Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05118 and MPMX19_05119 are separated by 138 nucleotides MPMX19_05119 and MPMX19_05120 are separated by 456 nucleotides
MPMX19_05118: MPMX19_05118 - Phosphogluconate dehydratase, at 603,292 to 605,130
_05118
MPMX19_05119: MPMX19_05119 - Glucose-6-phosphate 1-dehydrogenase, at 605,269 to 606,789
_05119
MPMX19_05120: MPMX19_05120 - 16S ribosomal RNA, at 607,246 to 608,729
_05120
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 605.317 kb on + strand at 605.317 kb on + strand at 605.317 kb on + strand at 605.317 kb on + strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.318 kb on - strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.374 kb on + strand at 605.375 kb on - strand at 605.375 kb on - strand at 605.375 kb on - strand at 605.375 kb on - strand at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.548 kb on + strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.549 kb on - strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.647 kb on + strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.648 kb on - strand, within MPMX19_05119 at 605.818 kb on + strand, within MPMX19_05119 at 605.819 kb on - strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.833 kb on + strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.834 kb on - strand, within MPMX19_05119 at 605.842 kb on - strand, within MPMX19_05119 at 605.974 kb on + strand, within MPMX19_05119 at 605.975 kb on - strand, within MPMX19_05119 at 605.975 kb on - strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.977 kb on + strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 605.978 kb on - strand, within MPMX19_05119 at 606.164 kb on - strand, within MPMX19_05119 at 606.164 kb on - strand, within MPMX19_05119 at 606.202 kb on + strand, within MPMX19_05119 at 606.203 kb on - strand, within MPMX19_05119 at 606.273 kb on + strand, within MPMX19_05119 at 606.273 kb on + strand, within MPMX19_05119 at 606.273 kb on + strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.274 kb on - strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.301 kb on + strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.302 kb on - strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.401 kb on + strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.402 kb on - strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.556 kb on + strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.557 kb on - strand, within MPMX19_05119 at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.691 kb on + strand at 606.692 kb on - strand at 606.692 kb on - strand at 606.692 kb on - strand at 606.692 kb on - strand at 606.693 kb on + strand at 606.693 kb on + strand at 606.694 kb on - strand at 606.694 kb on - strand at 606.694 kb on - strand at 606.694 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand at 606.