Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04498

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04497 and MPMX19_04498 are separated by 42 nucleotidesMPMX19_04498 and MPMX19_04499 are separated by 85 nucleotides MPMX19_04497: MPMX19_04497 - hypothetical protein, at 865,340 to 867,106 _04497 MPMX19_04498: MPMX19_04498 - Denitrification regulatory protein NirQ, at 867,149 to 867,949 _04498 MPMX19_04499: MPMX19_04499 - Aliphatic amidase, at 868,035 to 869,075 _04499 Position (kb) 867 868Strain fitness (log2 ratio) -2 -1 0 1 2at 866.206 kb on - strand, within MPMX19_04497at 866.206 kb on - strand, within MPMX19_04497at 866.206 kb on - strand, within MPMX19_04497at 866.221 kb on - strand, within MPMX19_04497at 866.446 kb on - strand, within MPMX19_04497at 867.018 kb on + strandat 867.018 kb on + strandat 867.018 kb on + strandat 867.018 kb on + strandat 867.018 kb on + strandat 867.018 kb on + strandat 867.018 kb on + strandat 867.019 kb on - strandat 867.019 kb on - strandat 867.507 kb on + strand, within MPMX19_04498at 867.507 kb on + strand, within MPMX19_04498at 867.507 kb on + strand, within MPMX19_04498at 867.507 kb on + strand, within MPMX19_04498at 867.507 kb on + strand, within MPMX19_04498at 867.508 kb on - strand, within MPMX19_04498at 867.508 kb on - strand, within MPMX19_04498at 867.508 kb on - strand, within MPMX19_04498at 867.508 kb on - strand, within MPMX19_04498at 867.508 kb on - strand, within MPMX19_04498at 867.645 kb on + strand, within MPMX19_04498at 867.645 kb on + strand, within MPMX19_04498at 867.646 kb on - strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.799 kb on + strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.800 kb on - strand, within MPMX19_04498at 867.867 kb on + strand, within MPMX19_04498at 867.867 kb on + strand, within MPMX19_04498at 867.867 kb on + strand, within MPMX19_04498at 867.868 kb on - strand, within MPMX19_04498at 867.868 kb on - strand, within MPMX19_04498at 867.909 kb on + strandat 867.909 kb on + strandat 867.909 kb on + strandat 867.910 kb on - strandat 867.910 kb on - strandat 867.912 kb on + strandat 867.912 kb on + strandat 867.912 kb on + strandat 867.912 kb on + strandat 867.912 kb on + strandat 867.913 kb on - strandat 867.913 kb on - strandat 867.963 kb on + strandat 867.963 kb on + strandat 867.963 kb on + strandat 867.963 kb on + strandat 867.963 kb on + strandat 867.963 kb on + strandat 867.963 kb on + strandat 867.964 kb on - strandat 867.964 kb on - strandat 867.986 kb on + strandat 867.986 kb on + strandat 867.987 kb on - strandat 867.987 kb on - strandat 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.162 kb on + strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.163 kb on - strand, within MPMX19_04499at 868.171 kb on + strand, within