Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03574 and MPMX19_03575 are separated by 12 nucleotides MPMX19_03575 and MPMX19_03576 are separated by 153 nucleotides MPMX19_03576 and MPMX19_03577 are separated by 63 nucleotides
MPMX19_03574: MPMX19_03574 - Aurachin B dehydrogenase, at 995,399 to 996,286
_03574
MPMX19_03575: MPMX19_03575 - HTH-type transcriptional regulator NimR, at 996,299 to 997,075
_03575
MPMX19_03576: MPMX19_03576 - Fosmidomycin resistance protein, at 997,229 to 998,425
_03576
MPMX19_03577: MPMX19_03577 - Pyridoxine 4-dehydrogenase, at 998,489 to 999,379
_03577
Position (kb) 997
998
999 Strain fitness (log2 ratio) -2
-1
0
1
2 at 996.318 kb on + strand at 996.381 kb on + strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.663 kb on + strand, within MPMX19_03575 at 996.708 kb on + strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 997.005 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.139 kb on + strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.237 kb on + strand at 997.237 kb on + strand at 997.346 kb on + strand at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.410 kb on - strand, within MPMX19_03576 at 997.475 kb on + strand, within MPMX19_03576 at 997.475 kb on + strand, within MPMX19_03576 at 997.476 kb on - strand, within MPMX19_03576 at 997.476 kb on - strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.932 kb on - strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.965 kb on - strand, within MPMX19_03576 at 998.141 kb on + strand, within MPMX19_03576 at 998.141 kb on + strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.354 kb on + strand at 998.355 kb on - strand at 998.423 kb on + strand at 998.736 kb on + strand, within MPMX19_03577 at 998.736 kb on + strand, within MPMX19_03577 at 998.736 kb on + strand, within MPMX19_03577 at 998.736 kb on + strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.799 kb on + strand, within MPMX19_03577 at 998.799 kb on + strand, within MPMX19_03577 at 998.799 kb on + strand, within MPMX19_03577 at 998.800 kb on - strand, within MPMX19_03577 at 998.800 kb on - strand, within MPMX19_03577 at 998.800 kb on - strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.981 kb on - strand, within MPMX19_03577 at 998.981 kb on - strand, within MPMX19_03577 at 999.177 kb on + strand, within MPMX19_03577 at 999.177 kb on + strand, within MPMX19_03577 at 999.177 kb on + strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.391 kb on + strand at 999.392 kb on - strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.409 kb on - strand at 999.409 kb on - strand at 999.409 kb on - strand at 999.