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 605,317 + -0.1 605,317 + -0.5 605,317 + -0.5 605,317 + -1.9 605,318 - +1.2 605,318 - -0.5 605,318 - +0.1 605,318 - +0.2 605,318 - -1.3 605,318 - -1.5 605,319 + +0.9 605,319 + +0.1 605,319 + +0.9 605,319 + +1.2 605,319 + -0.3 605,319 + -0.8 605,319 + -0.3 605,319 + -0.8 605,319 + -0.3 605,319 + -0.5 605,319 + +0.9 605,319 + -0.8 605,319 + -1.8 605,319 + -0.6 605,319 + -1.1 605,319 + +0.2 605,319 + -0.1 605,320 - -1.1 605,320 - -0.4 605,320 - -0.1 605,320 - -0.8 605,320 - -0.8 605,320 - -0.3 605,320 - -1.0 605,320 - -0.7 605,320 - -0.8 605,320 - -1.2 605,320 - -0.7 605,320 - -0.1 605,320 - -0.6 605,320 - -2.1 605,320 - -0.0 605,320 - +0.5 605,374 + -1.1 605,374 + +0.9 605,374 + -0.5 605,374 + +2.5 605,374 + +0.1 605,374 + -1.8 605,374 + -1.0 605,374 + +0.3 605,375 - -0.6 605,375 - +0.7 605,375 - -0.5 605,375 - -3.0 605,548 + MPMX19_05119 0.18 -2.7 605,548 + MPMX19_05119 0.18 -0.1 605,548 + MPMX19_05119 0.18 -1.2 605,548 + MPMX19_05119 0.18 -0.3 605,548 + MPMX19_05119 0.18 -1.1 605,548 + MPMX19_05119 0.18 -0.1 605,548 + MPMX19_05119 0.18 +0.7 605,548 + MPMX19_05119 0.18 +0.1 605,548 + MPMX19_05119 0.18 -0.3 605,548 + MPMX19_05119 0.18 -0.8 605,548 + MPMX19_05119 0.18 +1.1 605,548 + MPMX19_05119 0.18 -0.8 605,548 + MPMX19_05119 0.18 -0.1 605,548 + MPMX19_05119 0.18 +0.4 605,548 + MPMX19_05119 0.18 +1.5 605,548 + MPMX19_05119 0.18 -2.5 605,548 + MPMX19_05119 0.18 -1.3 605,548 + MPMX19_05119 0.18 -1.7 605,548 + MPMX19_05119 0.18 -1.3 605,549 - MPMX19_05119 0.18 -1.3 605,549 - MPMX19_05119 0.18 +0.2 605,549 - MPMX19_05119 0.18 -0.8 605,549 - MPMX19_05119 0.18 -0.1 605,549 - MPMX19_05119 0.18 -1.3 605,549 - MPMX19_05119 0.18 +0.5 605,549 - MPMX19_05119 0.18 -2.0 605,549 - MPMX19_05119 0.18 -0.8 605,549 - MPMX19_05119 0.18 -1.3 605,549 - MPMX19_05119 0.18 -1.5 605,647 + MPMX19_05119 0.25 -0.7 605,647 + MPMX19_05119 0.25 +1.5 605,647 + MPMX19_05119 0.25 -3.0 605,647 + MPMX19_05119 0.25 -1.6 605,648 - MPMX19_05119 0.25 -0.1 605,648 - MPMX19_05119 0.25 +0.2 605,648 - MPMX19_05119 0.25 +0.5 605,648 - MPMX19_05119 0.25 -0.1 605,818 + MPMX19_05119 0.36 -2.6 605,819 - MPMX19_05119 0.36 +0.1 605,833 + MPMX19_05119 0.37 -1.5 605,833 + MPMX19_05119 0.37 -2.0 605,833 + MPMX19_05119 0.37 -0.5 605,833 + MPMX19_05119 0.37 -0.1 605,833 + MPMX19_05119 0.37 -1.1 605,834 - MPMX19_05119 0.37 -0.6 605,834 - MPMX19_05119 0.37 -2.4 605,834 - MPMX19_05119 0.37 -1.6 605,834 - MPMX19_05119 0.37 -0.6 605,834 - MPMX19_05119 0.37 -0.3 605,834 - MPMX19_05119 0.37 -2.3 605,842 - MPMX19_05119 0.38 +0.2 605,974 + MPMX19_05119 0.46 +1.1 605,975 - MPMX19_05119 0.46 -1.6 605,975 - MPMX19_05119 0.46 -1.0 605,977 + MPMX19_05119 0.47 -1.5 605,977 + MPMX19_05119 0.47 -0.8 605,977 + MPMX19_05119 0.47 -1.5 605,977 + MPMX19_05119 0.47 -1.3 605,977 + MPMX19_05119 0.47 -0.6 605,977 + MPMX19_05119 0.47 -0.8 605,977 + MPMX19_05119 0.47 -1.1 605,977 + MPMX19_05119 0.47 -2.0 605,977 + MPMX19_05119 0.47 +0.6 605,977 + MPMX19_05119 0.47 -0.3 605,977 + MPMX19_05119 0.47 +0.1 605,977 + MPMX19_05119 0.47 -1.2 605,977 + MPMX19_05119 0.47 -1.0 605,977 + MPMX19_05119 0.47 -1.7 605,977 + MPMX19_05119 0.47 -0.8 605,977 + MPMX19_05119 0.47 +0.3 605,978 - MPMX19_05119 0.47 +0.2 605,978 - MPMX19_05119 0.47 -0.5 605,978 - MPMX19_05119 0.47 -1.2 605,978 - MPMX19_05119 0.47 +1.1 605,978 - MPMX19_05119 