MPMX19_04499at 868.171 kb on + strand, within MPMX19_04499at 868.225 kb on + strand, within MPMX19_04499at 868.226 kb on - strand, within MPMX19_04499at 868.226 kb on - strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.312 kb on + strand, within MPMX19_04499at 868.313 kb on - strand, within MPMX19_04499at 868.313 kb on - strand, within MPMX19_04499at 868.313 kb on - strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.390 kb on + strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.391 kb on - strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.396 kb on + strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.397 kb on - strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.435 kb on + strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.436 kb on - strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.495 kb on + strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.496 kb on - strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.501 kb on + strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.502 kb on - strand, within MPMX19_04499at 868.564 kb on + strand, within MPMX19_04499at 868.564 kb on + strand, within MPMX19_04499at 868.564 kb on + strand, within MPMX19_04499at 868.565 kb on - strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.729 kb on + strand, within MPMX19_04499at 868.730 kb on - strand, within MPMX19_04499at 868.730 kb on - strand, within MPMX19_04499at 868.730 kb on - strand, within MPMX19_04499at 868.858 kb on + strand, within MPMX19_04499at 868.859 kb on - strand, within MPMX19_04499at 868.876 kb on + strand, within MPMX19_04499at 868.876 kb on + strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499at 868.877 kb on - strand, within MPMX19_04499

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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866,206 - MPMX19_04497 0.49 +0.4
866,206 - MPMX19_04497 0.49 -0.9
866,206 - MPMX19_04497 0.49 +1.1
866,221 - MPMX19_04497 0.50 -0.5
866,446 - MPMX19_04497 0.63 +0.2
867,018 + -0.8
867,018 + +0.4
867,018 + -0.4
867,018 + +0.1
867,018 + +0.9
867,018 + -0.9
867,018 + +0.4
867,019 - -0.9
867,019 - +0.2
867,507 + MPMX19_04498 0.45 -0.3
867,507 + MPMX19_04498 0.45 -1.9
867,507 + MPMX19_04498 0.45 +1.2
867,507 + MPMX19_04498 0.45 +0.6
867,507 + MPMX19_04498 0.45 -2.1
867,508 - MPMX19_04498 0.45 -0.7
867,508 - MPMX19_04498 0.45 -1.6
867,508 - MPMX19_04498 0.45 -1.3
867,508 - MPMX19_04498 0.45 +0.9
867,508 - MPMX19_04498 0.45 -0.2
867,645 + MPMX19_04498 0.62 -0.4
867,645 + MPMX19_04498 0.62 +0.2
867,646 - MPMX19_04498 0.62 +0.1
867,799 + MPMX19_04498 0.81 -0.1
867,799 + MPMX19_04498 0.81 -0.7
867,799 + MPMX19_04498 0.81 -2.1
867,799 + MPMX19_04498 0.81 -0.2
867,799 + MPMX19_04498 0.81 -0.4
867,799 + MPMX19_04498 0.81 +0.1
