Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03776

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03774 and MPMX19_03775 are separated by 2 nucleotidesMPMX19_03775 and MPMX19_03776 overlap by 4 nucleotidesMPMX19_03776 and MPMX19_03777 overlap by 4 nucleotidesMPMX19_03777 and MPMX19_03778 overlap by 4 nucleotidesMPMX19_03778 and MPMX19_03779 overlap by 1 nucleotidesMPMX19_03779 and MPMX19_03780 overlap by 1 nucleotides MPMX19_03774: MPMX19_03774 - hypothetical protein, at 18,781 to 19,557 _03774 MPMX19_03775: MPMX19_03775 - hypothetical protein, at 19,560 to 20,135 _03775 MPMX19_03776: MPMX19_03776 - hypothetical protein, at 20,132 to 20,497 _03776 MPMX19_03777: MPMX19_03777 - hypothetical protein, at 20,494 to 20,754 _03777 MPMX19_03778: MPMX19_03778 - hypothetical protein, at 20,751 to 21,245 _03778 MPMX19_03779: MPMX19_03779 - hypothetical protein, at 21,245 to 21,490 _03779 MPMX19_03780: MPMX19_03780 - hypothetical protein, at 21,490 to 22,416 _03780 Position (kb) 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 19.292 kb on - strand, within MPMX19_03774at 19.292 kb on - strand, within MPMX19_03774at 19.292 kb on - strand, within MPMX19_03774at 19.292 kb on - strand, within MPMX19_03774at 19.292 kb on - strand, within MPMX19_03774at 19.292 kb on - strand, within MPMX19_03774at 19.292 kb on - strand, within MPMX19_03774at 19.572 kb on - strandat 19.578 kb on - strandat 19.578 kb on - strandat 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.679 kb on - strand, within MPMX19_03775at 19.741 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.951 kb on - strand, within MPMX19_03775at 19.978 kb on - strand, within MPMX19_03775at 19.978 kb on - strand, within MPMX19_03775at 20.020 kb on - strand, within MPMX19_03775at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.256 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.295 kb on - strand, within MPMX19_03776at 20.764 kb on - strandat 20.764 kb on - strandat 20.764 kb on - strandat 20.764 kb on - strandat 20.764 kb on - strandat 20.806 kb on - strand, within MPMX19_03778at 21.121 kb on - strand, within MPMX19_03778

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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19,292 - MPMX19_03774 0.66 -1.0
19,292 - MPMX19_03774 0.66 -1.2
19,292 - MPMX19_03774 0.66 +0.8
19,292 - MPMX19_03774 0.66 -0.7
19,292 - MPMX19_03774 0.66 +0.6
19,292 - MPMX19_03774 0.66 +0.0
19,292 - MPMX19_03774 0.66 -1.7
19,572 - +1.0
19,578 - -0.7
19,578 - +0.8
19,679 - MPMX19_03775 0.21 -1.2
19,679 - MPMX19_03775 0.21 +0.5
19,679 - MPMX19_03775 0.21 -1.5
19,679 - MPMX19_03775 0.21 -0.8
19,679 - MPMX19_03775 0.21 +0.6
19,679 - MPMX19_03775 0.21 +0.0
19,679 - MPMX19_03775 0.21 -0.4
19,679 - MPMX19_03775 0.21 -0.4
19,679 - MPMX19_03775 0.21 -2.1
19,679 - MPMX19_03775 0.21 +1.9
19,679 - MPMX19_03775 0.21 -0.2
19,679 - MPMX19_03775 0.21 +0.1
19,679 - MPMX19_03775 0.21 +0.0
19,679 - MPMX19_03775 0.21 -0.4
19,679 - MPMX19_03775 0.21 -0.3
19,679 - MPMX19_03775 0.21 -0.4
19,679 - MPMX19_03775 0.21 -0.8
19,679 - MPMX19_03775 0.21 +0.0
19,741 - MPMX19_03775 0.31 +0.3
19,951 - MPMX19_03775 0.68 +0.0
19,951 - MPMX19_03775 0.68 +0.0
19,951 - MPMX19_03775 0.68 -0.3
19,951 - MPMX19_03775 0.68 -0.4
19,951 - MPMX19_03775 0.68 +1.4
19,951 - MPMX19_03775 0.68 -2.3
19,951 - MPMX19_03775 0.68 -0.2
19,951 - MPMX19_03775 0.68 +0.3
19,978 - MPMX19_03775 0.73 -1.6
19,978 - MPMX19_03775 0.73 -1.0
20,020 - MPMX19_03775 0.80 -0.2
20,256 - MPMX19_03776 0.34 -0.4
20,256 - MPMX19_03776 0.34 -1.6
20,256 - MPMX19_03776 0.34 +0.9
20,256 - MPMX19_03776 0.34 -0.5
20,256 - MPMX19_03776 0.34 +0.2
20,256 - MPMX19_03776 0.34 -0.4
20,256 - MPMX19_03776 0.34 +0.3
20,256 - MPMX19_03776 0.34 -1.5
20,256 - MPMX19_03776 0.34 -0.2
20,256 - MPMX19_03776 0.34 -0.7
20,256 - MPMX19_03776 0.34 +0.4
20,256 - MPMX19_03776 0.34 +1.2
20,295 - MPMX19_03776 0.45 +0.6
20,295 - MPMX19_03776 0.45 +1.2
20,295 - MPMX19_03776 0.45 -0.7
20,295 - MPMX19_03776 0.45 +0.3
20,295 - MPMX19_03776 0.45 -0.7
20,764 - +0.0
20,764 - +0.5
20,764 - -0.7
20,764 - -2.5
20,764 - +0.9
20,806 - MPMX19_03778 0.11 +1.9
21,121 - MPMX19_03778 0.75 +0.4

Or see this region's nucleotide sequence