Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00849 and MPMX19_00850 are separated by 362 nucleotides MPMX19_00850 and MPMX19_00851 are separated by 294 nucleotides MPMX19_00851 and MPMX19_00852 are separated by 4 nucleotides MPMX19_00852 and MPMX19_00853 overlap by 4 nucleotides
MPMX19_00849: MPMX19_00849 - hypothetical protein, at 880,872 to 881,894
_00849
MPMX19_00850: MPMX19_00850 - hypothetical protein, at 882,257 to 882,385
_00850
MPMX19_00851: MPMX19_00851 - hypothetical protein, at 882,680 to 883,387
_00851
MPMX19_00852: MPMX19_00852 - hypothetical protein, at 883,392 to 884,246
_00852
MPMX19_00853: MPMX19_00853 - hypothetical protein, at 884,243 to 884,974
_00853
Position (kb) 882
883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 881.737 kb on + strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.738 kb on - strand, within MPMX19_00849 at 881.982 kb on + strand at 881.982 kb on + strand at 881.982 kb on + strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.983 kb on - strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.989 kb on + strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.990 kb on - strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.996 kb on + strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 881.997 kb on - strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.183 kb on + strand at 882.184 kb on - strand at 882.184 kb on - strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.230 kb on + strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.231 kb on - strand at 882.489 kb on - strand at 882.498 kb on + strand at 882.498 kb on + strand at 882.498 kb on + strand at 882.498 kb on + strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.499 kb on - strand at 882.512 kb on + strand at 882.513 kb on - strand at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.851 kb on + strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.852 kb on - strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.878 kb on + strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 882.879 kb on - strand, within MPMX19_00851 at 883.094 kb on + strand, within MPMX19_00851 at 883.094 kb on + strand, within MPMX19_00851 at 883.094 kb on + strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.095 kb on - strand, within MPMX19_00851 at 883.515 kb on - strand, within MPMX19_00852 at 884.122 kb on + strand, within MPMX19_00852 at 884.122 kb on + strand, within MPMX19_00852 at 884.122 kb on + strand, within MPMX19_00852 at 884.123 kb on - strand, within MPMX19_00852 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.344 kb on + strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.345 kb on - strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.369 kb on + strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853 at 884.370 kb on - strand, within MPMX19_00853
