Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03504 and MPMX19_03505 are separated by 71 nucleotides MPMX19_03505 and MPMX19_03506 are separated by 43 nucleotides MPMX19_03506 and MPMX19_03507 overlap by 4 nucleotides MPMX19_03507 and MPMX19_03508 overlap by 4 nucleotides
MPMX19_03504: MPMX19_03504 - Sulfur carrier protein FdhD, at 921,501 to 922,283
_03504
MPMX19_03505: MPMX19_03505 - putative formate transporter 1, at 922,355 to 923,263
_03505
MPMX19_03506: MPMX19_03506 - Hydrogenase 3 maturation protease, at 923,307 to 923,765
_03506
MPMX19_03507: MPMX19_03507 - hypothetical protein, at 923,762 to 924,229
_03507
MPMX19_03508: MPMX19_03508 - Formate hydrogenlyase subunit 7, at 924,226 to 925,029
_03508
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2 at 921.414 kb on - strand at 921.437 kb on + strand at 921.437 kb on + strand at 921.437 kb on + strand at 921.438 kb on - strand at 921.438 kb on - strand at 921.582 kb on + strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 922.248 kb on + strand at 922.248 kb on + strand at 922.249 kb on - strand at 922.249 kb on - strand at 922.249 kb on - strand at 922.249 kb on - strand at 922.333 kb on - strand at 922.333 kb on - strand at 922.333 kb on - strand at 922.333 kb on - strand at 922.437 kb on + strand at 922.438 kb on - strand at 922.438 kb on - strand at 922.438 kb on - strand at 922.449 kb on + strand, within MPMX19_03505 at 922.449 kb on + strand, within MPMX19_03505 at 922.449 kb on + strand, within MPMX19_03505 at 922.449 kb on + strand, within MPMX19_03505 at 922.449 kb on + strand, within MPMX19_03505 at 922.449 kb on + strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.450 kb on - strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.584 kb on + strand, within MPMX19_03505 at 922.585 kb on - strand, within MPMX19_03505 at 922.585 kb on - strand, within MPMX19_03505 at 922.585 kb on - strand, within MPMX19_03505 at 922.602 kb on + strand, within MPMX19_03505 at 922.602 kb on + strand, within MPMX19_03505 at 922.602 kb on + strand, within MPMX19_03505 at 922.603 kb on - strand, within MPMX19_03505 at 922.698 kb on + strand, within MPMX19_03505 at 922.709 kb on + strand, within MPMX19_03505 at 922.846 kb on + strand, within MPMX19_03505 at 922.846 kb on + strand, within MPMX19_03505 at 922.847 kb on - strand, within MPMX19_03505 at 922.847 kb on - strand, within MPMX19_03505 at 922.847 kb on - strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.848 kb on + strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 922.849 kb on - strand, within MPMX19_03505 at 923.214 kb on + strand at 923.214 kb on + strand at 923.215 kb on - strand at 923.215 kb on - strand at 923.215 kb on - strand at 923.215 kb on - strand at 923.324 kb on - strand at 923.324 kb on - strand at 