Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02837 and MPMX19_02838 overlap by 4 nucleotides MPMX19_02838 and MPMX19_02839 are separated by 10 nucleotides MPMX19_02839 and MPMX19_02840 are separated by 59 nucleotides MPMX19_02840 and MPMX19_02841 are separated by 11 nucleotides
MPMX19_02837: MPMX19_02837 - Malonyl-S-ACP:biotin-protein carboxyltransferase MADC, at 78,220 to 79,107
_02837
MPMX19_02838: MPMX19_02838 - Malonate decarboxylase acyl carrier protein, at 79,104 to 79,424
_02838
MPMX19_02839: MPMX19_02839 - Acetyl-S-ACP:malonate ACP transferase, at 79,435 to 81,090
_02839
MPMX19_02840: MPMX19_02840 - hypothetical protein, at 81,150 to 81,914
_02840
MPMX19_02841: MPMX19_02841 - hypothetical protein, at 81,926 to 82,333
_02841
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 78.497 kb on + strand, within MPMX19_02837 at 78.498 kb on - strand, within MPMX19_02837 at 78.498 kb on - strand, within MPMX19_02837 at 78.498 kb on - strand, within MPMX19_02837 at 79.094 kb on + strand at 79.095 kb on - strand at 79.095 kb on - strand at 79.097 kb on + strand at 79.097 kb on + strand at 79.097 kb on + strand at 79.097 kb on + strand at 79.097 kb on + strand at 79.097 kb on + strand at 79.097 kb on + strand at 79.097 kb on + strand at 79.098 kb on - strand at 79.098 kb on - strand at 79.402 kb on + strand at 79.430 kb on - strand at 79.466 kb on + strand at 79.466 kb on + strand at 79.466 kb on + strand at 79.467 kb on - strand at 79.467 kb on - strand at 79.632 kb on - strand, within MPMX19_02839 at 79.736 kb on + strand, within MPMX19_02839 at 79.736 kb on + strand, within MPMX19_02839 at 79.736 kb on + strand, within MPMX19_02839 at 79.736 kb on + strand, within MPMX19_02839 at 79.736 kb on + strand, within MPMX19_02839 at 79.736 kb on + strand, within MPMX19_02839 at 79.737 kb on - strand, within MPMX19_02839 at 79.737 kb on - strand, within MPMX19_02839 at 79.737 kb on - strand, within MPMX19_02839 at 79.737 kb on - strand, within MPMX19_02839 at 79.737 kb on - strand, within MPMX19_02839 at 79.737 kb on - strand, within MPMX19_02839 at 79.753 kb on + strand, within MPMX19_02839 at 79.753 kb on + strand, within MPMX19_02839 at 79.754 kb on - strand, within MPMX19_02839 at 79.818 kb on + strand, within MPMX19_02839 at 79.818 kb on + strand, within MPMX19_02839 at 79.818 kb on + strand, within MPMX19_02839 at 79.818 kb on + strand, within MPMX19_02839 at 79.818 kb on + strand, within MPMX19_02839 at 79.818 kb on + strand, within MPMX19_02839 at 79.818 kb on + strand, within MPMX19_02839 at 79.819 kb on - strand, within MPMX19_02839 at 79.819 kb on - strand, within MPMX19_02839 at 79.819 kb on - strand, within MPMX19_02839 at 79.819 kb on - strand, within MPMX19_02839 at 79.819 kb on - strand, within MPMX19_02839 at 80.043 kb on + strand, within MPMX19_02839 at 80.060 kb on + strand, within MPMX19_02839 at 80.060 kb on + strand, within MPMX19_02839 at 80.060 kb on + strand, within MPMX19_02839 at 80.060 kb on + strand, within MPMX19_02839 at 80.061 kb on - strand, within MPMX19_02839 at 80.061 kb on - strand, within MPMX19_02839 at 80.061 kb on - strand, within MPMX19_02839 at 80.061 kb on - strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.145 kb on + strand, within MPMX19_02839 at 80.146 kb on - strand, within MPMX19_02839 at 80.146 kb on - strand, within MPMX19_02839 at 80.146 kb on - strand, within MPMX19_02839 at 80.146 kb on - strand, within MPMX19_02839 at 80.146 kb on - strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.147 kb on + strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.148 kb on - strand, within MPMX19_02839 at 80.285 kb on + strand, within MPMX19_02839 at 80.285 kb on + strand, within MPMX19_02839 at 80.286 kb on - strand, within MPMX19_02839 at 80.286 kb on - strand, within MPMX19_02839 at 80.354 kb on + strand, within MPMX19_02839 at 80.354 kb on + strand, within MPMX19_02839 at 80.354 kb on + strand, within MPMX19_02839 at 80.363 kb on + strand, within MPMX19_02839 at 80.363 kb on + strand, within MPMX19_02839 at 80.363 kb on + strand, within MPMX19_02839 at 80.363 kb on + strand, within MPMX19_02839 at 80.364 kb on - strand, within MPMX19_02839 at 80.364 kb on - strand, within MPMX19_02839 at 80.364 kb on - strand, within MPMX19_02839 at 80.364 kb on - strand, within MPMX19_02839 at 80.364 kb on - strand, within MPMX19_02839 at 80.364 kb on - strand, within MPMX19_02839 at 80.364 kb on - strand, within MPMX19_02839 at 80.445 kb on + strand, within MPMX19_02839 at 80.445 kb on + strand, within MPMX19_02839 at 80.445 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.447 kb on + strand, within MPMX19_02839 at 80.448 kb on - strand, within MPMX19_02839 at 80.448 kb on - strand, within MPMX19_02839 at 80.448 kb on - strand, within MPMX19_02839 at 80.448 kb on - strand, within MPMX19_02839 at 80.448 kb on - strand, within MPMX19_02839 at 80.448 kb on - strand, within MPMX19_02839 at 80.448 kb on - strand, within MPMX19_02839 at 80.609 kb on + strand, within MPMX19_02839 at 80.609 kb on + strand, within MPMX19_02839 at 80.609 kb on + strand, within MPMX19_02839 at 80.609 kb on + strand, within MPMX19_02839 at 80.609 kb on + strand, within MPMX19_02839 at 80.609 kb on + strand, within MPMX19_02839 at 80.610 kb on - strand, within MPMX19_02839 at 80.610 kb on - strand, within MPMX19_02839 at 80.610 kb on - strand, within MPMX19_02839 at 80.610 kb on - strand, within MPMX19_02839 at 80.610 kb on - strand, within MPMX19_02839 at 80.610 kb on - strand, within MPMX19_02839 at 80.678 kb on + strand, within MPMX19_02839 at 80.679 kb on - strand, within MPMX19_02839 at 80.679 kb on - strand, within MPMX19_02839 at 80.679 kb on - strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.699 kb on + strand, within MPMX19_02839 at 80.700 kb on - strand, within MPMX19_02839 at 80.700 kb on - strand, within MPMX19_02839 at 80.700 kb on - strand, within MPMX19_02839 at 80.700 kb on - strand, within MPMX19_02839 at 80.700 kb on - strand, within MPMX19_02839 at 80.700 kb on - strand, within MPMX19_02839 at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.241 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.751 kb on + strand, within MPMX19_02840 at 81.751 kb on + strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.927 kb on + strand at 81.