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 881,737 + MPMX19_00849 0.85 +0.3 881,738 - MPMX19_00849 0.85 -1.1 881,738 - MPMX19_00849 0.85 -0.7 881,738 - MPMX19_00849 0.85 +0.5 881,738 - MPMX19_00849 0.85 -0.3 881,982 + -0.7 881,982 + -1.5 881,982 + -1.1 881,983 - -1.7 881,983 - -1.8 881,983 - +0.2 881,983 - -0.1 881,983 - +0.1 881,989 + +0.9 881,989 + -1.1 881,989 + -0.1 881,989 + +0.5 881,989 + -0.1 881,989 + -0.5 881,989 + -1.5 881,989 + +1.5 881,989 + +0.9 881,989 + +0.5 881,989 + +2.0 881,990 - -0.1 881,990 - -2.1 881,990 - -0.7 881,990 - +0.1 881,990 - -1.3 881,990 - -1.4 881,990 - -2.1 881,990 - -0.8 881,990 - -0.5 881,990 - +1.6 881,990 - -2.2 881,990 - +1.0 881,990 - +2.3 881,990 - -0.3 881,990 - +1.3 881,990 - -0.8 881,990 - -0.6 881,990 - -0.5 881,990 - -1.0 881,990 - -0.4 881,990 - -0.6 881,990 - +1.1 881,996 + -0.7 881,996 + -1.2 881,996 + +0.3 881,996 + -1.5 881,996 + -1.0 881,996 + +0.2 881,996 + +0.2 881,996 + -1.1 881,996 + +0.9 881,996 + +0.2 881,997 - +0.5 881,997 - -1.8 881,997 - +0.3 881,997 - +0.2 881,997 - -0.2 881,997 - +1.4 881,997 - +0.8 881,997 - +0.0 881,997 - -0.8 881,997 - -1.0 881,997 - -0.8 881,997 - +0.3 882,183 + -0.5 882,183 + -0.7 882,183 + -1.5 882,183 + -1.1 882,183 + -3.3 882,183 + -0.2 882,183 + +0.1 882,184 - +0.2 882,184 - -2.6 882,230 + -0.8 882,230 + -2.8 882,230 + -0.8 882,230 + -1.2 882,230 + -1.0 882,230 + +0.6 882,230 + -1.3 882,230 + -0.8 882,230 + -0.5 882,230 + +0.2 882,230 + -1.8 882,230 + -0.0 882,230 + -0.6 882,230 + -0.5 882,230 + -1.3 882,230 + +0.3 882,230 + +0.8 882,231 - -1.4 882,231 - -1.1 882,231 - -0.2 882,231 - -0.4 882,231 - -1.2 882,231 - -1.5 882,231 - -0.8 882,231 - -1.5 882,231 - +0.5 882,231 - -0.0 882,231 - -0.5 882,231 - +0.1 882,231 - -0.2 882,231 - -0.6 882,489 - +0.3 882,498 + -2.1 882,498 + -0.0 882,498 + +0.2 882,498 + +0.7 882,499 - +0.2 882,499 - +0.3 882,499 - +0.5 882,499 - +0.6 882,499 - +0.6 882,499 - +0.4 882,499 - -0.0 882,512 + -2.0 882,513 - +0.3 882,851 + MPMX19_00851 0.24 -1.2 882,851 + MPMX19_00851 0.24 -0.8 882,851 + MPMX19_00851 0.24 +0.5 882,851 + MPMX19_00851 0.24 -0.2 882,851 + MPMX19_00851 0.24 +0.2 882,851 + MPMX19_00851 0.24 -1.7 882,851 + MPMX19_00851 0.24 +0.0 882,851 + MPMX19_00851 0.24 -0.2 882,851 + MPMX19_00851 0.24 -1.3 882,851 + MPMX19_00851 0.24 +0.9 882,851 + MPMX19_00851 0.24 -1.8 882,851 + MPMX19_00851 0.24 +0.0 882,851 + MPMX19_00851 0.24 -1.1 882,851 + MPMX19_00851 0.24 +0.6 882,851 + MPMX19_00851 0.24 +0.6 882,852 - MPMX19_00851 0.24 +0.4 882,852 - MPMX19_00851 0.24 -0.4 882,852 - MPMX19_00851 0.24 -0.3 882,852 - MPMX19_00851 0.24 -0.3 882,852 - MPMX19_00851 0.24 -0.2 882,852 - MPMX19_00851 0.24 +0.8 882,878 + MPMX19_00851 0.28 +0.2 882,878 + MPMX19_00851 0.28 +0.2 882,878 + MPMX19_00851 0.28 -0.7 882,878 + MPMX19_00851 0.28 -0.7 882,878 + MPMX19_00851 0.28 +0.0 882,878 + MPMX19_00851 0.28 -1.3 882,878 + MPMX19_00851 0.28 +0.5 882,878 + MPMX19_00851 0.28 +0.9 882,878 + MPMX19_00851 0.28 +1.8 882,878 + MPMX19_00851 0.28 -2.0 882,879 - MPMX19_00851 0.28 -1.1 882,879 - MPMX19_00851 0.28 +0.2 882,879 - MPMX19_00851 0.28 -1.0 882,879 - MPMX19_00851 0.28 +0.7 882,879 - MPMX19_00851 0.28 -0.1 882,879 - MPMX19_00851 0.28 -0.7 882,879 - MPMX19_00851 0.28 -0.7 882,879 - MPMX19_00851 0.28 -0.6 882,879 - MPMX19_00851 0.28 -1.1 882,879 - MPMX19_00851 0.28 +0.1 883,094 + MPMX19_00851 0.58 -0.6 883,094 + MPMX19_00851 0.58 -0.3 883,094 + MPMX19_00851 0.58 -0.8 883,095 - MPMX19_00851 0.59 +0.2 883,095 - MPMX19_00851 0.59 +0.2 883,095 - MPMX19_00851 0.59 +0.4 883,095 - MPMX19_00851 0.59 -0.7 883,095 - MPMX19_00851 0.59 -2.0 883,095 - MPMX19_00851 0.59 +1.5 883,515 - MPMX19_00852 0.14 +1.1 884,122 + MPMX19_00852 0.85 +1.3 884,122 + MPMX19_00852 0.85 -0.1 884,122 + MPMX19_00852 0.85 +0.1 884,123 - MPMX19_00852 0.85 +0.8 884,344 + MPMX19_00853 0.14 -0.4 884,344 + MPMX19_00853 0.14 -0.5 884,344 + MPMX19_00853 0.14 +0.2 884,344 + MPMX19_00853 0.14 -0.2 884,344 + MPMX19_00853 0.14 +0.6 884,344 + MPMX19_00853 0.14 +0.7 884,344 + MPMX19_00853 0.14 +0.3 884,344 + MPMX19_00853 0.14 +0.1 884,344 + MPMX19_00853 0.14 -0.7 884,344 + MPMX19_00853 0.14 -0.1 884,344 + MPMX19_00853 0.14 -0.3 884,344 + MPMX19_00853 0.14 -0.6 884,344 + MPMX19_00853 0.14 -0.2 884,344 + MPMX19_00853 0.14 -1.6 884,344 + MPMX19_00853 0.14 +0.3 884,344 + MPMX19_00853 0.14 -1.3 884,344 + MPMX19_00853 0.14 +0.3 884,344 + MPMX19_00853 0.14 +0.0 884,345 - MPMX19_00853 0.14 +1.4 884,345 - MPMX19_00853 0.14 -0.2 884,345 - MPMX19_00853 0.14 +0.1 884,345 - MPMX19_00853 0.14 -0.5 884,345 - MPMX19_00853 0.14 -1.2 884,345 - MPMX19_00853 0.14 -0.7 884,345 - MPMX19_00853 0.14 -0.8 884,345 - MPMX19_00853 0.14 +0.3 884,345 - MPMX19_00853 0.14 -1.0 884,345 - MPMX19_00853 0.14 -0.5 884,345 - MPMX19_00853 0.14 +0.0 884,345 - MPMX19_00853 0.14 +0.4 884,345 - MPMX19_00853 0.14 -0.2 884,345 - MPMX19_00853 0.14 +0.4 884,345 - MPMX19_00853 0.14 +0.7 884,345 - MPMX19_00853 0.14 +0.1 884,345 - MPMX19_00853 0.14 -0.7 884,345 - MPMX19_00853 0.14 -0.5 884,345 - MPMX19_00853 0.14 +0.3 884,345 - MPMX19_00853 0.14 -2.6 884,345 - MPMX19_00853 0.14 +0.6 884,345 - MPMX19_00853 0.14 -1.5 884,345 - MPMX19_00853 0.14 +1.2 884,345 - MPMX19_00853 0.14 +0.5 884,345 - MPMX19_00853 0.14 +0.6 884,345 - MPMX19_00853 0.14 -1.1 884,345 - MPMX19_00853 0.14 +0.1 884,369 + MPMX19_00853 0.17 +0.1 884,369 + MPMX19_00853 0.17 -0.8 884,369 + MPMX19_00853 0.17 -0.2 884,369 + MPMX19_00853 0.17 -0.6 884,369 + MPMX19_00853 0.17 -1.3 884,369 + MPMX19_00853 0.17 -0.8 884,369 + MPMX19_00853 0.17 +1.4 884,369 + MPMX19_00853 0.17 +0.4 884,369 + MPMX19_00853 0.17 +0.5 884,369 + MPMX19_00853 0.17 -1.0 884,369 + MPMX19_00853 0.17 -0.2 884,370 - MPMX19_00853 0.17 +0.2 884,370 - MPMX19_00853 0.17 +0.1 884,370 - MPMX19_00853 0.17 +0.2 884,370 - MPMX19_00853 0.17 -1.1 884,370 - MPMX19_00853 0.17 -0.1 884,370 - MPMX19_00853 0.17 +0.4 884,370 - MPMX19_00853 0.17 -0.1 884,370 - MPMX19_00853 0.17 +1.1 884,370 - MPMX19_00853 0.17 +0.1
Or see this region's nucleotide sequence