Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03186 and MPMX19_03187 are separated by 356 nucleotides MPMX19_03187 and MPMX19_03188 are separated by 46 nucleotides MPMX19_03188 and MPMX19_03189 are separated by 324 nucleotides
MPMX19_03186: MPMX19_03186 - hypothetical protein, at 481,271 to 482,917
_03186
MPMX19_03187: MPMX19_03187 - Magnesium-transporting ATPase, P-type 1, at 483,274 to 485,817
_03187
MPMX19_03188: MPMX19_03188 - hypothetical protein, at 485,864 to 486,037
_03188
MPMX19_03189: MPMX19_03189 - hypothetical protein, at 486,362 to 486,655
_03189
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.275 kb on - strand, within MPMX19_03186 at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 483.053 kb on + strand at 483.069 kb on + strand at 483.070 kb on - strand at 483.088 kb on + strand at 483.088 kb on + strand at 483.206 kb on + strand at 483.243 kb on + strand at 483.243 kb on + strand at 483.244 kb on - strand at 483.244 kb on - strand at 483.244 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.330 kb on + strand at 483.330 kb on + strand at 483.330 kb on + strand at 483.331 kb on - strand at 483.331 kb on - strand at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.070 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.253 kb on + strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 484.571 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.225 kb on - strand, within MPMX19_03187 at 485.341 kb on + strand, within MPMX19_03187 at 485.341 kb on + strand, within MPMX19_03187 at 485.341 kb on + strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.486 kb on - strand, within MPMX19_03187 at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.725 kb on + strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.726 kb on - strand at 485.751 kb on + strand at 485.752 kb on - strand at 485.752 kb on - strand at 485.752 kb on - strand at 485.755 kb on + strand at 485.755 kb on + strand at 485.755 kb on + strand at 485.755 kb on + strand at 485.756 kb on - strand at 485.756 kb on - strand at 485.756 kb on - strand at 485.756 kb on - strand at 485.756 kb on - strand at 486.016 kb on + strand, within MPMX19_03188 at 486.017 kb on - strand, within MPMX19_03188 at 486.062 kb on + strand at 486.063 kb on - strand at 486.063 kb on - strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.064 kb on + strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.065 kb on - strand at 486.184 kb on + strand at 486.185 kb on - strand at 486.185 kb on - strand at 486.209 kb on + strand at 486.209 kb on + strand at 486.210 kb on - strand at 486.219 kb on + strand at 486.219 kb on + strand at 486.219 kb on + strand at 486.220 kb on - strand at 486.279 kb on + strand at 486.280 kb on - strand at 486.280 kb on - strand at 486.280 kb on - strand at 486.280 kb on - strand at 486.302 kb on + strand at 486.302 kb on + strand at 486.302 kb on + strand at 486.302 kb on + strand at 486.303 kb on - strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.322 kb on + strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.323 kb on - strand at 486.345 kb on - strand at 486.427 kb on - strand, within MPMX19_03189 at 486.647 kb on + strand at 486.647 kb on + strand at 486.647 kb on + strand at 486.647 kb on + strand at 486.648 kb on - strand at 486.648 kb on - strand at 486.670 kb on + strand at 486.707 kb on + strand at 486.707 kb on + strand at 486.707 kb on + strand at 486.708 kb on - strand at 486.708 kb on - strand at 486.723 kb on - strand at 486.782 kb on + strand at 486.782 kb on + strand at 486.802 kb on + strand at 486.803 kb on - strand at 486.803 kb on - strand at 486.803 kb on - strand at 486.