, within MPMX19_05400 at 81.037 kb on - strand, within MPMX19_05400 at 81.054 kb on + strand, within MPMX19_05400 at 81.054 kb on + strand, within MPMX19_05400 at 81.054 kb on + strand, within MPMX19_05400 at 81.055 kb on - strand, within MPMX19_05400 at 81.055 kb on - strand, within MPMX19_05400 at 81.055 kb on - strand, within MPMX19_05400 at 81.055 kb on - strand, within MPMX19_05400 at 81.055 kb on - strand, within MPMX19_05400 at 81.055 kb on - strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.060 kb on + strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.061 kb on - strand, within MPMX19_05400 at 81.153 kb on + strand, within MPMX19_05400 at 81.153 kb on + strand, within MPMX19_05400 at 81.153 kb on + strand, within MPMX19_05400 at 81.153 kb on + strand, within MPMX19_05400 at 81.153 kb on + strand, within MPMX19_05400 at 81.153 kb on + strand, within MPMX19_05400 at 81.153 kb on + strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.154 kb on - strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.225 kb on + strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.226 kb on - strand, within MPMX19_05400 at 81.279 kb on + strand, within MPMX19_05400 at 81.279 kb on + strand, within MPMX19_05400 at 81.279 kb on + strand, within MPMX19_05400 at 81.279 kb on + strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.280 kb on - strand, within MPMX19_05400 at 81.426 kb on + strand at 81.427 kb on - strand at 81.427 kb on - strand at 81.427 kb on - strand at 81.427 kb on - strand at 81.427 kb on - strand at 81.427 kb on - strand at 81.427 kb on - strand at 81.427 kb on - strand at 81.465 kb on + strand at 81.466 kb on - strand at 81.466 kb on - strand at 81.466 kb on - strand at 81.466 kb on - strand at 81.640 kb on - strand at 81.640 kb on - strand at 81.655 kb on + strand at 81.656 kb on - strand at 81.656 kb on - strand at 81.656 kb on - strand at 81.656 kb on - strand at 81.656 kb on - strand at 81.677 kb on - strand at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.023 kb on + strand, within MPMX19_05401 at 82.024 kb on - strand, within MPMX19_05401 at 82.024 kb on - strand, within MPMX19_05401 at 82.050 kb on + strand, within MPMX19_05401 at 82.051 kb on - strand, within MPMX19_05401 at 82.051 kb on - strand, within MPMX19_05401 at 82.051 kb on - strand, within MPMX19_05401 at 82.194 kb on + strand, within MPMX19_05401 at 82.195 kb on - strand, within MPMX19_05401 at 82.195 kb on - strand, within MPMX19_05401 at 82.195 kb on - strand, within MPMX19_05401 at 82.195 kb on - strand, within MPMX19_05401 at 82.608 kb on - strand at 82.699 kb on + strand at 82.699 kb on + strand at 82.699 kb on + strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 83.247 kb on - strand at 83.247 kb on - strand at 83.