923.751 kb on + strand at 923.752 kb on - strand at 923.752 kb on - strand at 923.787 kb on + strand at 923.787 kb on + strand at 923.787 kb on + strand at 923.788 kb on - strand at 923.788 kb on - strand at 923.788 kb on - strand at 924.078 kb on + strand, within MPMX19_03507 at 924.078 kb on + strand, within MPMX19_03507 at 924.079 kb on - strand, within MPMX19_03507 at 924.079 kb on - strand, within MPMX19_03507 at 924.081 kb on + strand, within MPMX19_03507 at 924.081 kb on + strand, within MPMX19_03507 at 924.081 kb on + strand, within MPMX19_03507 at 924.081 kb on + strand, within MPMX19_03507 at 924.082 kb on - strand, within MPMX19_03507 at 924.082 kb on - strand, within MPMX19_03507 at 924.082 kb on - strand, within MPMX19_03507 at 924.147 kb on + strand, within MPMX19_03507 at 924.147 kb on + strand, within MPMX19_03507 at 924.147 kb on + strand, within MPMX19_03507 at 924.147 kb on + strand, within MPMX19_03507 at 924.147 kb on + strand, within MPMX19_03507 at 924.147 kb on + strand, within MPMX19_03507 at 924.148 kb on - strand, within MPMX19_03507 at 924.148 kb on - strand, within MPMX19_03507 at 924.148 kb on - strand, within MPMX19_03507 at 924.148 kb on - strand, within MPMX19_03507 at 924.216 kb on - strand at 924.216 kb on - strand at 924.216 kb on - strand at 924.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 921,414 - -0.2 921,437 + +2.5 921,437 + +0.3 921,437 + -0.2 921,438 - -0.0 921,438 - +0.4 921,582 + MPMX19_03504 0.10 -1.8 921,583 - MPMX19_03504 0.10 +0.4 921,583 - MPMX19_03504 0.10 -0.6 921,583 - MPMX19_03504 0.10 -1.1 921,583 - MPMX19_03504 0.10 -1.5 921,583 - MPMX19_03504 0.10 -0.5 921,583 - MPMX19_03504 0.10 +0.5 922,248 + +0.1 922,248 + -2.2 922,249 - +0.1 922,249 - +0.8 922,249 - +0.4 922,249 - +0.1 922,333 - +2.3 922,333 - +0.1 922,333 - -0.8 922,333 - -0.1 922,437 + +1.2 922,438 - -1.4 922,438 - +0.2 922,438 - +0.6 922,449 + MPMX19_03505 0.10 -0.8 922,449 + MPMX19_03505 0.10 +0.4 922,449 + MPMX19_03505 0.10 -0.5 922,449 + MPMX19_03505 0.10 -1.5 922,449 + MPMX19_03505 0.10 +1.0 922,449 + MPMX19_03505 0.10 -0.4 922,450 - MPMX19_03505 0.10 +0.9 922,450 - MPMX19_03505 0.10 -0.9 922,450 - MPMX19_03505 0.10 -0.3 922,450 - MPMX19_03505 0.10 -2.2 922,450 - MPMX19_03505 0.10 -0.3 922,450 - MPMX19_03505 0.10 +0.6 922,450 - MPMX19_03505 0.10 +0.0 922,450 - MPMX19_03505 0.10 -0.4 922,450 - MPMX19_03505 0.10 -0.5 922,450 - MPMX19_03505 0.10 +0.1 922,450 - MPMX19_03505 0.10 +0.3 922,450 - MPMX19_03505 0.10 -0.1 922,584 + MPMX19_03505 0.25 -1.7 922,584 + MPMX19_03505 0.25 -0.6 922,584 + MPMX19_03505 0.25 +0.8 922,584 + MPMX19_03505 0.25 -0.2 922,584 + MPMX19_03505 0.25 +0.3 922,584 + MPMX19_03505 0.25 -0.9 922,584 + MPMX19_03505 0.25 +0.4 922,584 + MPMX19_03505 0.25 -0.7 922,585 - MPMX19_03505 0.25 -0.1 922,585 - MPMX19_03505 0.25 -2.3 922,585 - MPMX19_03505 0.25 -0.1 922,602 + MPMX19_03505 0.27 -0.2 922,602 + MPMX19_03505 0.27 -0.1 922,602 + MPMX19_03505 0.27 -0.1 922,603 - MPMX19_03505 0.27 -0.3 922,698 + MPMX19_03505 0.38 +0.5 922,709 + MPMX19_03505 0.39 -0.3 922,846 + MPMX19_03505 0.54 +1.5 922,846 + MPMX19_03505 0.54 -0.3 922,847 - MPMX19_03505 0.54 -1.5 922,847 - MPMX19_03505 0.54 -0.9 922,847 - MPMX19_03505 0.54 +1.9 922,848 + MPMX19_03505 0.54 -0.5 922,848 + MPMX19_03505 0.54 +0.2 922,848 + MPMX19_03505 0.54 -0.7 922,848 + MPMX19_03505 0.54 -0.2 922,848 + MPMX19_03505 0.54 +0.2 922,848 + MPMX19_03505 0.54 -0.8 922,848 + MPMX19_03505 0.54 -0.1 922,848 + MPMX19_03505 0.54 +0.7 922,848 + MPMX19_03505 0.54 +0.3 922,848 + MPMX19_03505 0.54 +0.8 922,848 + MPMX19_03505 0.54 -0.5 922,848 + MPMX19_03505 0.54 +0.5 922,848 + MPMX19_03505 0.54 +1.5 922,848 + MPMX19_03505 0.54 +0.5 922,848 + MPMX19_03505 0.54 -1.1 922,848 + MPMX19_03505 0.54 +1.5 922,848 + MPMX19_03505 0.54 +1.0 922,849 - MPMX19_03505 0.54 +0.4 922,849 - MPMX19_03505 0.54 -0.5 922,849 - MPMX19_03505 0.54 -0.3 922,849 - MPMX19_03505 0.54 -2.5 922,849 - MPMX19_03505 0.54 -0.6 922,849 - MPMX19_03505 0.54 -1.6 922,849 - MPMX19_03505 0.54 +0.3 922,849 - MPMX19_03505 0.54 -0.4 922,849 - MPMX19_03505 0.54 +0.4 922,849 - MPMX19_03505 0.54 -0.2 922,849 - MPMX19_03505 0.54 -0.7 922,849 - MPMX19_03505 0.54 +0.6 922,849 - MPMX19_03505 0.54 -1.7 922,849 - MPMX19_03505 0.54 -0.7 922,849 - MPMX19_03505 0.54 -1.4 922,849 - MPMX19_03505 0.54 +0.2 922,849 - MPMX19_03505 0.54 -0.3 922,849 - MPMX19_03505 0.54 -1.3 922,849 - MPMX19_03505 0.54 -1.2 922,849 - MPMX19_03505 0.54 +0.0 922,849 - MPMX19_03505 0.54 -1.3 922,849 - MPMX19_03505 0.54 -0.3 922,849 - MPMX19_03505 0.54 -0.3 922,849 - MPMX19_03505 0.54 -0.1 923,214 + -1.5 923,214 + -2.1 923,215 - -2.1 923,215 - +0.2 923,215 - -0.7 923,215 - +1.6 923,324 - -0.2 923,324 - -0.2 923,751 + -0.5 923,752 - +0.9 923,752 - -0.6 923,787 + -0.3 923,787 + -1.4 923,787 + +1.2 923,788 - +0.3 923,788 - -0.7 923,788 - +0.3 924,078 + MPMX19_03507 0.68 -0.5 924,078 + MPMX19_03507 0.68 +0.5 924,079 - MPMX19_03507 0.68 +0.1 924,079 - MPMX19_03507 0.68 +0.2 924,081 + MPMX19_03507 0.68 +0.3 924,081 + MPMX19_03507 0.68 -0.5 924,081 + MPMX19_03507 0.68 -0.7 924,081 + MPMX19_03507 0.68 -0.2 924,082 - MPMX19_03507 0.68 +0.1 924,082 - MPMX19_03507 0.68 -0.3 924,082 - MPMX19_03507 0.68 +1.0 924,147 + MPMX19_03507 0.82 -0.3 924,147 + MPMX19_03507 0.82 -1.2 924,147 + MPMX19_03507 0.82 +0.1 924,147 + MPMX19_03507 0.82 -1.7 924,147 + MPMX19_03507 0.82 +0.3 924,147 + MPMX19_03507 0.82 -0.1 924,148 - MPMX19_03507 0.82 -0.9 924,148 - MPMX19_03507 0.82 +1.0 924,148 - MPMX19_03507 0.82 +0.8 924,148 - MPMX19_03507 0.82 +0.9 924,216 - +0.1 924,216 - -0.1 924,216 - -0.6 924,216 - -1.9
Or see this region's nucleotide sequence