Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03366 and MPMX19_03367 are separated by 34 nucleotides MPMX19_03367 and MPMX19_03368 are separated by 390 nucleotides MPMX19_03368 and MPMX19_03369 overlap by 13 nucleotides MPMX19_03369 and MPMX19_03370 overlap by 4 nucleotides
MPMX19_03366: MPMX19_03366 - hypothetical protein, at 740,873 to 741,043
_03366
MPMX19_03367: MPMX19_03367 - Magnetosome membrane protein 22, at 741,078 to 741,581
_03367
MPMX19_03368: MPMX19_03368 - hypothetical protein, at 741,972 to 745,289
_03368
MPMX19_03369: MPMX19_03369 - hypothetical protein, at 745,277 to 746,047
_03369
MPMX19_03370: MPMX19_03370 - hypothetical protein, at 746,044 to 746,520
_03370
Position (kb) 741
742
743
744
745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.178 kb on + strand, within MPMX19_03367 at 741.179 kb on - strand, within MPMX19_03367 at 741.433 kb on + strand, within MPMX19_03367 at 741.433 kb on + strand, within MPMX19_03367 at 741.433 kb on + strand, within MPMX19_03367 at 741.434 kb on - strand, within MPMX19_03367 at 741.434 kb on - strand, within MPMX19_03367 at 741.434 kb on - strand, within MPMX19_03367 at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.542 kb on - strand at 741.542 kb on - strand at 741.542 kb on - strand at 741.570 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.763 kb on - strand at 741.773 kb on - strand at 741.773 kb on - strand at 741.783 kb on - strand at 741.790 kb on - strand at 741.805 kb on + strand at 741.805 kb on + strand at 741.822 kb on - strand at 741.822 kb on - strand at 741.887 kb on + strand at 741.924 kb on + strand at 741.944 kb on + strand at 741.973 kb on + strand at 741.973 kb on + strand at 741.974 kb on - strand at 742.068 kb on - strand at 742.068 kb on - strand at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.500 kb on - strand, within MPMX19_03368 at 742.500 kb on - strand, within MPMX19_03368 at 742.558 kb on + strand, within MPMX19_03368 at 742.558 kb on + strand, within MPMX19_03368 at 742.559 kb on - strand, within MPMX19_03368 at 742.559 kb on - strand, within MPMX19_03368 at 742.780 kb on + strand, within MPMX19_03368 at 742.780 kb on + strand, within MPMX19_03368 at 742.780 kb on + strand, within MPMX19_03368 at 743.533 kb on + strand, within MPMX19_03368 at 743.534 kb on - strand, within MPMX19_03368 at 743.534 kb on - strand, within MPMX19_03368 at 743.534 kb on - strand, within MPMX19_03368 at 743.534 kb on - strand, within MPMX19_03368 at 743.534 kb on - strand, within MPMX19_03368 at 743.594 kb on - strand, within MPMX19_03368 at 743.594 kb on - strand, within MPMX19_03368 at 744.404 kb on + strand, within MPMX19_03368 at 744.404 kb on + strand, within MPMX19_03368 at 744.404 kb on + strand, within MPMX19_03368 at 744.405 kb on - strand, within MPMX19_03368 at 744.436 kb on + strand, within MPMX19_03368 at 744.436 kb on + strand, within MPMX19_03368 at 744.437 kb on - strand, within MPMX19_03368 at 744.437 kb on - strand, within MPMX19_03368 at 744.973 kb on + strand at 744.973 kb on + strand at 744.973 kb on + strand at 744.973 kb on + strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 745.162 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.204 kb on + strand at 745.205 kb on - strand at 745.205 kb on - strand at 745.281 kb on + strand at 745.282 kb on - strand at 745.282 kb on - strand at 745.282 kb on - strand at 745.474 kb on - strand, within MPMX19_03369 at 745.474 kb on - strand, within MPMX19_03369 at 745.608 kb on + strand, within MPMX19_03369 at 745.609 kb on - strand, within MPMX19_03369 at 746.039 kb on + strand at 746.040 kb on - strand at 746.