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 996,318 + -0.2 996,381 + MPMX19_03575 0.11 -1.9 996,382 - MPMX19_03575 0.11 -0.1 996,382 - MPMX19_03575 0.11 +0.3 996,382 - MPMX19_03575 0.11 -1.6 996,663 + MPMX19_03575 0.47 +0.6 996,708 + MPMX19_03575 0.53 -2.3 996,709 - MPMX19_03575 0.53 +0.5 996,709 - MPMX19_03575 0.53 -1.3 996,709 - MPMX19_03575 0.53 -0.2 996,709 - MPMX19_03575 0.53 -0.1 996,709 - MPMX19_03575 0.53 -0.6 997,005 + +1.4 997,133 + +0.2 997,133 + +0.4 997,133 + -0.4 997,133 + -0.5 997,133 + +0.1 997,133 + +1.0 997,133 + +0.4 997,133 + -0.3 997,133 + +1.3 997,134 - +0.2 997,134 - +0.9 997,134 - -0.3 997,134 - +0.9 997,134 - -1.1 997,139 + -0.1 997,140 - -1.9 997,140 - -1.8 997,140 - +1.7 997,140 - -0.9 997,140 - -1.3 997,237 + +0.5 997,237 + +0.5 997,346 + +0.4 997,409 + MPMX19_03576 0.15 +0.7 997,409 + MPMX19_03576 0.15 -1.9 997,409 + MPMX19_03576 0.15 +0.5 997,409 + MPMX19_03576 0.15 -0.2 997,410 - MPMX19_03576 0.15 +0.3 997,475 + MPMX19_03576 0.21 +0.3 997,475 + MPMX19_03576 0.21 -0.2 997,476 - MPMX19_03576 0.21 -0.3 997,476 - MPMX19_03576 0.21 +1.9 997,925 + MPMX19_03576 0.58 +0.2 997,925 + MPMX19_03576 0.58 +1.3 997,925 + MPMX19_03576 0.58 -0.4 997,925 + MPMX19_03576 0.58 +0.2 997,925 + MPMX19_03576 0.58 +0.3 997,925 + MPMX19_03576 0.58 -0.5 997,925 + MPMX19_03576 0.58 -1.6 997,925 + MPMX19_03576 0.58 +0.4 997,925 + MPMX19_03576 0.58 -0.3 997,926 - MPMX19_03576 0.58 -0.5 997,926 - MPMX19_03576 0.58 -0.6 997,926 - MPMX19_03576 0.58 +0.4 997,926 - MPMX19_03576 0.58 -1.5 997,926 - MPMX19_03576 0.58 +0.6 997,926 - MPMX19_03576 0.58 +1.0 997,926 - MPMX19_03576 0.58 +0.2 997,926 - MPMX19_03576 0.58 -0.5 997,926 - MPMX19_03576 0.58 +0.6 997,931 + MPMX19_03576 0.59 -0.1 997,931 + MPMX19_03576 0.59 -0.1 997,932 - MPMX19_03576 0.59 -0.9 997,952 + MPMX19_03576 0.60 +1.9 997,952 + MPMX19_03576 0.60 -0.2 997,952 + MPMX19_03576 0.60 -0.9 997,952 + MPMX19_03576 0.60 -0.4 997,952 + MPMX19_03576 0.60 +0.5 997,953 - MPMX19_03576 0.60 +0.5 997,953 - MPMX19_03576 0.60 -1.3 997,953 - MPMX19_03576 0.60 -0.2 997,953 - MPMX19_03576 0.60 -0.1 997,953 - MPMX19_03576 0.60 -0.8 997,953 - MPMX19_03576 0.60 -0.3 997,953 - MPMX19_03576 0.60 +0.8 997,955 + MPMX19_03576 0.61 -0.9 997,955 + MPMX19_03576 0.61 +0.4 997,955 + MPMX19_03576 0.61 -0.6 997,955 + MPMX19_03576 0.61 +1.2 997,955 + MPMX19_03576 0.61 +1.2 997,955 + MPMX19_03576 0.61 +0.2 997,955 + MPMX19_03576 0.61 +0.1 997,955 + MPMX19_03576 0.61 -1.1 997,955 + MPMX19_03576 0.61 -1.5 997,955 + MPMX19_03576 0.61 +0.1 997,956 - MPMX19_03576 0.61 -0.6 997,956 - MPMX19_03576 0.61 +0.1 997,956 - MPMX19_03576 0.61 -1.1 997,956 - MPMX19_03576 0.61 +0.5 997,956 - MPMX19_03576 0.61 +0.1 997,956 - MPMX19_03576 0.61 -0.2 997,956 - MPMX19_03576 