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 78,497 + MPMX19_02837 0.31 +0.6 78,498 - MPMX19_02837 0.31 -0.0 78,498 - MPMX19_02837 0.31 -0.6 78,498 - MPMX19_02837 0.31 -0.2 79,094 + +1.0 79,095 - -1.2 79,095 - -2.2 79,097 + +1.1 79,097 + -0.3 79,097 + -0.8 79,097 + +1.0 79,097 + +1.0 79,097 + -0.0 79,097 + +0.1 79,097 + -0.9 79,098 - -0.1 79,098 - +0.4 79,402 + -0.0 79,430 - +1.2 79,466 + +1.0 79,466 + -0.2 79,466 + +1.0 79,467 - -1.2 79,467 - -0.1 79,632 - MPMX19_02839 0.12 +0.4 79,736 + MPMX19_02839 0.18 -0.1 79,736 + MPMX19_02839 0.18 -1.8 79,736 + MPMX19_02839 0.18 -0.8 79,736 + MPMX19_02839 0.18 -0.1 79,736 + MPMX19_02839 0.18 -0.3 79,736 + MPMX19_02839 0.18 +0.4 79,737 - MPMX19_02839 0.18 +0.0 79,737 - MPMX19_02839 0.18 -0.7 79,737 - MPMX19_02839 0.18 +1.0 79,737 - MPMX19_02839 0.18 -0.2 79,737 - MPMX19_02839 0.18 -0.8 79,737 - MPMX19_02839 0.18 -1.2 79,753 + MPMX19_02839 0.19 +0.6 79,753 + MPMX19_02839 0.19 -1.0 79,754 - MPMX19_02839 0.19 -0.1 79,818 + MPMX19_02839 0.23 +0.2 79,818 + MPMX19_02839 0.23 +1.6 79,818 + MPMX19_02839 0.23 -0.2 79,818 + MPMX19_02839 0.23 +1.0 79,818 + MPMX19_02839 0.23 -0.9 79,818 + MPMX19_02839 0.23 +0.7 79,818 + MPMX19_02839 0.23 +1.1 79,819 - MPMX19_02839 0.23 -1.2 79,819 - MPMX19_02839 0.23 +0.1 79,819 - MPMX19_02839 0.23 +1.1 79,819 - MPMX19_02839 0.23 +1.0 79,819 - MPMX19_02839 0.23 -0.3 80,043 + MPMX19_02839 0.37 -0.9 80,060 + MPMX19_02839 0.38 -0.4 80,060 + MPMX19_02839 0.38 +1.2 80,060 + MPMX19_02839 0.38 -0.2 80,060 + MPMX19_02839 0.38 +0.7 80,061 - MPMX19_02839 0.38 -1.0 80,061 - MPMX19_02839 0.38 +1.2 80,061 - MPMX19_02839 0.38 -1.0 80,061 - MPMX19_02839 0.38 -0.0 80,145 + MPMX19_02839 0.43 -0.4 80,145 + MPMX19_02839 0.43 +0.2 80,145 + MPMX19_02839 0.43 +0.4 80,145 + MPMX19_02839 0.43 +1.4 80,145 + MPMX19_02839 0.43 +0.2 80,145 + MPMX19_02839 0.43 +1.2 80,145 + MPMX19_02839 0.43 -1.2 80,145 + MPMX19_02839 0.43 -0.8 80,146 - MPMX19_02839 0.43 +0.6 80,146 - MPMX19_02839 0.43 -0.8 80,146 - MPMX19_02839 0.43 -0.1 80,146 - MPMX19_02839 0.43 +0.2 80,146 - MPMX19_02839 0.43 -1.0 80,147 + MPMX19_02839 0.43 +0.6 80,147 + MPMX19_02839 0.43 -1.3 80,147 + MPMX19_02839 0.43 +0.0 80,147 + MPMX19_02839 0.43 +0.6 80,147 + MPMX19_02839 0.43 +0.9 80,147 + MPMX19_02839 0.43 -0.4 80,147 + MPMX19_02839 0.43 +0.7 80,147 + MPMX19_02839 0.43 -0.3 80,147 + MPMX19_02839 0.43 +0.2 80,147 + MPMX19_02839 0.43 -1.4 80,148 - MPMX19_02839 0.43 +0.2 80,148 - MPMX19_02839 0.43 -0.0 80,148 - MPMX19_02839 0.43 -0.6 80,148 - MPMX19_02839 0.43 +0.3 80,148 - MPMX19_02839 0.43 +0.6 80,148 - MPMX19_02839 0.43 -0.2 80,148 - MPMX19_02839 0.43 +0.9 80,148 - MPMX19_02839 0.43 +0.3 80,148 - MPMX19_02839 0.43 -1.6 80,148 - MPMX19_02839 0.43 +0.7 80,148 - MPMX19_02839 0.43 +0.6 80,148 - MPMX19_02839 0.43 +1.0 80,148 - MPMX19_02839 0.43 +0.0 80,285 + MPMX19_02839 0.51 +0.1 80,285 + MPMX19_02839 0.51 +0.5 80,286 - MPMX19_02839 0.51 +0.0 80,286 - MPMX19_02839 0.51 -1.2 80,354 + MPMX19_02839 0.55 +0.3 80,354 + MPMX19_02839 0.55 -1.0 80,354 + MPMX19_02839 0.55 +0.2 80,363 + MPMX19_02839 0.56 +0.2 80,363 + MPMX19_02839 0.56 +0.7 80,363 + MPMX19_02839 0.56 +0.8 80,363 + MPMX19_02839 0.56 +1.0 80,364 - MPMX19_02839 0.56 +0.4 80,364 - MPMX19_02839 0.56 +0.8 80,364 - MPMX19_02839 0.56 -0.3 80,364 - MPMX19_02839 0.56 +1.0 80,364 - MPMX19_02839 0.56 +0.4 80,364 - MPMX19_02839 0.56 -0.7 80,364 - MPMX19_02839 0.56 -0.2 80,445 + MPMX19_02839 0.61 -2.1 80,445 + MPMX19_02839 0.61 -0.6 80,445 + MPMX19_02839 0.61 +1.3 80,447 + MPMX19_02839 0.61 +2.1 80,447 + MPMX19_02839 0.61 -0.2 80,447 + MPMX19_02839 0.61 -0.1 80,447 + MPMX19_02839 0.61 -2.3 80,447 + MPMX19_02839 0.61 +0.1 80,447 + MPMX19_02839 0.61 -0.4 80,447 + MPMX19_02839 0.61 -1.0 80,447 + MPMX19_02839 0.61 -0.0 80,447 + MPMX19_02839 0.61 -1.0 80,448 - MPMX19_02839 0.61 +0.5 80,448 - MPMX19_02839 0.61 -0.7 80,448 - MPMX19_02839 0.61 +0.3 80,448 - MPMX19_02839 0.61 -1.0 80,448 - MPMX19_02839 0.61 -1.0 80,448 - MPMX19_02839 0.61 -0.5 80,448 - MPMX19_02839 0.61 -0.0 80,609 + MPMX19_02839 0.71 +0.8 80,609 + MPMX19_02839 0.71 -1.1 80,609 + MPMX19_02839 0.71 +1.2 80,609 + MPMX19_02839 0.71 +1.6 80,609 + MPMX19_02839 0.71 +0.3 80,609 + MPMX19_02839 0.71 -0.1 80,610 - MPMX19_02839 0.71 -1.2 80,610 - MPMX19_02839 0.71 -0.8 80,610 - MPMX19_02839 0.71 -0.1 80,610 - MPMX19_02839 0.71 -1.0 80,610 - MPMX19_02839 0.71 +0.1 80,610 - MPMX19_02839 0.71 +0.8 80,678 + MPMX19_02839 0.75 -0.9 80,679 - MPMX19_02839 0.75 +0.8 80,679 - MPMX19_02839 0.75 -0.9 80,679 - MPMX19_02839 0.75 -1.9 80,699 + MPMX19_02839 0.76 -0.2 80,699 + MPMX19_02839 0.76 +1.1 80,699 + MPMX19_02839 0.76 -1.8 80,699 + MPMX19_02839 0.76 -0.3 80,699 + MPMX19_02839 0.76 -0.5 80,699 + MPMX19_02839 0.76 -0.0 80,699 + MPMX19_02839 0.76 +0.7 80,699 + MPMX19_02839 0.76 +0.7 80,699 + MPMX19_02839 0.76 +0.1 80,699 + MPMX19_02839 0.76 -1.6 80,700 - MPMX19_02839 0.76 +0.4 80,700 - MPMX19_02839 0.76 -0.5 80,700 - MPMX19_02839 0.76 -0.0 80,700 - MPMX19_02839 0.76 -0.5 80,700 - MPMX19_02839 0.76 +0.2 80,700 - MPMX19_02839 0.76 +0.8 81,025 + +0.6 81,025 + +0.1 81,025 + -0.0 81,025 + +1.0 81,025 + -0.8 81,025 + -0.0 81,025 + +2.2 81,025 + -1.2 81,025 + +0.3 81,026 - -1.0 81,026 - +1.1 81,026 - -1.1 81,026 - -0.9 81,026 - +0.6 81,026 - -1.2 81,026 - +0.7 81,026 - -1.7 81,026 - -0.2 81,026 - +0.2 81,026 - -0.6 81,026 - -0.4 81,026 - -0.2 81,026 - +0.2 81,026 - +0.6 81,026 - +0.6 81,241 + MPMX19_02840 0.12 -0.2 81,472 + MPMX19_02840 0.42 -0.5 81,472 + MPMX19_02840 0.42 -0.6 81,472 + MPMX19_02840 0.42 -0.7 81,472 + MPMX19_02840 0.42 -1.3 81,472 + MPMX19_02840 0.42 -0.7 81,472 + MPMX19_02840 0.42 -1.6 81,472 + MPMX19_02840 0.42 -0.2 81,472 + MPMX19_02840 0.42 -1.4 81,472 + MPMX19_02840 0.42 -0.3 81,472 + MPMX19_02840 0.42 +0.2 81,472 + MPMX19_02840 0.42 -0.9 81,472 + MPMX19_02840 0.42 -0.8 81,472 + MPMX19_02840 0.42 -0.1 81,472 + MPMX19_02840 0.42 +0.8 81,472 + MPMX19_02840 0.42 -1.0 81,472 + MPMX19_02840 0.42 +0.1 81,473 - MPMX19_02840 0.42 -0.8 81,473 - MPMX19_02840 0.42 -1.6 81,473 - MPMX19_02840 0.42 +0.0 81,473 - MPMX19_02840 0.42 +0.2 81,473 - MPMX19_02840 0.42 -0.4 81,473 - MPMX19_02840 0.42 +0.1 81,473 - MPMX19_02840 0.42 +0.1 81,473 - MPMX19_02840 0.42 -0.1 81,473 - MPMX19_02840 0.42 -0.6 81,473 - MPMX19_02840 0.42 +1.4 81,473 - MPMX19_02840 0.42 -2.2 81,521 - MPMX19_02840 0.48 -0.2 81,521 - MPMX19_02840 0.48 +1.0 81,521 - MPMX19_02840 0.48 -0.8 81,521 - MPMX19_02840 0.48 -0.7 81,751 + MPMX19_02840 0.79 -0.0 81,751 + MPMX19_02840 0.79 +1.8 81,752 - MPMX19_02840 0.79 -2.5 81,752 - MPMX19_02840 0.79 -2.2 81,752 - MPMX19_02840 0.79 -1.4 81,927 + +0.1 81,928 - +0.2
Or see this region's nucleotide sequence