Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05201 and MPMX19_05202 overlap by 4 nucleotides MPMX19_05202 and MPMX19_05203 are separated by 0 nucleotides MPMX19_05203 and MPMX19_05204 overlap by 4 nucleotides
MPMX19_05201: MPMX19_05201 - Hydroxycarboxylate dehydrogenase B, at 705,262 to 706,326
_05201
MPMX19_05202: MPMX19_05202 - Tryptophan synthase beta chain, at 706,323 to 707,603
_05202
MPMX19_05203: MPMX19_05203 - hypothetical protein, at 707,604 to 708,515
_05203
MPMX19_05204: MPMX19_05204 - Vitamin B12 import ATP-binding protein BtuD, at 708,512 to 709,348
_05204
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1 at 705.617 kb on + strand, within MPMX19_05201 at 705.618 kb on - strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.951 kb on - strand, within MPMX19_05201 at 705.969 kb on + strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.351 kb on + strand at 706.351 kb on + strand at 706.351 kb on + strand at 706.352 kb on - strand at 706.352 kb on - strand at 706.402 kb on + strand at 706.402 kb on + strand at 706.478 kb on + strand, within MPMX19_05202 at 706.478 kb on + strand, within MPMX19_05202 at 706.478 kb on + strand, within MPMX19_05202 at 706.479 kb on - strand, within MPMX19_05202 at 706.481 kb on - strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.490 kb on - strand, within MPMX19_05202 at 706.490 kb on - strand, within MPMX19_05202 at 707.444 kb on - strand, within MPMX19_05202 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.722 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.890 kb on + strand, within MPMX19_05203 at 707.891 kb on - strand, within MPMX19_05203 at 707.891 kb on - strand, within MPMX19_05203 at 707.912 kb on - strand, within MPMX19_05203 at 707.912 kb on - strand, within MPMX19_05203 at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 705,617 + MPMX19_05201 0.33 +0.3 705,618 - MPMX19_05201 0.33 +0.7 705,911 + MPMX19_05201 0.61 +0.2 705,911 + MPMX19_05201 0.61 -0.2 705,911 + MPMX19_05201 0.61 +0.1 705,911 + MPMX19_05201 0.61 -0.1 705,911 + MPMX19_05201 0.61 -0.4 705,912 - MPMX19_05201 0.61 -0.3 705,912 - MPMX19_05201 0.61 +0.8 705,912 - MPMX19_05201 0.61 -0.4 705,951 - MPMX19_05201 0.65 +0.1 705,969 + MPMX19_05201 0.66 -2.3 706,164 - MPMX19_05201 0.85 +0.2 706,164 - MPMX19_05201 0.85 +0.7 706,164 - MPMX19_05201 0.85 -0.1 706,351 + -2.5 706,351 + +1.1 706,351 + +0.2 706,352 - +0.5 706,352 - -1.9 706,402 + -0.5 706,402 + -0.4 706,478 + MPMX19_05202 0.12 -1.6 706,478 + MPMX19_05202 0.12 -0.3 706,478 + MPMX19_05202 0.12 +0.6 706,479 - MPMX19_05202 0.12 -1.2 706,481 - MPMX19_05202 0.12 -0.7 706,489 + MPMX19_05202 0.13 -1.0 706,489 + MPMX19_05202 0.13 -0.7 706,489 + MPMX19_05202 0.13 -1.4 706,489 + MPMX19_05202 0.13 -1.3 706,490 - MPMX19_05202 0.13 -0.8 706,490 - MPMX19_05202 0.13 -1.5 707,444 - MPMX19_05202 0.88 +1.1 707,722 + MPMX19_05203 0.13 +0.0 707,722 + MPMX19_05203 0.13 +0.7 707,722 + MPMX19_05203 0.13 -0.9 707,722 + MPMX19_05203 0.13 +0.6 707,722 + MPMX19_05203 0.13 -0.1 707,890 + MPMX19_05203 0.31 +1.1 707,890 + MPMX19_05203 0.31 +0.1 707,890 + MPMX19_05203 0.31 +1.0 707,891 - MPMX19_05203 0.31 +0.5 707,891 - MPMX19_05203 0.31 +1.5 707,912 - MPMX19_05203 0.34 +1.0 707,912 - MPMX19_05203 0.34 -1.4 708,442 + -0.1 708,442 + -0.6 708,442 + -0.1 708,442 + +0.2 708,443 - +0.9 708,443 - -1.7 708,443 - -0.4 708,443 - +0.0 708,443 - -1.1 708,443 - +0.0 708,443 - -0.2
Or see this region's nucleotide sequence