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 80,953 - MPMX19_05400 0.71 -0.2 80,953 - MPMX19_05400 0.71 +0.6 80,953 - MPMX19_05400 0.71 -0.2 80,953 - MPMX19_05400 0.71 -0.1 81,013 - MPMX19_05400 0.74 +1.1 81,036 + MPMX19_05400 0.75 -0.7 81,036 + MPMX19_05400 0.75 -1.3 81,036 + MPMX19_05400 0.75 -1.8 81,037 - MPMX19_05400 0.75 -0.9 81,037 - MPMX19_05400 0.75 -0.6 81,037 - MPMX19_05400 0.75 +0.3 81,037 - MPMX19_05400 0.75 -0.0 81,037 - MPMX19_05400 0.75 -0.6 81,054 + MPMX19_05400 0.75 -0.9 81,054 + MPMX19_05400 0.75 +0.9 81,054 + MPMX19_05400 0.75 +0.1 81,055 - MPMX19_05400 0.75 +0.9 81,055 - MPMX19_05400 0.75 -1.0 81,055 - MPMX19_05400 0.75 +0.3 81,055 - MPMX19_05400 0.75 -0.1 81,055 - MPMX19_05400 0.75 +0.2 81,055 - MPMX19_05400 0.75 -0.0 81,060 + MPMX19_05400 0.76 -1.3 81,060 + MPMX19_05400 0.76 -1.0 81,060 + MPMX19_05400 0.76 -1.2 81,060 + MPMX19_05400 0.76 -0.5 81,060 + MPMX19_05400 0.76 -0.1 81,060 + MPMX19_05400 0.76 +0.8 81,060 + MPMX19_05400 0.76 -0.1 81,060 + MPMX19_05400 0.76 +0.7 81,060 + MPMX19_05400 0.76 +0.1 81,060 + MPMX19_05400 0.76 +0.3 81,060 + MPMX19_05400 0.76 +0.3 81,060 + MPMX19_05400 0.76 -1.9 81,060 + MPMX19_05400 0.76 -1.1 81,060 + MPMX19_05400 0.76 -0.3 81,060 + MPMX19_05400 0.76 -0.4 81,060 + MPMX19_05400 0.76 +1.3 81,060 + MPMX19_05400 0.76 +0.9 81,060 + MPMX19_05400 0.76 -0.2 81,060 + MPMX19_05400 0.76 -0.1 81,060 + MPMX19_05400 0.76 -1.3 81,061 - MPMX19_05400 0.76 +0.2 81,061 - MPMX19_05400 0.76 +1.1 81,061 - MPMX19_05400 0.76 -0.6 81,061 - MPMX19_05400 0.76 -0.4 81,061 - MPMX19_05400 0.76 -1.3 81,061 - MPMX19_05400 0.76 +0.2 81,061 - MPMX19_05400 0.76 -0.6 81,061 - MPMX19_05400 0.76 -1.7 81,153 + MPMX19_05400 0.79 -0.1 81,153 + MPMX19_05400 0.79 +1.0 81,153 + MPMX19_05400 0.79 +0.0 81,153 + MPMX19_05400 0.79 +0.7 81,153 + MPMX19_05400 0.79 +0.5 81,153 + MPMX19_05400 0.79 +0.4 81,153 + MPMX19_05400 0.79 -0.5 81,154 - MPMX19_05400 0.80 +0.9 81,154 - MPMX19_05400 0.80 -0.3 81,154 - MPMX19_05400 0.80 -0.8 81,154 - MPMX19_05400 0.80 +0.6 81,154 - MPMX19_05400 0.80 -1.3 81,154 - MPMX19_05400 0.80 +0.7 81,154 - MPMX19_05400 0.80 +0.1 81,154 - MPMX19_05400 0.80 -2.0 81,154 - MPMX19_05400 0.80 -0.6 81,154 - MPMX19_05400 0.80 +0.0 81,225 + MPMX19_05400 0.83 +0.6 81,225 + MPMX19_05400 0.83 +0.1 81,225 + MPMX19_05400 0.83 -1.1 81,225 + MPMX19_05400 0.83 -1.5 81,225 + MPMX19_05400 0.83 +0.5 81,225 + MPMX19_05400 0.83 -0.9 81,225 + MPMX19_05400 0.83 +1.9 81,225 + MPMX19_05400 0.83 +1.4 81,225 + MPMX19_05400 0.83 -1.4 