Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04877 and MPMX19_04878 are separated by 114 nucleotides MPMX19_04878 and MPMX19_04879 are separated by 293 nucleotides MPMX19_04879 and MPMX19_04880 are separated by 127 nucleotides
MPMX19_04877: MPMX19_04877 - hypothetical protein, at 320,210 to 322,096
_04877
MPMX19_04878: MPMX19_04878 - Agmatine deiminase, at 322,211 to 323,254
_04878
MPMX19_04879: MPMX19_04879 - hypothetical protein, at 323,548 to 323,670
_04879
MPMX19_04880: MPMX19_04880 - Inner membrane ABC transporter permease protein YdcV, at 323,798 to 324,631
_04880
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.340 kb on - strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 322.070 kb on + strand at 322.070 kb on + strand at 322.070 kb on + strand at 322.070 kb on + strand at 322.071 kb on - strand at 322.270 kb on - strand at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.398 kb on + strand, within MPMX19_04878 at 322.398 kb on + strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 323.097 kb on + strand, within MPMX19_04878 at 323.097 kb on + strand, within MPMX19_04878 at 323.097 kb on + strand, within MPMX19_04878 at 323.097 kb on + strand, within MPMX19_04878 at 323.097 kb on + strand, within MPMX19_04878 at 323.098 kb on - strand, within MPMX19_04878 at 323.268 kb on + strand at 323.269 kb on - strand at 323.438 kb on + strand at 323.438 kb on + strand at 323.439 kb on - strand at 323.439 kb on - strand at 323.439 kb on - strand at 323.439 kb on - strand at 323.550 kb on - strand at 323.606 kb on + strand, within MPMX19_04879 at 323.607 kb on - strand, within MPMX19_04879 at 323.708 kb on + strand at 323.708 kb on + strand at 323.708 kb on + strand at 323.708 kb on + strand at 323.709 kb on - strand at 323.709 kb on - strand at 323.709 kb on - strand at 323.709 kb on - strand at 323.709 kb on - strand at 323.709 kb on - strand at 323.709 kb on - strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.768 kb on + strand at 323.769 kb on - strand at 323.769 kb on - strand at 323.769 kb on - strand at 323.769 kb on - strand at 323.769 kb on - strand at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.186 kb on + strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880 at 324.187 kb on - strand, within MPMX19_04880
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 321,306 + MPMX19_04877 0.58 -1.2 321,306 + MPMX19_04877 0.58 +2.3 321,306 + MPMX19_04877 0.58 -1.5 321,306 + MPMX19_04877 0.58 -0.3 321,306 + MPMX19_04877 0.58 +0.9 321,306 + MPMX19_04877 0.58 +0.7 321,307 - MPMX19_04877 0.58 -1.5 321,307 - MPMX19_04877 0.58 -0.4 321,307 - MPMX19_04877 0.58 +0.4 321,307 - MPMX19_04877 0.58 -0.3 321,307 - MPMX19_04877 0.58 -0.8 321,307 - MPMX19_04877 0.58 -0.4 321,340 - MPMX19_04877 0.60 +0.9 321,771 + MPMX19_04877 0.83 -0.9 321,771 + MPMX19_04877 0.83 -0.3 321,771 + MPMX19_04877 0.83 -1.9 321,771 + MPMX19_04877 0.83 -0.2 321,771 + MPMX19_04877 0.83 +0.4 321,771 + MPMX19_04877 0.83 +0.1 321,771 + MPMX19_04877 0.83 +0.7 321,771 + MPMX19_04877 0.83 -0.6 321,771 + MPMX19_04877 0.83 +0.1 321,772 - MPMX19_04877 0.83 -0.6 321,772 - MPMX19_04877 0.83 -0.7 321,772 - MPMX19_04877 0.83 -2.4 321,772 - MPMX19_04877 0.83 +0.9 321,772 - MPMX19_04877 0.83 -1.1 321,772 - MPMX19_04877 0.83 +0.6 321,772 - MPMX19_04877 0.83 +0.5 