Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03081 and MPMX19_03082 are separated by 87 nucleotides MPMX19_03082 and MPMX19_03083 are separated by 235 nucleotides MPMX19_03083 and MPMX19_03084 are separated by 92 nucleotides
MPMX19_03081: MPMX19_03081 - Protein FecR, at 350,140 to 351,195
_03081
MPMX19_03082: MPMX19_03082 - ECF RNA polymerase sigma factor SigE, at 351,283 to 351,807
_03082
MPMX19_03083: MPMX19_03083 - hypothetical protein, at 352,043 to 352,249
_03083
MPMX19_03084: MPMX19_03084 - Catalase-peroxidase, at 352,342 to 354,573
_03084
Position (kb) 352
353 Strain fitness (log2 ratio) -2
-1
0
1
2 at 351.214 kb on + strand at 351.214 kb on + strand at 351.215 kb on - strand at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.392 kb on + strand, within MPMX19_03082 at 351.393 kb on - strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.789 kb on + strand at 351.789 kb on + strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.939 kb on - strand at 351.953 kb on + strand at 351.972 kb on - strand at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 351,214 + +1.1 351,214 + +0.4 351,215 - -0.6 351,344 + MPMX19_03082 0.12 -2.1 351,344 + MPMX19_03082 0.12 -0.6 351,344 + MPMX19_03082 0.12 -0.3 351,344 + MPMX19_03082 0.12 -0.8 351,344 + MPMX19_03082 0.12 -0.6 351,344 + MPMX19_03082 0.12 +0.2 351,344 + MPMX19_03082 0.12 -0.2 351,345 - MPMX19_03082 0.12 +1.0 351,345 - MPMX19_03082 0.12 +1.3 351,392 + MPMX19_03082 0.21 -0.3 351,393 - MPMX19_03082 0.21 -1.8 351,413 + MPMX19_03082 0.25 +1.1 351,413 + MPMX19_03082 0.25 +0.3 351,413 + MPMX19_03082 0.25 -2.0 351,413 + MPMX19_03082 0.25 -0.9 351,413 + MPMX19_03082 0.25 -0.2 351,413 + MPMX19_03082 0.25 -2.1 351,413 + MPMX19_03082 0.25 +1.1 351,413 + MPMX19_03082 0.25 +0.4 351,413 + MPMX19_03082 0.25 -0.6 351,413 + MPMX19_03082 0.25 -0.8 351,413 + MPMX19_03082 0.25 -0.9 351,414 - MPMX19_03082 0.25 -0.7 351,414 - MPMX19_03082 0.25 -0.7 351,414 - MPMX19_03082 0.25 +1.2 351,414 - MPMX19_03082 0.25 -1.7 351,414 - MPMX19_03082 0.25 -1.6 351,414 - MPMX19_03082 0.25 -1.2 351,414 - MPMX19_03082 0.25 -0.4 351,614 + MPMX19_03082 0.63 -0.8 351,614 + MPMX19_03082 0.63 +0.3 351,614 + MPMX19_03082 0.63 -1.2 351,614 + MPMX19_03082 0.63 +1.1 351,614 + MPMX19_03082 0.63 -0.0 351,615 - MPMX19_03082 0.63 -1.9 351,615 - MPMX19_03082 0.63 -1.3 351,615 - MPMX19_03082 0.63 -0.6 351,615 - MPMX19_03082 0.63 -0.9 351,615 - MPMX19_03082 0.63 -0.0 351,615 - MPMX19_03082 0.63 +1.1 351,615 - MPMX19_03082 0.63 -2.0 351,615 - MPMX19_03082 0.63 +1.0 351,615 - MPMX19_03082 0.63 +0.3 351,789 + +0.8 351,789 + -0.6 351,790 - -0.0 