Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00694 and MPMX19_00695 are separated by 172 nucleotides MPMX19_00695 and MPMX19_00696 are separated by 36 nucleotides
MPMX19_00694: MPMX19_00694 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 716,066 to 716,890
_00694
MPMX19_00695: MPMX19_00695 - putative transcriptional regulatory protein, at 717,063 to 717,815
_00695
MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940
_00696
Position (kb) 717
718 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.336 kb on + strand, within MPMX19_00694 at 716.337 kb on - strand, within MPMX19_00694 at 716.363 kb on + strand, within MPMX19_00694 at 716.364 kb on - strand, within MPMX19_00694 at 716.364 kb on - strand, within MPMX19_00694 at 716.681 kb on + strand, within MPMX19_00694 at 716.681 kb on + strand, within MPMX19_00694 at 716.682 kb on - strand, within MPMX19_00694 at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.932 kb on + strand at 716.933 kb on - strand at 716.933 kb on - strand at 716.933 kb on - strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.324 kb on + strand, within MPMX19_00695 at 717.333 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 716,129 - -0.3 716,129 - -0.5 716,129 - -1.5 716,129 - -0.8 716,129 - -1.3 716,269 + MPMX19_00694 0.25 +0.5 716,269 + MPMX19_00694 0.25 +1.9 716,269 + MPMX19_00694 0.25 +2.5 716,269 + MPMX19_00694 0.25 -0.8 716,269 + MPMX19_00694 0.25 -0.8 716,269 + MPMX19_00694 0.25 -0.1 716,270 - MPMX19_00694 0.25 -1.3 716,270 - MPMX19_00694 0.25 -0.8 716,270 - MPMX19_00694 0.25 +0.3 716,336 + MPMX19_00694 0.33 -1.1 716,337 - MPMX19_00694 0.33 +0.9 716,363 + MPMX19_00694 0.36 +1.3 716,364 - MPMX19_00694 0.36 +1.8 716,364 - MPMX19_00694 0.36 -2.2 716,681 + MPMX19_00694 0.75 +1.5 716,681 + MPMX19_00694 0.75 -0.8 716,682 - MPMX19_00694 0.75 +0.9 716,888 + -1.3 716,888 + +0.5 716,888 + +1.0 716,888 + -1.3 716,888 + -0.7 716,889 - -0.1 716,889 - -0.1 716,889 - -0.4 716,889 - +0.7 716,889 - -0.1 716,932 + +0.8 716,933 - -0.9 716,933 - +0.2 716,933 - -0.5 716,943 + -0.7 716,943 + -1.5 716,943 + +0.1 716,943 + +0.0 716,943 + -0.9 716,944 - -0.3 716,944 - +0.5 716,944 - +0.9 716,944 - -0.2 716,944 - -0.8 716,944 - -1.3 716,944 - -0.2 717,000 + -0.7 717,000 + +0.3 717,000 + -0.5 717,000 + -0.9 717,000 + -0.0 717,000 + +0.5 717,000 + -0.7 717,000 + +0.5 717,000 + +0.7 717,000 + -0.4 717,000 + -0.6 717,000 + -1.1 717,000 + -0.7 717,000 + +0.3 717,000 + -1.0 717,000 + -0.2 717,000 + +0.6 717,000 + -0.1 717,000 + -1.8 717,000 + +0.1 717,000 + -0.2 717,000 + -1.5 717,000 + +1.2 717,000 + +0.7 717,000 + -1.1 717,000 + -1.3 717,000 + -0.2 717,000 + +0.2 717,000 + -0.7 717,000 + -0.5 717,309 + MPMX19_00695 0.33 -0.1 717,309 + MPMX19_00695 0.33 -0.7 717,309 + MPMX19_00695 0.33 +0.3 717,309 + MPMX19_00695 0.33 -2.2 717,324 + MPMX19_00695 0.35 -1.6 717,333 + MPMX19_00695 0.36 +0.2 717,423 + MPMX19_00695 0.48 -0.1 717,423 + MPMX19_00695 0.48 +0.0 717,423 + MPMX19_00695 0.48 -0.2 717,423 + MPMX19_00695 0.48 +0.3 718,388 + MPMX19_00696 0.49 +0.8 718,388 + MPMX19_00696 0.49 -0.5 718,388 + MPMX19_00696 0.49 +0.3 718,388 + MPMX19_00696 0.49 +0.2 718,388 + MPMX19_00696 0.49 -0.2 718,388 + MPMX19_00696 0.49 -0.1 718,388 + MPMX19_00696 0.49 +0.5 718,388 + MPMX19_00696 0.49 +0.4 718,388 + MPMX19_00696 0.49 +1.2 718,388 + MPMX19_00696 0.49 -0.2 718,388 + MPMX19_00696 0.49 -0.3 718,389 - MPMX19_00696 0.49 -0.5 718,389 - MPMX19_00696 0.49 +0.9 718,389 - MPMX19_00696 0.49 -0.8 718,389 - MPMX19_00696 0.49 +0.5 718,389 - MPMX19_00696 0.49 +0.1 718,389 - MPMX19_00696 0.49 +0.3 718,389 - MPMX19_00696 0.49 -1.1 718,631 + MPMX19_00696 0.72 +0.9 718,631 + MPMX19_00696 0.72 +1.9 718,631 + MPMX19_00696 0.72 -1.7 718,631 + MPMX19_00696 0.72 -1.8 718,631 + MPMX19_00696 0.72 +1.9 718,631 + MPMX19_00696 0.72 -0.1 718,631 + MPMX19_00696 0.72 +1.3 718,631 + MPMX19_00696 0.72 -1.1 718,631 + MPMX19_00696 0.72 +1.7 718,633 + MPMX19_00696 0.72 -1.1 718,633 + MPMX19_00696 0.72 -0.6 718,633 + MPMX19_00696 0.72 +0.1
Or see this region's nucleotide sequence