Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00737 and MPMX19_00738 are separated by 132 nucleotides MPMX19_00738 and MPMX19_00739 are separated by 168 nucleotides MPMX19_00739 and MPMX19_00740 are separated by 190 nucleotides MPMX19_00740 and MPMX19_00741 are separated by 82 nucleotides
MPMX19_00737: MPMX19_00737 - Outer membrane protein assembly factor BamE, at 758,525 to 759,019
_00737
MPMX19_00738: MPMX19_00738 - hypothetical protein, at 759,152 to 759,745
_00738
MPMX19_00739: MPMX19_00739 - hypothetical protein, at 759,914 to 760,501
_00739
MPMX19_00740: MPMX19_00740 - 50S ribosomal protein L32, at 760,692 to 760,880
_00740
MPMX19_00741: MPMX19_00741 - Phosphate acyltransferase, at 760,963 to 762,015
_00741
Position (kb) 759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 759.032 kb on - strand at 759.032 kb on - strand at 759.032 kb on - strand at 759.032 kb on - strand at 759.032 kb on - strand at 759.032 kb on - strand at 759.032 kb on - strand at 759.032 kb on - strand at 759.166 kb on + strand at 759.166 kb on + strand at 759.167 kb on - strand at 759.167 kb on - strand at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.299 kb on + strand, within MPMX19_00738 at 759.300 kb on - strand, within MPMX19_00738 at 759.300 kb on - strand, within MPMX19_00738 at 759.300 kb on - strand, within MPMX19_00738 at 759.300 kb on - strand, within MPMX19_00738 at 759.300 kb on - strand, within MPMX19_00738 at 759.300 kb on - strand, within MPMX19_00738 at 759.300 kb on - strand, within MPMX19_00738 at 759.425 kb on + strand, within MPMX19_00738 at 759.425 kb on + strand, within MPMX19_00738 at 759.425 kb on + strand, within MPMX19_00738 at 759.426 kb on - strand, within MPMX19_00738 at 759.426 kb on - strand, within MPMX19_00738 at 759.542 kb on + strand, within MPMX19_00738 at 759.542 kb on + strand, within MPMX19_00738 at 759.542 kb on + strand, within MPMX19_00738 at 759.542 kb on + strand, within MPMX19_00738 at 759.542 kb on + strand, within MPMX19_00738 at 759.542 kb on + strand, within MPMX19_00738 at 759.543 kb on - strand, within MPMX19_00738 at 759.543 kb on - strand, within MPMX19_00738 at 759.543 kb on - strand, within MPMX19_00738 at 759.543 kb on - strand, within MPMX19_00738 at 759.543 kb on - strand, within MPMX19_00738 at 759.605 kb on + strand, within MPMX19_00738 at 759.605 kb on + strand, within MPMX19_00738 at 759.605 kb on + strand, within MPMX19_00738 at 759.605 kb on + strand, within MPMX19_00738 at 759.605 kb on + strand, within MPMX19_00738 at 759.606 kb on - strand, within MPMX19_00738 at 759.606 kb on - strand, within MPMX19_00738 at 759.606 kb on - strand, within MPMX19_00738 at 759.606 kb on - strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.656 kb on + strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.657 kb on - strand, within MPMX19_00738 at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.755 kb on + strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.756 kb on - strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.757 kb on + strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.758 kb on - strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.759 kb on + strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.760 