321,978 + -0.8 321,978 + -1.5 321,978 + -0.8 321,978 + +0.2 321,978 + +0.0 321,978 + +0.1 321,978 + -1.3 321,978 + -0.0 321,979 - -0.1 321,979 - +0.6 321,979 - +0.4 321,979 - -1.2 321,979 - +1.1 321,979 - -0.8 321,979 - -1.8 321,979 - -1.6 321,979 - +0.4 321,979 - -0.5 321,979 - -1.2 321,979 - -1.6 322,070 + -1.6 322,070 + -0.1 322,070 + -0.6 322,070 + -1.0 322,071 - +0.4 322,270 - +0.6 322,386 + MPMX19_04878 0.17 -0.9 322,386 + MPMX19_04878 0.17 +0.7 322,386 + MPMX19_04878 0.17 -1.1 322,386 + MPMX19_04878 0.17 -1.1 322,386 + MPMX19_04878 0.17 -1.1 322,387 - MPMX19_04878 0.17 -1.1 322,387 - MPMX19_04878 0.17 -0.6 322,387 - MPMX19_04878 0.17 -1.5 322,387 - MPMX19_04878 0.17 -0.6 322,387 - MPMX19_04878 0.17 -0.2 322,387 - MPMX19_04878 0.17 +1.5 322,387 - MPMX19_04878 0.17 -0.5 322,387 - MPMX19_04878 0.17 +0.7 322,387 - MPMX19_04878 0.17 -0.9 322,387 - MPMX19_04878 0.17 -0.5 322,387 - MPMX19_04878 0.17 +0.8 322,398 + MPMX19_04878 0.18 +0.7 322,398 + MPMX19_04878 0.18 +0.8 322,399 - MPMX19_04878 0.18 -1.3 322,399 - MPMX19_04878 0.18 -0.2 322,399 - MPMX19_04878 0.18 -1.1 322,399 - MPMX19_04878 0.18 -0.2 322,629 + MPMX19_04878 0.40 -0.1 322,629 + MPMX19_04878 0.40 -0.5 322,629 + MPMX19_04878 0.40 -0.4 322,629 + MPMX19_04878 0.40 +0.3 322,875 + MPMX19_04878 0.64 -0.4 322,875 + MPMX19_04878 0.64 -1.6 322,875 + MPMX19_04878 0.64 -0.3 322,875 + MPMX19_04878 0.64 -0.9 322,875 + MPMX19_04878 0.64 -0.5 322,875 + MPMX19_04878 0.64 -0.2 322,876 - MPMX19_04878 0.64 -0.1 322,876 - MPMX19_04878 0.64 -0.5 322,876 - MPMX19_04878 0.64 -1.6 322,876 - MPMX19_04878 0.64 -0.7 322,876 - MPMX19_04878 0.64 +2.7 322,876 - MPMX19_04878 0.64 +0.1 322,876 - MPMX19_04878 0.64 -1.5 322,876 - MPMX19_04878 0.64 -0.4 323,097 + MPMX19_04878 0.85 +0.6 323,097 + MPMX19_04878 0.85 +1.1 323,097 + MPMX19_04878 0.85 +0.9 323,097 + MPMX19_04878 0.85 -0.4 323,097 + MPMX19_04878 0.85 -0.1 323,098 - MPMX19_04878 0.85 -1.8 323,268 + -0.5 323,269 - -0.2 323,438 + +0.1 323,438 + +1.5 323,439 - -0.5 323,439 - -0.0 323,439 - -0.8 323,439 - +0.2 323,550 - -0.9 323,606 + MPMX19_04879 0.47 -0.1 323,607 - MPMX19_04879 0.48 -0.5 323,708 + -0.8 323,708 + -2.1 323,708 + -0.5 323,708 + -0.3 323,709 - +0.4 323,709 - +0.1 323,709 - -0.9 323,709 - -0.1 323,709 - -0.8 323,709 - +0.1 323,709 - +0.2 323,768 + -1.1 323,768 + -0.8 323,768 + +0.2 323,768 + -1.1 323,768 + +0.3 323,768 + +0.2 323,768 + -1.1 323,768 + -0.2 323,768 + +1.0 323,768 + -0.5 323,768 + -0.5 323,769 - +0.8 323,769 - -1.8 323,769 - +0.8 323,769 - -0.5 323,769 - -1.5 324,186 + MPMX19_04880 0.47 -1.3 324,186 + MPMX19_04880 0.47 -2.3 324,186 + MPMX19_04880 0.47 -1.6 324,186 + MPMX19_04880 0.47 -1.8 324,186 + MPMX19_04880 0.47 -1.3 324,186 + MPMX19_04880 0.47 -1.3 324,186 + MPMX19_04880 0.47 +0.7 324,186 + MPMX19_04880 0.47 -1.8 324,186 + MPMX19_04880 0.47 -1.5 324,186 + MPMX19_04880 0.47 -1.1 324,186 + MPMX19_04880 0.47 -0.9 324,187 - MPMX19_04880 0.47 +0.2 324,187 - MPMX19_04880 0.47 +0.5 324,187 - MPMX19_04880 0.47 +0.7 324,187 - MPMX19_04880 0.47 +0.5 324,187 - MPMX19_04880 0.47 -1.1 324,187 - MPMX19_04880 0.47 -0.9 324,187 - MPMX19_04880 0.47 -1.9 324,187 - MPMX19_04880 0.47 -0.9 324,187 - MPMX19_04880 0.47 -0.5 324,187 - MPMX19_04880 0.47 -1.9 324,187 - MPMX19_04880 0.47 +0.8 324,187 - MPMX19_04880 0.47 -0.6
Or see this region's nucleotide sequence