Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03291 and MPMX19_03292 are separated by 114 nucleotides MPMX19_03292 and MPMX19_03293 are separated by 43 nucleotides MPMX19_03293 and MPMX19_03294 are separated by 6 nucleotides
MPMX19_03291: MPMX19_03291 - hypothetical protein, at 638,420 to 639,148
_03291
MPMX19_03292: MPMX19_03292 - hypothetical protein, at 639,263 to 639,808
_03292
MPMX19_03293: MPMX19_03293 - Taurine--pyruvate aminotransferase, at 639,852 to 641,168
_03293
MPMX19_03294: MPMX19_03294 - Homoserine kinase, at 641,175 to 642,212
_03294
Position (kb) 639
640
641
642 Strain fitness (log2 ratio) -2
-1
0
1
2 at 638.942 kb on + strand, within MPMX19_03291 at 638.942 kb on + strand, within MPMX19_03291 at 639.146 kb on + strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.254 kb on + strand at 639.254 kb on + strand at 639.254 kb on + strand at 639.254 kb on + strand at 639.255 kb on - strand at 639.497 kb on + strand, within MPMX19_03292 at 639.736 kb on + strand, within MPMX19_03292 at 639.736 kb on + strand, within MPMX19_03292 at 639.737 kb on - strand, within MPMX19_03292 at 639.743 kb on + strand, within MPMX19_03292 at 639.743 kb on + strand, within MPMX19_03292 at 639.744 kb on - strand, within MPMX19_03292 at 640.246 kb on + strand, within MPMX19_03293 at 640.246 kb on + strand, within MPMX19_03293 at 640.247 kb on - strand, within MPMX19_03293 at 640.247 kb on - strand, within MPMX19_03293 at 640.410 kb on + strand, within MPMX19_03293 at 640.411 kb on - strand, within MPMX19_03293 at 640.411 kb on - strand, within MPMX19_03293 at 640.411 kb on - strand, within MPMX19_03293 at 640.621 kb on + strand, within MPMX19_03293 at 640.622 kb on - strand, within MPMX19_03293 at 640.721 kb on - strand, within MPMX19_03293 at 640.721 kb on - strand, within MPMX19_03293 at 640.721 kb on - strand, within MPMX19_03293 at 640.721 kb on - strand, within MPMX19_03293 at 640.721 kb on - strand, within MPMX19_03293 at 640.888 kb on + strand, within MPMX19_03293 at 640.889 kb on - strand, within MPMX19_03293 at 640.889 kb on - strand, within MPMX19_03293 at 640.978 kb on + strand, within MPMX19_03293 at 640.979 kb on - strand, within MPMX19_03293 at 640.979 kb on - strand, within MPMX19_03293 at 640.979 kb on - strand, within MPMX19_03293 at 640.991 kb on - strand, within MPMX19_03293 at 641.011 kb on + strand, within MPMX19_03293 at 641.011 kb on + strand, within MPMX19_03293 at 641.011 kb on + strand, within MPMX19_03293 at 641.012 kb on - strand, within MPMX19_03293 at 641.012 kb on - strand, within MPMX19_03293 at 641.056 kb on + strand at 641.056 kb on + strand at 641.056 kb on + strand at 641.057 kb on - strand at 641.057 kb on - strand at 641.069 kb on - strand at 641.150 kb on - strand at 641.150 kb on - strand at 641.281 kb on + strand, within MPMX19_03294 at 641.281 kb on + strand, within MPMX19_03294 at 641.281 kb on + strand, within MPMX19_03294 at 641.281 kb on + strand, within MPMX19_03294 at 641.281 kb on + strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.282 kb on - strand, within MPMX19_03294 at 641.407 kb on + strand, within MPMX19_03294 at 641.408 kb on - strand, within MPMX19_03294 at 641.408 kb on - strand, within MPMX19_03294 at 641.464 kb on + strand, within MPMX19_03294 at 641.465 kb on - strand, within MPMX19_03294 at 641.465 kb on - strand, within MPMX19_03294 at 641.465 kb on - strand, within MPMX19_03294 at 641.692 kb on + strand, within MPMX19_03294 at 641.692 kb on + strand, within MPMX19_03294 at 641.692 kb on + strand, within MPMX19_03294 at 641.692 kb on + strand, within MPMX19_03294 at 641.692 kb on + strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.693 kb on - strand, within MPMX19_03294 at 641.767 kb on + strand, within MPMX19_03294 at 641.768 kb on - strand, within MPMX19_03294 at 641.768 kb on - strand, within MPMX19_03294 at 641.866 kb on + strand, within MPMX19_03294 at 641.867 kb on - strand, within MPMX19_03294 at 641.867 kb on - strand, within MPMX19_03294 at 641.867 kb on - strand, within MPMX19_03294 at 641.867 kb on - strand, within MPMX19_03294 at 642.052 kb on + strand, within MPMX19_03294 at 642.052 kb on + strand, within MPMX19_03294 at 642.052 kb on + strand, within MPMX19_03294 at 642.052 kb on + strand, within MPMX19_03294 at 642.053 kb on - strand, within MPMX19_03294 at 642.053 kb on - strand, within MPMX19_03294 at 642.053 kb on - strand, within MPMX19_03294 at 642.053 kb on - strand, within MPMX19_03294 at 642.053 kb on - strand, within MPMX19_03294 at 642.053 kb on - strand, within MPMX19_03294 at 642.053 kb on - strand, within MPMX19_03294