81,226 - MPMX19_05400 0.83 +0.8 81,226 - MPMX19_05400 0.83 -0.4 81,226 - MPMX19_05400 0.83 +0.1 81,226 - MPMX19_05400 0.83 +0.1 81,226 - MPMX19_05400 0.83 -1.3 81,226 - MPMX19_05400 0.83 -0.7 81,226 - MPMX19_05400 0.83 -0.1 81,226 - MPMX19_05400 0.83 +0.7 81,226 - MPMX19_05400 0.83 +0.2 81,226 - MPMX19_05400 0.83 +0.7 81,226 - MPMX19_05400 0.83 +0.4 81,279 + MPMX19_05400 0.85 -0.5 81,279 + MPMX19_05400 0.85 +0.5 81,279 + MPMX19_05400 0.85 +0.8 81,279 + MPMX19_05400 0.85 +1.3 81,280 - MPMX19_05400 0.85 -1.8 81,280 - MPMX19_05400 0.85 -1.1 81,280 - MPMX19_05400 0.85 +0.1 81,280 - MPMX19_05400 0.85 +1.7 81,280 - MPMX19_05400 0.85 +1.9 81,280 - MPMX19_05400 0.85 -2.5 81,280 - MPMX19_05400 0.85 +0.2 81,280 - MPMX19_05400 0.85 -0.5 81,280 - MPMX19_05400 0.85 +1.7 81,426 + -0.0 81,427 - -0.3 81,427 - -0.3 81,427 - +0.2 81,427 - -0.7 81,427 - +0.4 81,427 - -0.2 81,427 - -0.5 81,427 - -0.9 81,465 + +0.8 81,466 - -1.6 81,466 - -1.4 81,466 - -2.0 81,466 - -0.6 81,640 - -0.9 81,640 - +0.9 81,655 + +0.4 81,656 - -0.2 81,656 - -0.8 81,656 - +0.5 81,656 - +0.5 81,656 - -0.2 81,677 - +2.4 82,023 + MPMX19_05401 0.35 -1.1 82,023 + MPMX19_05401 0.35 -0.2 82,023 + MPMX19_05401 0.35 -0.9 82,023 + MPMX19_05401 0.35 +1.4 82,023 + MPMX19_05401 0.35 +0.7 82,023 + MPMX19_05401 0.35 -1.6 82,023 + MPMX19_05401 0.35 -2.4 82,023 + MPMX19_05401 0.35 -0.6 82,023 + MPMX19_05401 0.35 +0.2 82,024 - MPMX19_05401 0.35 +0.1 82,024 - MPMX19_05401 0.35 -0.1 82,050 + MPMX19_05401 0.38 +0.4 82,051 - MPMX19_05401 0.39 -2.0 82,051 - MPMX19_05401 0.39 +0.3 82,051 - MPMX19_05401 0.39 -4.2 82,194 + MPMX19_05401 0.55 -2.0 82,195 - MPMX19_05401 0.56 -0.8 82,195 - MPMX19_05401 0.56 +0.7 82,195 - MPMX19_05401 0.56 -0.8 82,195 - MPMX19_05401 0.56 +1.1 82,608 - -1.1 82,699 + -0.0 82,699 + -1.2 82,699 + -1.6 82,700 - -1.0 82,700 - +0.6 82,700 - -1.1 82,700 - +1.2 82,700 - +0.1 82,700 - -0.9 82,700 - -1.6 82,837 + MPMX19_05402 0.37 -2.6 82,837 + MPMX19_05402 0.37 +0.5 82,837 + MPMX19_05402 0.37 +0.4 82,837 + MPMX19_05402 0.37 -1.0 82,837 + MPMX19_05402 0.37 +1.1 82,837 + MPMX19_05402 0.37 -0.1 82,837 + MPMX19_05402 0.37 +0.5 82,837 + MPMX19_05402 0.37 -1.3 82,837 + MPMX19_05402 0.37 +0.6 82,837 + MPMX19_05402 0.37 -1.1 82,837 + MPMX19_05402 0.37 -0.2 82,838 - MPMX19_05402 0.38 -0.0 82,838 - MPMX19_05402 0.38 -0.8 82,838 - MPMX19_05402 0.38 -0.3 82,838 - MPMX19_05402 0.38 +0.7 82,838 - MPMX19_05402 0.38 +0.2 82,838 - MPMX19_05402 0.38 -0.1 82,838 - MPMX19_05402 0.38 +0.4 82,838 - MPMX19_05402 0.38 +0.1 82,838 - MPMX19_05402 0.38 -1.4 82,838 - MPMX19_05402 0.38 +0.7 83,247 - +0.5 83,247 - -0.2 83,247 - -1.2
Or see this region's nucleotide sequence