kb on - strand at 759.779 kb on + strand at 759.780 kb on - strand at 759.780 kb on - strand at 759.780 kb on - strand at 759.780 kb on - strand at 760.398 kb on - strand, within MPMX19_00739 at 760.532 kb on + strand at 760.532 kb on + strand at 760.532 kb on + strand at 760.532 kb on + strand at 760.532 kb on + strand at 760.532 kb on + strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.533 kb on - strand at 760.534 kb on + strand at 760.534 kb on + strand at 760.535 kb on - strand at 760.535 kb on - strand at 760.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 759,032 - +0.9 759,032 - -0.2 759,032 - -1.2 759,032 - +1.8 759,032 - -0.7 759,032 - -3.0 759,032 - -0.8 759,032 - -0.7 759,166 + -1.1 759,166 + -0.2 759,167 - -0.8 759,167 - -1.4 759,299 + MPMX19_00738 0.25 -0.8 759,299 + MPMX19_00738 0.25 +0.4 759,299 + MPMX19_00738 0.25 -0.6 759,299 + MPMX19_00738 0.25 -1.7 759,299 + MPMX19_00738 0.25 +0.0 759,299 + MPMX19_00738 0.25 -0.7 759,299 + MPMX19_00738 0.25 -0.8 759,299 + MPMX19_00738 0.25 +0.2 759,299 + MPMX19_00738 0.25 -0.1 759,299 + MPMX19_00738 0.25 +1.5 759,299 + MPMX19_00738 0.25 -0.7 759,300 - MPMX19_00738 0.25 -0.1 759,300 - MPMX19_00738 0.25 -0.3 759,300 - MPMX19_00738 0.25 +0.1 759,300 - MPMX19_00738 0.25 -0.2 759,300 - MPMX19_00738 0.25 -0.5 759,300 - MPMX19_00738 0.25 -1.1 759,300 - MPMX19_00738 0.25 -1.5 759,425 + MPMX19_00738 0.46 -0.8 759,425 + MPMX19_00738 0.46 -0.8 759,425 + MPMX19_00738 0.46 +0.1 759,426 - MPMX19_00738 0.46 -1.2 759,426 - MPMX19_00738 0.46 +0.0 759,542 + MPMX19_00738 0.66 -1.3 759,542 + MPMX19_00738 0.66 -0.3 759,542 + MPMX19_00738 0.66 -0.5 759,542 + MPMX19_00738 0.66 -1.7 759,542 + MPMX19_00738 0.66 -0.1 759,542 + MPMX19_00738 0.66 -0.7 759,543 - MPMX19_00738 0.66 +1.1 759,543 - MPMX19_00738 0.66 -1.8 759,543 - MPMX19_00738 0.66 -1.1 759,543 - MPMX19_00738 0.66 -1.9 759,543 - MPMX19_00738 0.66 -0.3 759,605 + MPMX19_00738 0.76 -2.3 759,605 + MPMX19_00738 0.76 -1.8 759,605 + MPMX19_00738 0.76 +0.0 759,605 + MPMX19_00738 0.76 +0.0 759,605 + MPMX19_00738 0.76 +0.5 759,606 - MPMX19_00738 0.76 -1.5 759,606 - MPMX19_00738 0.76 +0.3 759,606 - MPMX19_00738 0.76 -1.2 759,606 - MPMX19_00738 0.76 -0.1 759,656 + MPMX19_00738 0.85 -0.3 759,656 + MPMX19_00738 0.85 -1.7 759,656 + MPMX19_00738 0.85 +0.4 759,656 + MPMX19_00738 0.85 -1.0 759,656 + MPMX19_00738 0.85 +0.2 759,656 + MPMX19_00738 0.85 -0.8 759,656 + MPMX19_00738 0.85 +0.9 759,656 + MPMX19_00738 0.85 -2.8 759,656 + MPMX19_00738 0.85 -0.6 759,656 + MPMX19_00738 0.85 -1.3 759,656 + MPMX19_00738 0.85 -1.5 759,657 - MPMX19_00738 0.85 +1.5 759,657 - MPMX19_00738 0.85 +0.7 759,657 - MPMX19_00738 0.85 -1.4 759,657 - MPMX19_00738 0.85 -0.3 759,657 - MPMX19_00738 0.85 -1.1 759,657 - MPMX19_00738 0.85 -0.5 759,657 - MPMX19_00738 0.85 -0.6 759,657 - MPMX19_00738 0.85 -1.8 759,657 - MPMX19_00738 0.85 -0.7 759,657 - MPMX19_00738 0.85 -0.4 759,755 + -2.1 759,755 + -0.9 759,755 + -3.2 759,755 + +0.1 759,755 + +1.0 759,755 + -0.6 759,755 + -0.1 759,755 + -0.2 759,755 + -0.5 759,755 + -0.1 759,755 + +0.5 759,755 + -0.2 759,755 + +0.8 759,755 + -0.4 759,755 + -0.5 759,755 + -0.6 759,755 + -1.3 759,755 + -0.6 759,755 + -0.3 759,755 + +0.6 759,755 + +0.7 