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 638,942 + MPMX19_03291 0.72 -0.8 638,942 + MPMX19_03291 0.72 -0.1 639,146 + -0.4 639,147 - +2.1 639,147 - +0.5 639,147 - -0.0 639,147 - -0.7 639,147 - +0.1 639,147 - -2.3 639,147 - +2.1 639,254 + -1.1 639,254 + -0.4 639,254 + -0.2 639,254 + -1.8 639,255 - -0.2 639,497 + MPMX19_03292 0.43 -0.5 639,736 + MPMX19_03292 0.87 -0.8 639,736 + MPMX19_03292 0.87 +0.1 639,737 - MPMX19_03292 0.87 +0.1 639,743 + MPMX19_03292 0.88 -0.8 639,743 + MPMX19_03292 0.88 -2.1 639,744 - MPMX19_03292 0.88 -0.3 640,246 + MPMX19_03293 0.30 +0.3 640,246 + MPMX19_03293 0.30 -1.5 640,247 - MPMX19_03293 0.30 +0.2 640,247 - MPMX19_03293 0.30 -0.5 640,410 + MPMX19_03293 0.42 -0.9 640,411 - MPMX19_03293 0.42 +0.3 640,411 - MPMX19_03293 0.42 +0.1 640,411 - MPMX19_03293 0.42 -0.6 640,621 + MPMX19_03293 0.58 +0.7 640,622 - MPMX19_03293 0.58 +0.3 640,721 - MPMX19_03293 0.66 -1.5 640,721 - MPMX19_03293 0.66 -0.5 640,721 - MPMX19_03293 0.66 +0.5 640,721 - MPMX19_03293 0.66 -0.7 640,721 - MPMX19_03293 0.66 -0.3 640,888 + MPMX19_03293 0.79 +0.7 640,889 - MPMX19_03293 0.79 -1.7 640,889 - MPMX19_03293 0.79 -0.7 640,978 + MPMX19_03293 0.85 -0.5 640,979 - MPMX19_03293 0.86 -1.2 640,979 - MPMX19_03293 0.86 -1.9 640,979 - MPMX19_03293 0.86 -1.0 640,991 - MPMX19_03293 0.86 +0.5 641,011 + MPMX19_03293 0.88 +0.6 641,011 + MPMX19_03293 0.88 -0.7 641,011 + MPMX19_03293 0.88 -0.3 641,012 - MPMX19_03293 0.88 -0.3 641,012 - MPMX19_03293 0.88 -0.1 641,056 + +0.4 641,056 + +0.0 641,056 + -1.3 641,057 - -1.9 641,057 - -0.3 641,069 - +0.6 641,150 - +0.9 641,150 - +0.0 641,281 + MPMX19_03294 0.10 -0.2 641,281 + MPMX19_03294 0.10 -1.7 641,281 + MPMX19_03294 0.10 -0.1 641,281 + MPMX19_03294 0.10 -0.4 641,281 + MPMX19_03294 0.10 -0.3 641,282 - MPMX19_03294 0.10 -1.7 641,282 - MPMX19_03294 0.10 -0.5 641,282 - MPMX19_03294 0.10 +0.7 641,282 - MPMX19_03294 0.10 +0.5 641,282 - MPMX19_03294 0.10 -0.9 641,282 - MPMX19_03294 0.10 -0.5 641,282 - MPMX19_03294 0.10 -0.6 641,282 - MPMX19_03294 0.10 -1.4 641,282 - MPMX19_03294 0.10 -0.2 641,282 - MPMX19_03294 0.10 -0.6 641,282 - MPMX19_03294 0.10 +1.5 641,407 + MPMX19_03294 0.22 -0.1 641,408 - MPMX19_03294 0.22 +0.0 641,408 - MPMX19_03294 0.22 -0.3 641,464 + MPMX19_03294 0.28 -2.1 641,465 - MPMX19_03294 0.28 -0.7 641,465 - MPMX19_03294 0.28 -0.2 641,465 - MPMX19_03294 0.28 +0.4 641,692 + MPMX19_03294 0.50 -1.3 641,692 + MPMX19_03294 0.50 -0.4 641,692 + MPMX19_03294 0.50 +1.5 641,692 + MPMX19_03294 0.50 +0.7 641,692 + MPMX19_03294 0.50 -0.9 641,693 - MPMX19_03294 0.50 -1.8 641,693 - MPMX19_03294 0.50 -0.3 641,693 - MPMX19_03294 0.50 +0.1 641,693 - MPMX19_03294 0.50 +0.0 641,693 - MPMX19_03294 0.50 -1.0 641,693 - MPMX19_03294 0.50 -2.1 641,693 - MPMX19_03294 0.50 -0.7 641,693 - MPMX19_03294 0.50 -0.2 641,693 - MPMX19_03294 0.50 +0.3 641,693 - MPMX19_03294 0.50 -1.7 641,767 + MPMX19_03294 0.57 -1.3 641,768 - MPMX19_03294 0.57 -0.4 641,768 - MPMX19_03294 0.57 -1.5 641,866 + MPMX19_03294 0.67 -1.2 641,867 - MPMX19_03294 0.67 +0.5 641,867 - MPMX19_03294 0.67 +0.9 641,867 - MPMX19_03294 0.67 -0.8 641,867 - MPMX19_03294 0.67 -0.8 642,052 + MPMX19_03294 0.84 -0.5 642,052 + MPMX19_03294 0.84 -1.8 642,052 + MPMX19_03294 0.84 +0.3 642,052 + MPMX19_03294 0.84 -0.8 642,053 - MPMX19_03294 0.85 -1.7 642,053 - MPMX19_03294 0.85 -1.9 642,053 - MPMX19_03294 0.85 -2.2 642,053 - MPMX19_03294 0.85 -1.8 642,053 - MPMX19_03294 0.85 +0.5 642,053 - MPMX19_03294 0.85 +0.9 642,053 - MPMX19_03294 0.85 -1.5
Or see this region's nucleotide sequence