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 741,027 + -0.3 741,027 + -0.3 741,027 + +0.6 741,027 + -1.2 741,027 + -2.2 741,027 + +0.5 741,027 + -0.2 741,027 + -0.3 741,027 + +0.1 741,027 + -0.1 741,027 + +0.0 741,027 + -0.6 741,028 - +0.6 741,028 - -0.4 741,028 - +0.2 741,028 - +0.8 741,028 - -1.3 741,028 - +0.5 741,028 - -0.4 741,028 - +0.5 741,028 - -2.0 741,028 - +1.6 741,028 - -2.3 741,178 + MPMX19_03367 0.20 +0.2 741,179 - MPMX19_03367 0.20 -0.2 741,433 + MPMX19_03367 0.70 -1.5 741,433 + MPMX19_03367 0.70 -0.5 741,433 + MPMX19_03367 0.70 -0.0 741,434 - MPMX19_03367 0.71 -0.3 741,434 - MPMX19_03367 0.71 -0.7 741,434 - MPMX19_03367 0.71 +1.0 741,532 + +0.0 741,532 + -1.1 741,532 + -0.5 741,532 + +0.3 741,532 + -2.3 741,532 + +0.1 741,532 + -0.2 741,532 + -1.5 741,532 + -0.4 741,533 - -1.0 741,533 - +1.1 741,533 - +0.7 741,533 - +0.2 741,533 - -1.5 741,533 - +0.4 741,541 + +0.1 741,541 + +0.2 741,541 + +1.1 741,541 + -1.2 741,541 + +0.3 741,542 - -0.4 741,542 - -0.7 741,542 - -1.8 741,570 - -1.1 741,577 - +0.3 741,577 - -0.4 741,577 - -0.7 741,577 - +0.2 741,577 - +0.7 741,577 - -1.3 741,763 - -2.0 741,773 - -1.7 741,773 - -0.0 741,783 - +1.1 741,790 - -3.4 741,805 + -0.0 741,805 + -1.8 741,822 - +0.2 741,822 - +0.5 741,887 + -0.0 741,924 + -1.0 741,944 + +0.0 741,973 + -1.2 741,973 + +1.5 741,974 - -0.5 742,068 - -2.9 742,068 - +1.1 742,417 + MPMX19_03368 0.13 -0.5 742,417 + MPMX19_03368 0.13 -1.3 742,417 + MPMX19_03368 0.13 -0.3 742,417 + MPMX19_03368 0.13 +0.2 742,417 + MPMX19_03368 0.13 +0.3 742,417 + MPMX19_03368 0.13 -0.5 742,417 + MPMX19_03368 0.13 -1.5 742,418 - MPMX19_03368 0.13 +0.2 742,418 - MPMX19_03368 0.13 +0.5 742,418 - MPMX19_03368 0.13 -1.9 742,418 - MPMX19_03368 0.13 +0.4 742,418 - MPMX19_03368 0.13 -1.6 742,500 - MPMX19_03368 0.16 -1.1 742,500 - MPMX19_03368 0.16 -0.8 742,558 + MPMX19_03368 0.18 -0.2 742,558 + MPMX19_03368 0.18 -0.3 742,559 - MPMX19_03368 0.18 -0.1 742,559 - MPMX19_03368 0.18 +0.5 742,780 + MPMX19_03368 0.24 +0.6 742,780 + MPMX19_03368 0.24 -1.0 742,780 + MPMX19_03368 0.24 -1.1 743,533 + MPMX19_03368 0.47 -0.8 743,534 - MPMX19_03368 0.47 -1.1 743,534 - MPMX19_03368 0.47 -0.1 743,534 - MPMX19_03368 0.47 +0.1 743,534 - MPMX19_03368 0.47 -1.3 743,534 - MPMX19_03368 0.47 -1.7 743,594 - MPMX19_03368 0.49 +0.1 743,594 - MPMX19_03368 0.49 -0.1 744,404 + MPMX19_03368 0.73 +1.5 744,404 + MPMX19_03368 0.73 +0.3 744,404 + MPMX19_03368 0.73 -1.7 744,405 - MPMX19_03368 0.73 -0.9 744,436 + MPMX19_03368 0.74 +0.4 744,436 + MPMX19_03368 0.74 -0.4 744,437 - MPMX19_03368 0.74 +0.5 744,437 - MPMX19_03368 0.74 -0.8 744,973 + -0.6 744,973 + +0.3 744,973 + -0.1 744,973 + -0.1 744,974 - +0.7 744,974 - -1.4 744,974 - +0.2 744,974 - +0.3 744,974 - -1.4 744,974 - -0.2 744,974 - -0.3 744,974 - +0.0 744,974 - +0.6 745,162 + +0.8 745,171 + -2.1 745,171 + -0.4 745,171 + -0.8 745,171 + +0.0 745,171 + +1.3 745,171 + +0.5 745,171 + +0.3 745,171 + -0.6 745,171 + -2.1 745,171 + -0.5 745,171 + +1.1 745,171 + -1.4 745,171 + -0.7 745,171 + -0.8 745,171 + +2.1 745,171 + -1.3 745,171 + -1.2 745,171 + -2.5 745,171 + -1.0 745,172 - -0.2 745,172 - +0.1 745,172 - +0.3 745,172 - -0.6 745,172 - -1.3 745,172 - -0.1 745,172 - -1.5 745,172 - -0.4 745,172 - +0.9 745,172 - +0.2 745,172 - -0.7 745,172 - -0.9 745,172 - -0.2 745,172 - -0.5 745,172 - -2.3 745,172 - +1.7 745,172 - -0.2 745,172 - -1.1 745,204 + +1.3 745,205 - -0.9 745,205 - -1.4 745,281 + +0.6 745,282 - -0.5 745,282 - -0.5 745,282 - -0.1 745,474 - MPMX19_03369 0.26 +0.2 745,474 - MPMX19_03369 0.26 -0.5 745,608 + MPMX19_03369 0.43 -0.5 745,609 - MPMX19_03369 0.43 -0.5 746,039 + -0.5 746,040 - -1.1 746,040 - -0.8
Or see this region's nucleotide sequence