867,799 + MPMX19_04498 0.81 -1.3
867,799 + MPMX19_04498 0.81 -0.0
867,799 + MPMX19_04498 0.81 -0.4
867,799 + MPMX19_04498 0.81 -0.7
867,799 + MPMX19_04498 0.81 -0.8
867,800 - MPMX19_04498 0.81 -0.8
867,800 - MPMX19_04498 0.81 -0.0
867,800 - MPMX19_04498 0.81 +1.0
867,800 - MPMX19_04498 0.81 +0.5
867,800 - MPMX19_04498 0.81 -0.6
867,800 - MPMX19_04498 0.81 -0.4
867,800 - MPMX19_04498 0.81 -0.9
867,800 - MPMX19_04498 0.81 -0.9
867,867 + MPMX19_04498 0.90 -0.2
867,867 + MPMX19_04498 0.90 -0.2
867,867 + MPMX19_04498 0.90 -1.2
867,868 - MPMX19_04498 0.90 +0.1
867,868 - MPMX19_04498 0.90 -0.9
867,909 + -0.2
867,909 + -0.7
867,909 + +0.1
867,910 - +0.1
867,910 - +0.1
867,912 + -1.2
867,912 + +0.6
867,912 + -1.3
867,912 + -0.7
867,912 + -0.2
867,913 - -0.4
867,913 - -1.8
867,963 + -0.2
867,963 + -1.5
867,963 + +0.2
867,963 + -1.9
867,963 + -0.5
867,963 + +0.2
867,963 + +0.5
867,964 - -1.1
867,964 - +0.1
867,986 + -0.6
867,986 + -0.1
867,987 - -0.7
867,987 - -1.9
868,162 + MPMX19_04499 0.12 -2.3
868,162 + MPMX19_04499 0.12 -0.4
868,162 + MPMX19_04499 0.12 +0.3
868,162 + MPMX19_04499 0.12 -1.5
868,162 + MPMX19_04499 0.12 +0.1
868,162 + MPMX19_04499 0.12 +0.1
868,162 + MPMX19_04499 0.12 -2.2
868,162 + MPMX19_04499 0.12 +1.1
868,162 + MPMX19_04499 0.12 +1.0
868,162 + MPMX19_04499 0.12 -0.3
868,162 + MPMX19_04499 0.12 +0.1
868,162 + MPMX19_04499 0.12 +0.5
868,162 + MPMX19_04499 0.12 +0.1
868,162 + MPMX19_04499 0.12 -0.4
868,162 + MPMX19_04499 0.12 -1.4
868,163 - MPMX19_04499 0.12 -2.4
868,163 - MPMX19_04499 0.12 +1.2
868,163 - MPMX19_04499 0.12 +0.3
868,163 - MPMX19_04499 0.12 +1.1
868,163 - MPMX19_04499 0.12 -0.0
868,163 - MPMX19_04499 0.12 -0.4
868,163 - MPMX19_04499 0.12 -0.6
868,163 - MPMX19_04499 0.12 -0.6
868,163 - MPMX19_04499 0.12 +2.6
868,163 - MPMX19_04499 0.12 +0.1
868,163 - MPMX19_04499 0.12 +0.8
868,163 - MPMX19_04499 0.12 -0.4
868,163 - MPMX19_04499 0.12 -0.7
868,163 - MPMX19_04499 0.12 -0.8
868,163 - MPMX19_04499 0.12 -0.2
868,163 - MPMX19_04499 0.12 +0.9
868,171 + MPMX19_04499 0.13 +2.2
868,171 + MPMX19_04499 0.13 -0.3
868,225 + MPMX19_04499 0.18 -0.4
868,226 - MPMX19_04499 0.18 -0.1
868,226 - MPMX19_04499 0.18 +1.2
868,312 + MPMX19_04499 0.27 +0.9
868,312 + MPMX19_04499 0.27 -1.7
868,312 + MPMX19_04499 0.27 -0.2
868,312 + MPMX19_04499 0.27 -0.4
868,313 - MPMX19_04499 0.27 -0.5
868,313 - MPMX19_04499 0.27 +1.1
868,313 - MPMX19_04499 0.27 -0.9
868,390 + MPMX19_04499 0.34 -1.9
868,390 + MPMX19_04499 0.34 +0.1
868,390 + MPMX19_04499 0.34 +0.1
868,390 + MPMX19_04499 0.34 -0.6
868,391 - MPMX19_04499 0.34 -0.9
868,391 - MPMX19_04499 0.34 +1.1
868,391 - MPMX19_04499 0.34 +0.6
868,391 - MPMX19_04499 0.34 -1.0
868,391 - MPMX19_04499 0.34 -0.6
868,396 + MPMX19_04499 0.35 +0.8
868,396 + MPMX19_04499 0.35 +0.1
868,396 + MPMX19_04499 0.35 +0.4