759,756 - +1.5 759,756 - -0.4 759,756 - +1.5 759,756 - +0.7 759,756 - -0.2 759,756 - -0.5 759,756 - -0.1 759,756 - -0.8 759,756 - +0.4 759,756 - +1.0 759,756 - -0.3 759,756 - +1.1 759,756 - +1.2 759,756 - -0.1 759,756 - +0.3 759,756 - +0.5 759,756 - -0.1 759,756 - -1.3 759,756 - +0.7 759,756 - +0.5 759,756 - +0.5 759,756 - -1.0 759,756 - +0.3 759,756 - +1.5 759,756 - +0.7 759,756 - -0.7 759,756 - -0.7 759,757 + -0.3 759,757 + -1.1 759,757 + -0.1 759,757 + -0.7 759,757 + +0.8 759,757 + +0.2 759,757 + +0.1 759,757 + -0.8 759,757 + -1.3 759,757 + -0.7 759,757 + +0.9 759,757 + +0.2 759,757 + +0.8 759,757 + -0.6 759,757 + -1.0 759,757 + +0.5 759,757 + -1.4 759,757 + +0.6 759,757 + +0.7 759,757 + -0.9 759,757 + -0.5 759,757 + +0.4 759,757 + -0.7 759,757 + +1.5 759,757 + -1.1 759,757 + -0.9 759,757 + -1.3 759,757 + -0.7 759,757 + -0.5 759,757 + -1.5 759,757 + +0.0 759,757 + -0.3 759,757 + +0.8 759,758 - +0.5 759,758 - +1.1 759,758 - -0.1 759,758 - -1.7 759,758 - +0.2 759,758 - -0.3 759,758 - -1.5 759,758 - +0.5 759,758 - -0.2 759,758 - -0.4 759,758 - +1.1 759,758 - +1.0 759,758 - +0.5 759,758 - +0.1 759,758 - +1.8 759,758 - -0.9 759,758 - -0.2 759,758 - +0.3 759,758 - -0.5 759,758 - -0.6 759,758 - +1.1 759,758 - +0.9 759,758 - -0.5 759,758 - +0.4 759,758 - -0.6 759,758 - -1.8 759,758 - -0.2 759,759 + -1.5 759,759 + +0.1 759,759 + +0.9 759,759 + -1.5 759,759 + +0.1 759,759 + +0.3 759,759 + +0.8 759,759 + -1.7 759,759 + -1.7 759,759 + +0.8 759,759 + +1.3 759,759 + +0.3 759,759 + +0.5 759,759 + +0.9 759,759 + +0.2 759,759 + -1.2 759,759 + -0.3 759,759 + -0.5 759,759 + -1.5 759,759 + +2.5 759,759 + +1.1 759,759 + -1.7 759,759 + -1.7 759,759 + -0.1 759,759 + -0.6 759,759 + -0.2 759,759 + -0.1 759,759 + -0.1 759,759 + -1.9 759,759 + -0.3 759,759 + +0.3 759,759 + -1.9 759,759 + -0.7 759,759 + +0.4 759,759 + -1.3 759,759 + -0.9 759,759 + -2.0 759,759 + -0.3 759,759 + +1.1 759,759 + -0.7 759,759 + -0.5 759,759 + +0.3 759,759 + +0.1 759,759 + -0.9 759,759 + +0.1 759,759 + -0.6 759,759 + -0.3 759,759 + -0.4 759,759 + -0.1 759,759 + +1.1 759,759 + -0.2 759,759 + +0.9 759,759 + -0.6 759,760 - -0.3 759,760 - -2.1 759,760 - -0.8 759,760 - +1.8 759,760 - -0.7 759,760 - +0.5 759,760 - +1.5 759,760 - +0.8 759,760 - +0.2 759,760 - +1.4 759,760 - +0.4 759,760 - +0.5 759,760 - +0.4 759,760 - +0.1 759,760 - -0.4 759,760 - +0.6 759,760 - -0.5 759,760 - +0.5 759,760 - +0.2 759,760 - -1.3 759,760 - +1.2 759,760 - -0.4 759,760 - +1.5 759,760 - +0.1 759,760 - +0.8 759,760 - +1.1 759,760 - -0.2 759,760 - -0.3 759,760 - +0.7 759,760 - -1.9 759,760 - -0.6 759,760 - -0.7 759,760 - -0.1 759,760 - -0.6 759,760 - +0.3 759,760 - -0.5 759,760 - -0.2 759,760 - -0.7 759,760 - -0.2 759,760 - -0.8 759,779 + +0.3 759,780 - -0.3 759,780 - -0.8 759,780 - +0.8 759,780 - -0.8 760,398 - MPMX19_00739 0.82 -1.2 760,532 + -0.6 760,532 + +0.9 760,532 + -1.1 760,532 + -1.4 760,532 + +0.1 760,532 + +0.2 760,533 - -0.6 760,533 - -0.0 760,533 - -1.3 760,533 - -1.7 760,533 - -2.2 760,533 - -0.5 760,533 - -1.0 760,533 - +0.4 760,533 - +0.4 760,533 - +1.3 760,533 - +0.5 760,533 - -1.3 760,533 - -0.7 760,533 - -2.0 760,534 + -1.9 760,534 + +0.9 760,535 - -0.5 760,535 - -0.4 760,535 - +0.1
Or see this region's nucleotide sequence