Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04010 and MPMX19_04011 are separated by 91 nucleotides MPMX19_04011 and MPMX19_04012 are separated by 33 nucleotides MPMX19_04012 and MPMX19_04013 are separated by 84 nucleotides
MPMX19_04010: MPMX19_04010 - Isoaspartyl peptidase, at 306,430 to 307,401
_04010
MPMX19_04011: MPMX19_04011 - Zinc-type alcohol dehydrogenase-like protein, at 307,493 to 308,443
_04011
MPMX19_04012: MPMX19_04012 - hypothetical protein, at 308,477 to 308,902
_04012
MPMX19_04013: MPMX19_04013 - hypothetical protein, at 308,987 to 309,466
_04013
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 306.871 kb on + strand, within MPMX19_04010 at 306.871 kb on + strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 307.330 kb on + strand at 307.331 kb on - strand at 307.331 kb on - strand at 307.679 kb on + strand, within MPMX19_04011 at 307.679 kb on + strand, within MPMX19_04011 at 307.679 kb on + strand, within MPMX19_04011 at 307.680 kb on - strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.751 kb on + strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.752 kb on - strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.787 kb on + strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.788 kb on - strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.796 kb on + strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 307.797 kb on - strand, within MPMX19_04011 at 308.075 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.265 kb on - strand, within MPMX19_04011 at 308.416 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.494 kb on + strand at 308.897 kb on + strand at 308.897 kb on + strand at 308.898 kb on - strand at 308.898 kb on - strand at 308.909 kb on + strand at 308.909 kb on + strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.260 kb on + strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 306,871 + MPMX19_04010 0.45 -1.9 306,871 + MPMX19_04010 0.45 -0.4 306,872 - MPMX19_04010 0.45 -0.5 306,872 - MPMX19_04010 0.45 -0.5 306,872 - MPMX19_04010 0.45 -2.2 306,872 - MPMX19_04010 0.45 -0.2 307,330 + -0.2 307,331 - -0.1 307,331 - +0.8 307,679 + MPMX19_04011 0.20 -1.4 307,679 + MPMX19_04011 0.20 -0.9 307,679 + MPMX19_04011 0.20 -1.0 307,680 - MPMX19_04011 0.20 +0.4 307,751 + MPMX19_04011 0.27 -1.7 307,751 + MPMX19_04011 0.27 +0.0 307,751 + MPMX19_04011 0.27 +0.8 307,751 + MPMX19_04011 0.27 +2.5 307,751 + MPMX19_04011 0.27 -1.1 307,751 + MPMX19_04011 0.27 +0.9 307,751 + MPMX19_04011 0.27 -0.3 307,751 + MPMX19_04011 0.27 -1.1 307,751 + MPMX19_04011 0.27 -0.6 307,751 + MPMX19_04011 0.27 -0.4 307,751 + MPMX19_04011 0.27 -0.1 307,752 - MPMX19_04011 0.27 -2.9 307,752 - MPMX19_04011 0.27 -0.4 307,752 - MPMX19_04011 0.27 -0.2 307,752 - MPMX19_04011 0.27 -0.9 307,752 - MPMX19_04011 0.27 +0.3 307,752 - MPMX19_04011 0.27 +0.0 307,752 - MPMX19_04011 0.27 +0.3 307,752 - MPMX19_04011 0.27 +0.6 307,752 - MPMX19_04011 0.27 +1.0 307,752 - MPMX19_04011 0.27 +0.4 307,752 - MPMX19_04011 0.27 -0.5 307,752 - MPMX19_04011 0.27 -0.1 307,752 - MPMX19_04011 0.27 -0.7 307,752 - MPMX19_04011 0.27 -1.0 307,752 - MPMX19_04011 0.27 -0.1 307,787 + MPMX19_04011 0.31 -0.4 307,787 + MPMX19_04011 0.31 -1.4 307,787 + MPMX19_04011 0.31 -1.3 307,787 + MPMX19_04011 0.31 -0.3 307,787 + MPMX19_04011 0.31 -0.9 307,788 - MPMX19_04011 0.31 -0.9 307,788 - MPMX19_04011 0.31 +0.4 307,788 - MPMX19_04011 0.31 -0.3 307,788 - MPMX19_04011 0.31 -1.1 307,788 - MPMX19_04011 0.31 +0.4 307,796 + MPMX19_04011 0.32 -1.0 307,796 + MPMX19_04011 