0.61 -2.3 997,956 - MPMX19_03576 0.61 +0.9 997,956 - MPMX19_03576 0.61 +0.7 997,956 - MPMX19_03576 0.61 +0.9 997,956 - MPMX19_03576 0.61 +0.2 997,956 - MPMX19_03576 0.61 +1.6 997,956 - MPMX19_03576 0.61 +1.5 997,964 + MPMX19_03576 0.61 +0.5 997,964 + MPMX19_03576 0.61 +2.5 997,964 + MPMX19_03576 0.61 +0.8 997,965 - MPMX19_03576 0.61 -1.5 998,141 + MPMX19_03576 0.76 -0.1 998,141 + MPMX19_03576 0.76 -0.4 998,142 - MPMX19_03576 0.76 -0.3 998,142 - MPMX19_03576 0.76 -0.8 998,142 - MPMX19_03576 0.76 -0.3 998,142 - MPMX19_03576 0.76 -0.2 998,222 + MPMX19_03576 0.83 -0.1 998,222 + MPMX19_03576 0.83 +0.1 998,222 + MPMX19_03576 0.83 -0.7 998,222 + MPMX19_03576 0.83 -0.1 998,222 + MPMX19_03576 0.83 +0.5 998,222 + MPMX19_03576 0.83 +0.5 998,222 + MPMX19_03576 0.83 +0.9 998,223 - MPMX19_03576 0.83 -0.8 998,223 - MPMX19_03576 0.83 -1.8 998,223 - MPMX19_03576 0.83 -0.1 998,223 - MPMX19_03576 0.83 -0.5 998,223 - MPMX19_03576 0.83 +0.3 998,223 - MPMX19_03576 0.83 +0.4 998,223 - MPMX19_03576 0.83 +0.3 998,223 - MPMX19_03576 0.83 +0.5 998,223 - MPMX19_03576 0.83 -0.2 998,354 + -0.8 998,355 - -0.6 998,423 + -1.7 998,736 + MPMX19_03577 0.28 -1.5 998,736 + MPMX19_03577 0.28 -2.7 998,736 + MPMX19_03577 0.28 +0.9 998,736 + MPMX19_03577 0.28 -1.3 998,737 - MPMX19_03577 0.28 -0.8 998,737 - MPMX19_03577 0.28 -0.1 998,737 - MPMX19_03577 0.28 -0.8 998,737 - MPMX19_03577 0.28 -0.7 998,737 - MPMX19_03577 0.28 +0.9 998,737 - MPMX19_03577 0.28 -0.9 998,737 - MPMX19_03577 0.28 +0.3 998,737 - MPMX19_03577 0.28 -0.6 998,737 - MPMX19_03577 0.28 -0.6 998,737 - MPMX19_03577 0.28 -0.5 998,737 - MPMX19_03577 0.28 -0.7 998,737 - MPMX19_03577 0.28 +1.7 998,737 - MPMX19_03577 0.28 -0.3 998,799 + MPMX19_03577 0.35 +0.0 998,799 + MPMX19_03577 0.35 -0.3 998,799 + MPMX19_03577 0.35 -0.5 998,800 - MPMX19_03577 0.35 +0.3 998,800 - MPMX19_03577 0.35 -0.2 998,800 - MPMX19_03577 0.35 -1.6 998,980 + MPMX19_03577 0.55 -1.5 998,980 + MPMX19_03577 0.55 +1.1 998,980 + MPMX19_03577 0.55 -1.1 998,980 + MPMX19_03577 0.55 -0.2 998,980 + MPMX19_03577 0.55 -0.5 998,981 - MPMX19_03577 0.55 -1.5 998,981 - MPMX19_03577 0.55 +0.2 999,177 + MPMX19_03577 0.77 +1.1 999,177 + MPMX19_03577 0.77 -1.5 999,177 + MPMX19_03577 0.77 +0.5 999,178 - MPMX19_03577 0.77 +0.3 999,178 - MPMX19_03577 0.77 +0.2 999,178 - MPMX19_03577 0.77 -0.7 999,178 - MPMX19_03577 0.77 -0.4 999,178 - MPMX19_03577 0.77 -0.5 999,178 - MPMX19_03577 0.77 +0.4 999,178 - MPMX19_03577 0.77 +0.6 999,178 - MPMX19_03577 0.77 -0.6 999,391 + -1.7 999,392 - -0.6 999,408 + +0.1 999,408 + -1.8 999,408 + +0.4 999,408 + +0.4 999,408 + -1.3 999,408 + -0.7 999,409 - +0.1 999,409 - +0.3 999,409 - -0.4 999,409 - -0.1
Or see this region's nucleotide sequence