868,396 + MPMX19_04499 0.35 -0.4
868,396 + MPMX19_04499 0.35 +1.1
868,397 - MPMX19_04499 0.35 -1.4
868,397 - MPMX19_04499 0.35 -0.4
868,397 - MPMX19_04499 0.35 -1.2
868,397 - MPMX19_04499 0.35 -0.1
868,397 - MPMX19_04499 0.35 -1.4
868,397 - MPMX19_04499 0.35 +0.1
868,397 - MPMX19_04499 0.35 -0.7
868,435 + MPMX19_04499 0.38 +0.9
868,435 + MPMX19_04499 0.38 -0.0
868,435 + MPMX19_04499 0.38 +0.6
868,435 + MPMX19_04499 0.38 -0.4
868,435 + MPMX19_04499 0.38 -0.1
868,436 - MPMX19_04499 0.39 +1.1
868,436 - MPMX19_04499 0.39 -0.0
868,436 - MPMX19_04499 0.39 +1.3
868,436 - MPMX19_04499 0.39 -0.9
868,436 - MPMX19_04499 0.39 -1.2
868,436 - MPMX19_04499 0.39 +0.3
868,436 - MPMX19_04499 0.39 +0.3
868,436 - MPMX19_04499 0.39 -1.8
868,436 - MPMX19_04499 0.39 -2.2
868,436 - MPMX19_04499 0.39 -0.9
868,436 - MPMX19_04499 0.39 +1.6
868,495 + MPMX19_04499 0.44 -1.4
868,495 + MPMX19_04499 0.44 +1.2
868,495 + MPMX19_04499 0.44 -0.5
868,495 + MPMX19_04499 0.44 -1.9
868,495 + MPMX19_04499 0.44 +0.6
868,495 + MPMX19_04499 0.44 -0.4
868,495 + MPMX19_04499 0.44 +1.4
868,495 + MPMX19_04499 0.44 +0.0
868,495 + MPMX19_04499 0.44 -1.2
868,496 - MPMX19_04499 0.44 +1.1
868,496 - MPMX19_04499 0.44 -0.5
868,496 - MPMX19_04499 0.44 -0.0
868,496 - MPMX19_04499 0.44 -0.1
868,496 - MPMX19_04499 0.44 +1.0
868,501 + MPMX19_04499 0.45 -0.2
868,501 + MPMX19_04499 0.45 -0.5
868,501 + MPMX19_04499 0.45 -0.7
868,501 + MPMX19_04499 0.45 +0.6
868,501 + MPMX19_04499 0.45 -0.6
868,501 + MPMX19_04499 0.45 -1.4
868,501 + MPMX19_04499 0.45 +2.0
868,501 + MPMX19_04499 0.45 +0.3
868,501 + MPMX19_04499 0.45 +0.3
868,501 + MPMX19_04499 0.45 -1.9
868,501 + MPMX19_04499 0.45 -0.7
868,502 - MPMX19_04499 0.45 -1.2
868,502 - MPMX19_04499 0.45 -0.2
868,502 - MPMX19_04499 0.45 +0.6
868,502 - MPMX19_04499 0.45 +0.2
868,502 - MPMX19_04499 0.45 -0.4
868,502 - MPMX19_04499 0.45 -0.2
868,502 - MPMX19_04499 0.45 -0.5
868,502 - MPMX19_04499 0.45 +0.1
868,502 - MPMX19_04499 0.45 -0.7
868,502 - MPMX19_04499 0.45 -0.1
868,564 + MPMX19_04499 0.51 -1.4
868,564 + MPMX19_04499 0.51 -0.1
868,564 + MPMX19_04499 0.51 -0.2
868,565 - MPMX19_04499 0.51 -0.7
868,729 + MPMX19_04499 0.67 -0.4
868,729 + MPMX19_04499 0.67 +0.1
868,729 + MPMX19_04499 0.67 +0.2
868,729 + MPMX19_04499 0.67 -0.7
868,729 + MPMX19_04499 0.67 -0.1
868,729 + MPMX19_04499 0.67 -0.8
868,729 + MPMX19_04499 0.67 -2.7
868,729 + MPMX19_04499 0.67 -0.9
868,730 - MPMX19_04499 0.67 -0.2
868,730 - MPMX19_04499 0.67 +0.6
868,730 - MPMX19_04499 0.67 +0.4
868,858 + MPMX19_04499 0.79 -0.6
868,859 - MPMX19_04499 0.79 -1.7
868,876 + MPMX19_04499 0.81 -1.4
868,876 + MPMX19_04499 0.81 +0.3
868,877 - MPMX19_04499 0.81 -0.2
868,877 - MPMX19_04499 0.81 -1.5
868,877 - MPMX19_04499 0.81 -0.1
868,877 - MPMX19_04499 0.81 +0.3

Or see this region's nucleotide sequence