0.47 -0.5 605,978 - MPMX19_05119 0.47 -0.4 605,978 - MPMX19_05119 0.47 -0.3 605,978 - MPMX19_05119 0.47 +0.6 605,978 - MPMX19_05119 0.47 -1.5 605,978 - MPMX19_05119 0.47 +0.9 605,978 - MPMX19_05119 0.47 -1.6 605,978 - MPMX19_05119 0.47 -1.1 605,978 - MPMX19_05119 0.47 -1.3 605,978 - MPMX19_05119 0.47 -1.3 605,978 - MPMX19_05119 0.47 -0.9 605,978 - MPMX19_05119 0.47 +0.1 605,978 - MPMX19_05119 0.47 -3.0 605,978 - MPMX19_05119 0.47 -0.1 605,978 - MPMX19_05119 0.47 -0.8 606,164 - MPMX19_05119 0.59 -0.3 606,164 - MPMX19_05119 0.59 -0.5 606,202 + MPMX19_05119 0.61 -1.3 606,203 - MPMX19_05119 0.61 -0.8 606,273 + MPMX19_05119 0.66 +0.6 606,273 + MPMX19_05119 0.66 -0.6 606,273 + MPMX19_05119 0.66 +0.5 606,274 - MPMX19_05119 0.66 -1.5 606,274 - MPMX19_05119 0.66 -1.1 606,274 - MPMX19_05119 0.66 -0.8 606,274 - MPMX19_05119 0.66 -2.2 606,274 - MPMX19_05119 0.66 +0.9 606,301 + MPMX19_05119 0.68 +0.2 606,301 + MPMX19_05119 0.68 -1.7 606,301 + MPMX19_05119 0.68 +1.1 606,301 + MPMX19_05119 0.68 +0.9 606,301 + MPMX19_05119 0.68 +1.2 606,301 + MPMX19_05119 0.68 -0.1 606,302 - MPMX19_05119 0.68 -1.5 606,302 - MPMX19_05119 0.68 -1.0 606,302 - MPMX19_05119 0.68 -0.1 606,302 - MPMX19_05119 0.68 -1.1 606,302 - MPMX19_05119 0.68 -0.3 606,302 - MPMX19_05119 0.68 +0.1 606,401 + MPMX19_05119 0.74 -1.8 606,401 + MPMX19_05119 0.74 +0.5 606,401 + MPMX19_05119 0.74 +0.3 606,401 + MPMX19_05119 0.74 +0.2 606,401 + MPMX19_05119 0.74 -1.8 606,401 + MPMX19_05119 0.74 -1.5 606,401 + MPMX19_05119 0.74 -0.2 606,401 + MPMX19_05119 0.74 -0.8 606,401 + MPMX19_05119 0.74 -1.8 606,401 + MPMX19_05119 0.74 -0.8 606,401 + MPMX19_05119 0.74 -0.1 606,401 + MPMX19_05119 0.74 -1.8 606,402 - MPMX19_05119 0.74 -2.0 606,402 - MPMX19_05119 0.74 -1.3 606,402 - MPMX19_05119 0.74 -1.5 606,402 - MPMX19_05119 0.74 -2.3 606,402 - MPMX19_05119 0.74 -2.0 606,402 - MPMX19_05119 0.74 -0.4 606,402 - MPMX19_05119 0.74 -1.2 606,402 - MPMX19_05119 0.74 -1.5 606,402 - MPMX19_05119 0.74 -0.9 606,402 - MPMX19_05119 0.74 -0.6 606,402 - MPMX19_05119 0.74 +0.5 606,402 - MPMX19_05119 0.74 -0.3 606,402 - MPMX19_05119 0.74 -2.0 606,556 + MPMX19_05119 0.85 -0.3 606,556 + MPMX19_05119 0.85 +0.9 606,556 + MPMX19_05119 0.85 +0.3 606,556 + MPMX19_05119 0.85 -1.2 606,556 + MPMX19_05119 0.85 -2.3 606,556 + MPMX19_05119 0.85 -1.1 606,556 + MPMX19_05119 0.85 +0.2 606,556 + MPMX19_05119 0.85 -2.3 606,556 + MPMX19_05119 0.85 -0.8 606,556 + MPMX19_05119 0.85 -0.5 606,557 - MPMX19_05119 0.85 -1.4 606,557 - MPMX19_05119 0.85 -0.5 606,557 - MPMX19_05119 0.85 -1.8 606,557 - MPMX19_05119 0.85 -2.1 606,557 - MPMX19_05119 0.85 -0.8 606,557 - MPMX19_05119 0.85 -0.6 606,691 + -2.2 606,691 + -0.8 606,691 + -0.7 606,691 + -3.0 606,691 + -2.1 606,691 + -0.3 606,691 + -1.2 606,691 + -0.3 606,691 + +0.1 606,691 + -1.7 606,691 + -0.7 606,691 + -0.7 606,692 - -0.9 606,692 - -1.0 606,692 - -0.3 606,692 - -1.3 606,693 + -1.4 606,693 + -1.8 606,694 - -1.1 606,694 - -0.5 606,694 - +0.3 606,694 - -1.8 606,892 - -1.0 606,892 - +1.1 606,892 - -1.2 606,892 - -0.4 606,892 - -0.4 606,892 - -1.8 606,892 - -0.7 606,892 - -1.1
Or see this region's nucleotide sequence