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 482,275 - MPMX19_03186 0.61 -1.2 482,841 + +0.2 482,841 + +1.1 482,841 + +0.5 482,841 + -0.9 482,841 + -0.5 482,842 - -1.5 482,842 - -1.5 482,842 - -1.6 482,842 - -0.0 482,842 - +1.7 483,053 + -1.0 483,069 + -2.0 483,070 - -0.1 483,088 + -0.8 483,088 + -0.9 483,206 + +0.7 483,243 + -2.3 483,243 + -1.8 483,244 - +0.2 483,244 - +0.2 483,244 - +0.5 483,254 - -0.3 483,254 - -0.2 483,254 - +0.5 483,254 - -0.7 483,254 - -1.3 483,254 - +0.3 483,330 + -1.2 483,330 + +1.3 483,330 + -0.5 483,331 - -0.0 483,331 - -0.1 484,070 + MPMX19_03187 0.31 -1.9 484,070 + MPMX19_03187 0.31 -0.5 484,070 + MPMX19_03187 0.31 -0.4 484,070 + MPMX19_03187 0.31 -0.7 484,070 + MPMX19_03187 0.31 -0.4 484,070 + MPMX19_03187 0.31 -2.3 484,070 + MPMX19_03187 0.31 +0.5 484,070 + MPMX19_03187 0.31 -0.5 484,070 + MPMX19_03187 0.31 +1.0 484,070 + MPMX19_03187 0.31 -1.2 484,070 + MPMX19_03187 0.31 +0.1 484,070 + MPMX19_03187 0.31 -2.3 484,070 + MPMX19_03187 0.31 +1.5 484,070 + MPMX19_03187 0.31 -1.8 484,070 + MPMX19_03187 0.31 +0.2 484,070 + MPMX19_03187 0.31 -0.3 484,070 + MPMX19_03187 0.31 -1.5 484,253 + MPMX19_03187 0.38 -0.6 484,253 + MPMX19_03187 0.38 -0.9 484,253 + MPMX19_03187 0.38 -1.7 484,253 + MPMX19_03187 0.38 +0.7 484,253 + MPMX19_03187 0.38 +0.2 484,253 + MPMX19_03187 0.38 -0.5 484,253 + MPMX19_03187 0.38 -1.2 484,253 + MPMX19_03187 0.38 -0.9 484,253 + MPMX19_03187 0.38 +0.0 484,253 + MPMX19_03187 0.38 -1.1 484,253 + MPMX19_03187 0.38 -0.8 484,253 + MPMX19_03187 0.38 -2.5 484,253 + MPMX19_03187 0.38 -1.2 484,253 + MPMX19_03187 0.38 +0.5 484,253 + MPMX19_03187 0.38 -2.1 484,253 + MPMX19_03187 0.38 -1.0 484,253 + MPMX19_03187 0.38 -1.5 484,253 + MPMX19_03187 0.38 -0.6 484,253 + MPMX19_03187 0.38 -1.3 484,253 + MPMX19_03187 0.38 -1.3 484,253 + MPMX19_03187 0.38 -0.5 484,253 + MPMX19_03187 0.38 -0.0 484,571 - MPMX19_03187 0.51 -1.3 484,571 - MPMX19_03187 0.51 -0.5 484,571 - MPMX19_03187 0.51 -0.5 484,571 - MPMX19_03187 0.51 -1.0 484,571 - MPMX19_03187 0.51 -1.8 484,571 - MPMX19_03187 0.51 -1.0 484,571 - MPMX19_03187 0.51 -0.9 485,225 - MPMX19_03187 0.77 -0.6 485,225 - MPMX19_03187 0.77 +0.2 485,225 - MPMX19_03187 0.77 +0.2 485,225 - MPMX19_03187 0.77 -0.8 485,225 - MPMX19_03187 0.77 -1.0 485,225 - MPMX19_03187 0.77 -0.2 485,341 + MPMX19_03187 0.81 +0.7 485,341 + MPMX19_03187 0.81 -1.8 485,341 + MPMX19_03187 0.81 +0.7 485,486 - MPMX19_03187 0.87 +0.7 485,486 - MPMX19_03187 0.87 -1.8 485,486 - MPMX19_03187 0.87 +0.2 485,486 - MPMX19_03187 0.87 -0.6 485,486 - MPMX19_03187 0.87 -1.5 485,725 + +0.7 485,725 + -0.0 485,725 + +0.9 485,725 + -1.3 485,725 + -0.3 485,725 + +0.3 485,725 + -0.5 485,725 + -0.5 485,725 + -0.0 485,725 + -0.5 485,725 + -0.0 485,725 + -0.8 485,725 + -1.3 485,725 + +2.5 485,725 + -0.4 485,725 + -1.5 485,725 + -0.2 485,726 - -0.3 485,726 - +0.7 485,726 - -0.5 485,726 - -0.3 485,726 - -0.0 485,726 - -0.0 485,726 - -0.2 485,726 - +0.2 485,726 - -0.5 485,751 + -0.1 485,752 - +0.8 485,752 - +0.0 485,752 - -0.0 485,755 + +0.8 485,755 + -1.0 485,755 + +1.5 485,755 + -1.3 485,756 - -1.0 485,756 - -0.7 485,756 - -1.6 485,756 - -0.5 485,756 - -0.7 486,016 + MPMX19_03188 0.87 +0.5 486,017 - MPMX19_03188 0.88 -1.3 486,062 + -0.1 486,063 - +0.2 486,063 - +0.5 486,064 + +0.1 486,064 + -2.5 486,064 + -1.7 486,064 + -0.3 486,064 + -0.6 486,064 + -1.0 486,065 - -0.2 486,065 - -1.2 486,065 - -0.4 486,065 - -1.4 486,065 - -1.2 486,065 - +0.4 486,065 - +0.2 486,065 - +1.1 486,065 - -1.4 486,065 - -0.6 486,065 - +0.1 486,065 - -0.4 486,065 - +0.2 486,065 - -0.4 486,184 + +1.1 486,185 - +0.5 486,185 - -1.3 486,209 + -1.0 486,209 + -0.0 486,210 - -0.5 486,219 + -1.3 486,219 + -1.5 486,219 + -0.5 486,220 - -0.6 486,279 + +1.9 486,280 - +1.1 486,280 - -0.3 486,280 - +0.2 486,280 - +0.3 486,302 + -0.5 486,302 + +0.5 486,302 + -0.8 486,302 + +1.3 486,303 - -0.5 486,322 + +0.3 486,322 + +0.5 486,322 + -2.0 486,322 + -0.0 486,322 + -0.5 486,323 - -0.0 486,323 - -0.8 486,323 - -0.5 486,323 - -0.1 486,323 - -0.1 486,345 - +0.3 486,427 - MPMX19_03189 0.22 +1.3 486,647 + -0.7 486,647 + -1.3 486,647 + -0.8 486,647 + -0.5 486,648 - -0.8 486,648 - -0.0 486,670 + -1.3 486,707 + +1.5 486,707 + -0.3 486,707 + +0.1 486,708 - -2.3 486,708 - -0.7 486,723 - +0.3 486,782 + -1.0 486,782 + -0.7 486,802 + -0.0 486,803 - -1.5 486,803 - -0.2 486,803 - -0.3 486,803 - +0.1
Or see this region's nucleotide sequence