0.32 -0.3 307,796 + MPMX19_04011 0.32 -0.6 307,796 + MPMX19_04011 0.32 +1.6 307,796 + MPMX19_04011 0.32 -2.1 307,796 + MPMX19_04011 0.32 +0.1 307,796 + MPMX19_04011 0.32 -0.4 307,797 - MPMX19_04011 0.32 -0.1 307,797 - MPMX19_04011 0.32 -0.7 307,797 - MPMX19_04011 0.32 -1.1 307,797 - MPMX19_04011 0.32 -0.6 307,797 - MPMX19_04011 0.32 +0.3 307,797 - MPMX19_04011 0.32 +0.3 307,797 - MPMX19_04011 0.32 -0.1 307,797 - MPMX19_04011 0.32 +0.1 307,797 - MPMX19_04011 0.32 -1.3 307,797 - MPMX19_04011 0.32 +0.6 308,075 + MPMX19_04011 0.61 +0.4 308,243 + MPMX19_04011 0.79 -1.7 308,243 + MPMX19_04011 0.79 -0.2 308,243 + MPMX19_04011 0.79 -0.7 308,243 + MPMX19_04011 0.79 +0.2 308,243 + MPMX19_04011 0.79 -0.3 308,243 + MPMX19_04011 0.79 -1.0 308,243 + MPMX19_04011 0.79 -3.0 308,243 + MPMX19_04011 0.79 -0.5 308,243 + MPMX19_04011 0.79 -1.9 308,243 + MPMX19_04011 0.79 +0.6 308,243 + MPMX19_04011 0.79 -1.2 308,243 + MPMX19_04011 0.79 -1.2 308,243 + MPMX19_04011 0.79 -1.1 308,243 + MPMX19_04011 0.79 -0.4 308,244 - MPMX19_04011 0.79 +2.4 308,244 - MPMX19_04011 0.79 -1.0 308,244 - MPMX19_04011 0.79 -0.4 308,244 - MPMX19_04011 0.79 -0.7 308,244 - MPMX19_04011 0.79 -0.3 308,244 - MPMX19_04011 0.79 -1.6 308,244 - MPMX19_04011 0.79 +0.3 308,244 - MPMX19_04011 0.79 -0.9 308,244 - MPMX19_04011 0.79 -2.3 308,244 - MPMX19_04011 0.79 +0.7 308,244 - MPMX19_04011 0.79 -0.9 308,244 - MPMX19_04011 0.79 -1.8 308,244 - MPMX19_04011 0.79 +0.6 308,244 - MPMX19_04011 0.79 +0.4 308,244 - MPMX19_04011 0.79 +1.3 308,244 - MPMX19_04011 0.79 -1.0 308,244 - MPMX19_04011 0.79 -0.2 308,264 + MPMX19_04011 0.81 +0.1 308,264 + MPMX19_04011 0.81 -2.7 308,265 - MPMX19_04011 0.81 -1.1 308,416 + -2.0 308,483 + -0.1 308,483 + -0.2 308,483 + -1.9 308,483 + +1.3 308,483 + +0.9 308,483 + -0.3 308,483 + -0.6 308,483 + +0.3 308,483 + +0.3 308,483 + -1.4 308,483 + -0.5 308,483 + -0.5 308,483 + -1.4 308,483 + +0.3 308,483 + -0.1 308,483 + +0.3 308,483 + +0.4 308,483 + -0.6 308,483 + -0.7 308,483 + +1.0 308,483 + -1.3 308,483 + +0.3 308,483 + -0.8 308,483 + +0.3 308,483 + -0.9 308,483 + -1.2 308,483 + -0.7 308,484 - +0.4 308,484 - -0.9 308,484 - +0.4 308,484 - -0.6 308,484 - -1.0 308,484 - -0.8 308,484 - -0.5 308,484 - -1.1 308,484 - -1.1 308,484 - -0.4 308,484 - +1.4 308,484 - +0.4 308,484 - -0.4 308,484 - -1.6 308,484 - -0.9 308,484 - -0.6 308,484 - -0.7 308,484 - +1.2 308,484 - -1.5 308,485 + +0.4 308,485 + +1.4 308,485 + +0.9 308,485 + +0.3 308,485 + +0.4 308,485 + +0.2 308,485 + -0.4 308,485 + -1.0 308,485 + -0.1 308,485 + -0.3 308,485 + +0.4 308,485 + -0.3 308,485 + -0.5 308,485 + -1.2 308,485 + +1.3 308,486 - -0.3 308,486 - -0.7 308,486 - +0.6 308,486 - -0.3 308,486 - +0.6 308,486 - +0.0 308,486 - +0.7 308,486 - +0.2 308,486 - -0.6 308,486 - +0.1 308,486 - -0.4 308,486 - +0.3 308,486 - +0.7 308,486 - -0.5 308,486 - +0.7 308,486 - +0.3 308,486 - +0.0 308,494 + +0.0 308,897 + -0.2 308,897 + -1.5 308,898 - -0.2 308,898 - +0.3 308,909 + -1.2 308,909 + -2.7 308,910 - -1.0 308,910 - -0.1 308,910 - -0.3 308,910 - +1.6 308,910 - +0.2 308,910 - -1.0 308,910 - -0.1 308,910 - +0.0 308,910 - -0.4 308,910 - -2.4 308,910 - -0.7 308,910 - -0.3 308,910 - -1.3 309,053 + MPMX19_04013 0.14 -0.7 309,053 + MPMX19_04013 0.14 -0.2 309,053 + MPMX19_04013 0.14 -0.3 309,053 + MPMX19_04013 0.14 -0.2 309,054 - MPMX19_04013 0.14 -0.2 309,054 - MPMX19_04013 0.14 +0.8 309,054 - MPMX19_04013 0.14 +0.1 309,260 + MPMX19_04013 0.57 -1.5 309,261 - MPMX19_04013 0.57 +0.4 309,261 - MPMX19_04013 0.57 -0.6
Or see this region's nucleotide sequence