351,790 - -1.2 351,790 - +0.1 351,790 - -1.3 351,790 - +0.4 351,936 + -1.2 351,936 + +0.2 351,936 + -0.0 351,936 + +1.1 351,936 + -1.6 351,936 + -0.9 351,936 + +0.1 351,939 - -1.2 351,953 + -1.0 351,972 - -0.5 352,167 + MPMX19_03083 0.60 +0.1 352,167 + MPMX19_03083 0.60 -0.4 352,167 + MPMX19_03083 0.60 -0.0 352,167 + MPMX19_03083 0.60 -1.5 352,168 - MPMX19_03083 0.60 -0.5 352,168 - MPMX19_03083 0.60 +0.7 352,168 - MPMX19_03083 0.60 -0.2 352,168 - MPMX19_03083 0.60 -1.2 352,168 - MPMX19_03083 0.60 -2.1 352,262 + -0.8 352,262 + -0.1 352,262 + +0.3 352,262 + +1.6 352,262 + -0.8 352,262 + +0.6 352,262 + -0.3 352,262 + +0.3 352,262 + -0.8 352,262 + +0.8 352,262 + -0.5 352,262 + -0.3 352,262 + -0.9 352,262 + -1.0 352,262 + +0.2 352,262 + -0.9 352,262 + +0.2 352,262 + +0.3 352,262 + +0.3 352,262 + +1.0 352,262 + +0.6 352,263 - -0.8 352,263 - -0.3 352,263 - -1.0 352,263 - -0.9 352,263 - +0.6 352,263 - -0.3 352,263 - -0.7 352,263 - -0.2 352,263 - -1.4 352,263 - +0.2 352,263 - -0.8 352,263 - -1.6 352,263 - +0.3 352,445 + +0.1 352,445 + -0.4 352,445 + +0.3 352,445 + -0.6 352,445 + +0.4 352,445 + -1.4 352,445 + +0.3 352,445 + -0.1 352,445 + +1.6 352,445 + +0.5 352,445 + -0.2 352,445 + -1.0 352,445 + +0.6 352,445 + -1.6 352,445 + +1.8 352,445 + -0.2 352,445 + +0.2 352,446 - +0.3 352,446 - -1.2 352,446 - +0.2 352,446 - +0.6 352,446 - +0.3 352,446 - +1.3 352,446 - -1.1 352,446 - -0.2 352,446 - -1.9 352,446 - +0.8 352,446 - -1.2 352,446 - -2.7 352,446 - -0.9 352,446 - +1.6 352,446 - -0.2 352,547 + +0.3 352,547 + -1.1 352,547 + -0.6 352,547 + +0.3 352,547 + +0.2 352,547 + +0.6 352,547 + -0.4 352,547 + +0.4 352,547 + -0.6 352,548 - -1.1 352,548 - +0.5 352,548 - -0.1 352,548 - -1.0 352,548 - -0.8 352,548 - -0.1 352,548 - +0.5 352,548 - -0.6 352,548 - -0.0 352,793 + MPMX19_03084 0.20 +0.8 352,793 + MPMX19_03084 0.20 -0.4 352,793 + MPMX19_03084 0.20 -1.2 352,793 + MPMX19_03084 0.20 +0.2 352,793 + MPMX19_03084 0.20 -0.0 352,793 + MPMX19_03084 0.20 +0.4 352,793 + MPMX19_03084 0.20 -1.6 352,793 + MPMX19_03084 0.20 -1.4 352,793 + MPMX19_03084 0.20 -1.6 352,793 + MPMX19_03084 0.20 +1.0 352,793 + MPMX19_03084 0.20 -2.3 352,793 + MPMX19_03084 0.20 -0.4 352,793 + MPMX19_03084 0.20 +0.4 352,793 + MPMX19_03084 0.20 +0.3 352,793 + MPMX19_03084 0.20 -1.2 352,793 + MPMX19_03084 0.20 -0.3 352,793 + MPMX19_03084 0.20 -0.0 352,793 + MPMX19_03084 0.20 -0.2 352,794 - MPMX19_03084 0.20 -1.2 352,794 - MPMX19_03084 0.20 -0.4 352,794 - MPMX19_03084 0.20 -0.9 352,794 - MPMX19_03084 0.20 +0.2 352,794 - MPMX19_03084 0.20 +1.2 352,794 - MPMX19_03084 0.20 -0.3
Or see this region's nucleotide sequence