Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03825 and MPMX19_03826 are separated by 26 nucleotides MPMX19_03826 and MPMX19_03827 are separated by 40 nucleotides MPMX19_03827 and MPMX19_03828 are separated by 367 nucleotides
MPMX19_03825: MPMX19_03825 - IS5 family transposase IS4811, at 63,130 to 64,074
_03825
MPMX19_03826: MPMX19_03826 - putative methyltransferase, at 64,101 to 64,862
_03826
MPMX19_03827: MPMX19_03827 - hypothetical protein, at 64,903 to 66,408
_03827
MPMX19_03828: MPMX19_03828 - Aliphatic amidase expression-regulating protein, at 66,776 to 68,086
_03828
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 64.114 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.834 kb on + strand at 64.862 kb on + strand at 64.862 kb on + strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.183 kb on + strand, within MPMX19_03827 at 65.184 kb on - strand, within MPMX19_03827 at 65.184 kb on - strand, within MPMX19_03827 at 65.496 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.535 kb on - strand, within MPMX19_03827 at 65.535 kb on - strand, within MPMX19_03827 at 66.004 kb on + strand, within MPMX19_03827 at 66.005 kb on - strand, within MPMX19_03827 at 66.564 kb on - strand at 66.564 kb on - strand at 66.564 kb on - strand at 66.605 kb on + strand at 66.606 kb on - strand at 66.627 kb on + strand at 66.627 kb on + strand at 66.627 kb on + strand at 66.628 kb on - strand at 66.628 kb on - strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.688 kb on - strand at 66.708 kb on + strand at 66.709 kb on - strand at 66.709 kb on - strand at 66.709 kb on - strand at 67.172 kb on + strand, within MPMX19_03828 at 67.172 kb on + strand, within MPMX19_03828 at 67.172 kb on + strand, within MPMX19_03828 at 67.172 kb on + strand, within MPMX19_03828 at 67.184 kb on + strand, within MPMX19_03828 at 67.184 kb on + strand, within MPMX19_03828 at 67.184 kb on + strand, within MPMX19_03828 at 67.185 kb on - strand, within MPMX19_03828 at 67.185 kb on - strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.218 kb on - strand, within MPMX19_03828 at 67.218 kb on - strand, within MPMX19_03828 at 67.218 kb on - strand, within MPMX19_03828 at 67.262 kb on + strand, within MPMX19_03828 at 67.262 kb on + strand, within MPMX19_03828 at 67.263 kb on - strand, within MPMX19_03828 at 67.263 kb on - strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.320 kb on - strand, within MPMX19_03828 at 67.320 kb on - strand, within MPMX19_03828 at 67.320 kb on - strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.353 kb on - strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 64,114 + -0.7 64,813 + -1.0 64,813 + +0.4 64,813 + -1.5 64,813 + -0.2 64,813 + +1.0 64,813 + +0.5 64,813 + -0.4 64,814 - +0.6 64,814 - +0.8 64,814 - -0.7 64,814 - -1.3 64,814 - -0.7 64,814 - -0.8 64,814 - +1.9 64,814 - -2.0 64,814 - -0.3 64,814 - +0.5 64,814 - -1.7 64,814 - -1.2 64,834 + +0.5 64,862 + -0.7 64,862 + +0.6 64,863 - -0.1 64,863 - +1.2 64,863 - -0.3 64,904 + -0.4 64,904 + -1.0 64,904 + -0.1 64,904 + +0.9 64,904 + +0.7 64,904 + +0.8 64,904 + -0.6 64,904 + -0.2 64,904 + -0.4 64,904 + +0.2 64,904 + -0.7 64,904 + -1.8 64,904 + -0.5 64,904 + -0.1 64,904 + -1.5 64,904 + +0.3 64,904 + -0.6 64,904 + -1.5 64,904 + -0.7 64,904 + +0.1 64,904 + +0.3 64,904 + -1.4 64,904 + +0.6 64,904 + +0.4 64,904 + +0.3 64,904 + -1.0 64,904 + -1.7 64,904 + -1.4 64,904 + +1.0 64,904 + +0.0 64,904 + +1.1 64,904 + +0.0 64,904 + +1.0 64,904 + +0.5 64,905 - +0.5 64,905 - -0.4 64,905 - +1.3 64,905 - -1.4 64,905 - +1.9 64,905 - -1.0 64,905 - -0.7 64,905 - -1.8 64,905 - +0.3 64,905 - +0.4 64,905 - -1.8 64,905 - -0.7 64,905 - +0.2 64,905 - +0.5 64,905 - -0.9 64,905 - -0.2 64,905 - +0.0 64,905 - -0.8 64,905 - +1.2 64,905 - +1.4 64,905 - -0.7 64,905 - -0.2 64,905 - -3.1 64,905 - -0.4 64,905 - +0.3 64,905 - +0.2 64,905 - +0.2 65,129 + MPMX19_03827 0.15 +0.1 65,129 + MPMX19_03827 0.15 -0.5 65,129 + MPMX19_03827 0.15 +0.0 65,129 + MPMX19_03827 0.15 -0.2 65,129 + MPMX19_03827 0.15 -0.7 65,129 + MPMX19_03827 0.15 -0.2 65,129 + MPMX19_03827 0.15 -2.2 65,129 + MPMX19_03827 0.15 -0.4 65,129 + MPMX19_03827 0.15 -0.5 65,129 + MPMX19_03827 0.15 -2.0 65,129 + MPMX19_03827 0.15 -1.5 65,130 - MPMX19_03827 0.15 -0.4 65,130 - MPMX19_03827 0.15 -1.3 65,130 - MPMX19_03827 0.15 -0.8 65,130 - MPMX19_03827 0.15 +0.4 65,130 - MPMX19_03827 0.15 -1.3 65,130 - MPMX19_03827 0.15 -1.1 65,130 - MPMX19_03827 0.15 -0.7 65,130 - MPMX19_03827 0.15 -1.8 65,130 - MPMX19_03827 0.15 +0.7 65,130 - MPMX19_03827 0.15 -0.5 65,130 - MPMX19_03827 0.15 -0.4 65,130 - MPMX19_03827 0.15 -1.0 65,130 - MPMX19_03827 0.15 -1.4 65,130 - MPMX19_03827 0.15 +0.2 65,130 - MPMX19_03827 0.15 +0.4 65,130 - MPMX19_03827 0.15 -1.0 65,130 - MPMX19_03827 0.15 +0.2 65,183 + MPMX19_03827 0.19 -0.7 65,184 - MPMX19_03827 0.19 -2.1 65,184 - MPMX19_03827 0.19 +1.4 65,496 + MPMX19_03827 0.39 +0.3 65,534 + MPMX19_03827 0.42 +0.7 65,534 + MPMX19_03827 0.42 -0.6 65,534 + MPMX19_03827 0.42 +0.1 65,535 - MPMX19_03827 0.42 -1.2 65,535 - MPMX19_03827 0.42 -2.8 66,004 + MPMX19_03827 0.73 -0.2 66,005 - MPMX19_03827 0.73 +0.8 66,564 - -0.6 66,564 - -0.7 66,564 - -0.5 66,605 + -0.1 66,606 - -1.3 66,627 + -0.2 66,627 + +0.0 66,627 + -1.5 66,628 - -1.8 66,628 - -0.4 66,667 + -0.6 66,667 + +0.4 66,667 + -1.2 66,667 + -0.7 66,667 + +0.0 66,667 + -0.2 66,667 + +0.2 66,667 + -1.0 66,667 + +1.0 66,667 + +0.5 66,667 + +0.4 66,667 + -2.5 66,667 + -0.8 66,667 + +0.2 66,668 - -0.8 66,668 - +0.3 66,668 - +1.8 66,668 - -0.2 66,668 - +0.3 66,668 - +0.0 66,668 - -0.4 66,668 - -3.1 66,668 - +0.3 66,668 - +1.4 66,668 - +0.2 66,668 - -2.1 66,668 - -1.9 66,668 - +1.0 66,668 - -1.2 66,683 + -0.2 66,683 + +0.8 66,683 + -0.2 66,683 + -0.3 66,683 + -1.3 66,683 + +0.0 66,683 + -0.5 66,683 + -1.1 66,683 + +0.9 66,683 + -1.7 66,683 + -0.7 66,683 + +0.2 66,683 + +1.0 66,683 + -2.2 66,683 + -0.3 66,684 - +0.3 66,684 - -2.1 66,684 - -0.5 66,684 - -0.8 66,684 - +0.0 66,684 - -1.7 66,684 - -1.2 66,684 - -0.6 66,684 - -0.2 66,684 - -1.7 66,684 - -1.8 66,684 - +0.0 66,684 - -0.4 66,684 - +0.3 66,684 - -0.6 66,684 - -0.8 66,684 - -1.2 66,684 - -1.2 66,684 - -1.9 66,687 + -0.3 66,687 + -1.2 66,687 + +1.6 66,687 + +0.2 66,687 + -0.8 66,688 - -0.1 66,708 + -0.8 66,709 - -1.0 66,709 - -0.4 66,709 - -0.5 67,172 + MPMX19_03828 0.30 -0.2 67,172 + MPMX19_03828 0.30 +0.6 67,172 + MPMX19_03828 0.30 +0.2 67,172 + MPMX19_03828 0.30 -1.2 67,184 + MPMX19_03828 0.31 +0.6 67,184 + MPMX19_03828 0.31 -0.9 67,184 + MPMX19_03828 0.31 +1.6 67,185 - MPMX19_03828 0.31 -0.2 67,185 - MPMX19_03828 0.31 -1.6 67,217 + MPMX19_03828 0.34 +0.0 67,217 + MPMX19_03828 0.34 -0.9 67,217 + MPMX19_03828 0.34 +0.0 67,217 + MPMX19_03828 0.34 +0.3 67,217 + MPMX19_03828 0.34 -1.0 67,218 - MPMX19_03828 0.34 -0.1 67,218 - MPMX19_03828 0.34 +1.1 67,218 - MPMX19_03828 0.34 +0.2 67,262 + MPMX19_03828 0.37 +0.3 67,262 + MPMX19_03828 0.37 +0.6 67,263 - MPMX19_03828 0.37 -0.7 67,263 - MPMX19_03828 0.37 +0.8 67,313 + MPMX19_03828 0.41 -0.2 67,313 + MPMX19_03828 0.41 +1.2 67,313 + MPMX19_03828 0.41 +1.1 67,313 + MPMX19_03828 0.41 +0.6 67,313 + MPMX19_03828 0.41 -0.6 67,313 + MPMX19_03828 0.41 -0.3 67,313 + MPMX19_03828 0.41 +0.1 67,313 + MPMX19_03828 0.41 -0.0 67,313 + MPMX19_03828 0.41 -1.7 67,313 + MPMX19_03828 0.41 +0.6 67,313 + MPMX19_03828 0.41 -0.0 67,313 + MPMX19_03828 0.41 -1.7 67,314 - MPMX19_03828 0.41 +1.3 67,314 - MPMX19_03828 0.41 +0.7 67,314 - MPMX19_03828 0.41 -0.3 67,314 - MPMX19_03828 0.41 -1.0 67,314 - MPMX19_03828 0.41 +0.2 67,314 - MPMX19_03828 0.41 -0.3 67,314 - MPMX19_03828 0.41 -0.0 67,314 - MPMX19_03828 0.41 -1.0 67,314 - MPMX19_03828 0.41 -0.2 67,314 - MPMX19_03828 0.41 -0.3 67,314 - MPMX19_03828 0.41 -1.1 67,314 - MPMX19_03828 0.41 -1.4 67,319 + MPMX19_03828 0.41 -0.7 67,319 + MPMX19_03828 0.41 +0.1 67,319 + MPMX19_03828 0.41 +1.0 67,319 + MPMX19_03828 0.41 -1.4 67,319 + MPMX19_03828 0.41 -0.4 67,320 - MPMX19_03828 0.41 -0.6 67,320 - MPMX19_03828 0.41 -0.5 67,320 - MPMX19_03828 0.41 -0.2 67,352 + MPMX19_03828 0.44 +0.0 67,352 + MPMX19_03828 0.44 +0.6 67,352 + MPMX19_03828 0.44 +1.4 67,352 + MPMX19_03828 0.44 -0.4 67,352 + MPMX19_03828 0.44 -1.5 67,352 + MPMX19_03828 0.44 +1.0 67,353 - MPMX19_03828 0.44 +0.7 67,397 + MPMX19_03828 0.47 -1.0 67,397 + MPMX19_03828 0.47 -0.5 67,397 + MPMX19_03828 0.47 -1.7 67,397 + MPMX19_03828 0.47 +0.0 67,397 + MPMX19_03828 0.47 +0.3 67,397 + MPMX19_03828 0.47 -1.5 67,397 + MPMX19_03828 0.47 -0.4 67,397 + MPMX19_03828 0.47 -1.4 67,397 + MPMX19_03828 0.47 +0.3 67,397 + MPMX19_03828 0.47 -1.7 67,397 + MPMX19_03828 0.47 -1.4 67,397 + MPMX19_03828 0.47 -1.8 67,398 - MPMX19_03828 0.47 +0.0 67,398 - MPMX19_03828 0.47 -1.3 67,398 - MPMX19_03828 0.47 -1.4 67,398 - MPMX19_03828 0.47 -0.3 67,398 - MPMX19_03828 0.47 -0.7 67,398 - MPMX19_03828 0.47 -0.4
Or see this region's nucleotide sequence