Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00682 and MPMX19_00683 are separated by 145 nucleotides MPMX19_00683 and MPMX19_00684 are separated by 3 nucleotides
MPMX19_00682: MPMX19_00682 - putative membrane transporter protein YfcA, at 705,076 to 705,882
_00682
MPMX19_00683: MPMX19_00683 - Thiamine-phosphate synthase, at 706,028 to 706,699
_00683
MPMX19_00684: MPMX19_00684 - Fructose-bisphosphate aldolase class 1, at 706,703 to 707,632
_00684
Position (kb) 706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 705.033 kb on + strand at 705.033 kb on + strand at 705.033 kb on + strand at 705.033 kb on + strand at 705.034 kb on - strand at 705.034 kb on - strand at 705.034 kb on - strand at 705.034 kb on - strand at 705.034 kb on - strand at 705.043 kb on + strand at 705.043 kb on + strand at 705.043 kb on + strand at 705.043 kb on + strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.044 kb on - strand at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.216 kb on + strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.217 kb on - strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.240 kb on + strand, within MPMX19_00682 at 705.241 kb on - strand, within MPMX19_00682 at 705.241 kb on - strand, within MPMX19_00682 at 705.241 kb on - strand, within MPMX19_00682 at 705.241 kb on - strand, within MPMX19_00682 at 705.241 kb on - strand, within MPMX19_00682 at 705.241 kb on - strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.242 kb on + strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.243 kb on - strand, within MPMX19_00682 at 705.371 kb on + strand, within MPMX19_00682 at 705.371 kb on + strand, within MPMX19_00682 at 705.371 kb on + strand, within MPMX19_00682 at 705.371 kb on + strand, within MPMX19_00682 at 705.371 kb on + strand, within MPMX19_00682 at 705.372 kb on - strand, within MPMX19_00682 at 705.372 kb on - strand, within MPMX19_00682 at 705.372 kb on - strand, within MPMX19_00682 at 705.372 kb on - strand, within MPMX19_00682 at 705.372 kb on - strand, within MPMX19_00682 at 705.437 kb on + strand, within MPMX19_00682 at 705.437 kb on + strand, within MPMX19_00682 at 705.437 kb on + strand, within MPMX19_00682 at 705.437 kb on + strand, within MPMX19_00682 at 705.437 kb on + strand, within MPMX19_00682 at 705.437 kb on + strand, within MPMX19_00682 at 705.437 kb on + strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.438 kb on - strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.533 kb on + strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.534 kb on - strand, within MPMX19_00682 at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 705,033 + -0.9 705,033 + -0.2 705,033 + -2.0 705,033 + -0.2 705,034 - -1.1 705,034 - -0.1 705,034 - -1.3 705,034 - -0.7 705,034 - +0.2 705,043 + +0.3 705,043 + -1.1 705,043 + -1.7 705,043 + +0.0 705,044 - +0.8 705,044 - +0.3 705,044 - -2.2 705,044 - -1.1 705,044 - -2.4 705,044 - +0.5 705,044 - -1.4 705,044 - -0.1 705,044 - -2.1 705,044 - -0.6 705,044 - -0.2 705,044 - +0.2 705,044 - +0.6 705,044 - -0.2 705,216 + MPMX19_00682 0.17 -1.2 705,216 + MPMX19_00682 0.17 +0.1 705,216 + MPMX19_00682 0.17 -0.7 705,216 + MPMX19_00682 0.17 -0.9 705,216 + MPMX19_00682 0.17 +0.2 705,216 + MPMX19_00682 0.17 -0.1 705,216 + MPMX19_00682 0.17 -0.2 705,216 + MPMX19_00682 0.17 +0.3 705,216 + MPMX19_00682 0.17 -0.2 705,216 + MPMX19_00682 0.17 -1.1 705,217 - MPMX19_00682 0.17 -0.9 705,217 - MPMX19_00682 0.17 -0.3 705,217 - MPMX19_00682 0.17 -1.5 705,217 - MPMX19_00682 0.17 +0.5 705,217 - MPMX19_00682 0.17 +0.2 705,217 - MPMX19_00682 0.17 -0.2 705,217 - MPMX19_00682 0.17 +0.9 705,217 - MPMX19_00682 0.17 -0.0 705,217 - MPMX19_00682 0.17 +0.2 705,240 + MPMX19_00682 0.20 -1.4 705,240 + MPMX19_00682 0.20 +0.7 705,240 + MPMX19_00682 0.20 -0.2 705,240 + MPMX19_00682 0.20 +0.2 705,240 + MPMX19_00682 0.20 -0.5 705,240 + MPMX19_00682 0.20 -0.0 705,240 + MPMX19_00682 0.20 +0.1 705,240 + MPMX19_00682 0.20 -0.7 705,240 + MPMX19_00682 0.20 +0.4 705,240 + MPMX19_00682 0.20 -0.7 705,241 - MPMX19_00682 0.20 -0.7 705,241 - MPMX19_00682 0.20 -0.2 705,241 - MPMX19_00682 0.20 +0.0 705,241 - MPMX19_00682 0.20 +0.2 705,241 - MPMX19_00682 0.20 -0.3 705,241 - MPMX19_00682 0.20 +0.3 705,242 + MPMX19_00682 0.21 -0.1 705,242 + MPMX19_00682 0.21 +0.1 705,242 + MPMX19_00682 0.21 -0.1 705,242 + MPMX19_00682 0.21 +0.7 705,242 + MPMX19_00682 0.21 -1.2 705,242 + MPMX19_00682 0.21 +0.1 705,242 + MPMX19_00682 0.21 -0.4 705,242 + MPMX19_00682 0.21 +0.9 705,242 + MPMX19_00682 0.21 +0.2 705,242 + MPMX19_00682 0.21 -0.3 705,242 + MPMX19_00682 0.21 +0.5 705,242 + MPMX19_00682 0.21 -0.1 705,242 + MPMX19_00682 0.21 -2.1 705,242 + MPMX19_00682 0.21 +0.2 705,242 + MPMX19_00682 0.21 -0.5 705,242 + MPMX19_00682 0.21 +0.0 705,242 + MPMX19_00682 0.21 -0.7 705,243 - MPMX19_00682 0.21 -0.8 705,243 - MPMX19_00682 0.21 -0.2 705,243 - MPMX19_00682 0.21 -0.3 705,243 - MPMX19_00682 0.21 -1.3 705,243 - MPMX19_00682 0.21 +0.3 705,243 - MPMX19_00682 0.21 +0.1 705,243 - MPMX19_00682 0.21 +0.3 705,243 - MPMX19_00682 0.21 -0.8 705,243 - MPMX19_00682 0.21 -0.3 705,243 - MPMX19_00682 0.21 -0.6 705,243 - MPMX19_00682 0.21 -1.1 705,243 - MPMX19_00682 0.21 +1.0 705,243 - MPMX19_00682 0.21 -0.3 705,243 - MPMX19_00682 0.21 -0.7 705,371 + MPMX19_00682 0.37 -0.3 705,371 + MPMX19_00682 0.37 +1.4 705,371 + MPMX19_00682 0.37 -0.1 705,371 + MPMX19_00682 0.37 -0.2 705,371 + MPMX19_00682 0.37 -0.2 705,372 - MPMX19_00682 0.37 +1.4 705,372 - MPMX19_00682 0.37 -0.1 705,372 - MPMX19_00682 0.37 +0.0 705,372 - MPMX19_00682 0.37 +0.1 705,372 - MPMX19_00682 0.37 -1.4 705,437 + MPMX19_00682 0.45 -1.2 705,437 + MPMX19_00682 0.45 -1.8 705,437 + MPMX19_00682 0.45 -0.1 705,437 + MPMX19_00682 0.45 -0.2 705,437 + MPMX19_00682 0.45 -0.1 705,437 + MPMX19_00682 0.45 -1.8 705,437 + MPMX19_00682 0.45 -0.2 705,438 - MPMX19_00682 0.45 -0.2 705,438 - MPMX19_00682 0.45 -0.7 705,438 - MPMX19_00682 0.45 +0.2 705,438 - MPMX19_00682 0.45 +0.1 705,438 - MPMX19_00682 0.45 -0.4 705,438 - MPMX19_00682 0.45 -0.1 705,438 - MPMX19_00682 0.45 -1.8 705,438 - MPMX19_00682 0.45 -0.9 705,438 - MPMX19_00682 0.45 +0.8 705,438 - MPMX19_00682 0.45 -1.8 705,438 - MPMX19_00682 0.45 -1.7 705,533 + MPMX19_00682 0.57 -1.9 705,533 + MPMX19_00682 0.57 +1.2 705,533 + MPMX19_00682 0.57 +0.2 705,533 + MPMX19_00682 0.57 -0.2 705,533 + MPMX19_00682 0.57 -2.6 705,533 + MPMX19_00682 0.57 -0.1 705,533 + MPMX19_00682 0.57 +0.2 705,533 + MPMX19_00682 0.57 -0.1 705,534 - MPMX19_00682 0.57 -0.9 705,534 - MPMX19_00682 0.57 -1.5 705,534 - MPMX19_00682 0.57 -0.4 705,534 - MPMX19_00682 0.57 -0.5 705,534 - MPMX19_00682 0.57 +0.9 705,534 - MPMX19_00682 0.57 +1.3 705,534 - MPMX19_00682 0.57 +0.5 705,534 - MPMX19_00682 0.57 -1.0 705,534 - MPMX19_00682 0.57 -2.6 705,534 - MPMX19_00682 0.57 +0.1 705,902 + +0.2 705,902 + -1.1 705,902 + +0.7 705,902 + +0.1 705,902 + -0.4 705,902 + -1.8 705,902 + -0.7 705,902 + -0.3 705,902 + -0.9 705,902 + -0.2 705,902 + -1.3 705,902 + -1.7 705,902 + +0.5 705,903 - -0.5 705,903 - +0.2 705,903 - -0.4 705,903 - -1.7 705,903 - -0.6 705,903 - +0.0 705,903 - -0.8 705,903 - -1.4 705,953 + -2.3 705,953 + +0.5 705,953 + +0.3 705,953 + +0.2 705,953 + -0.5 705,953 + -0.4 705,953 + +0.8 705,953 + +0.2 705,953 + +0.0 705,953 + +0.3 705,953 + -2.9 705,953 + -0.9 705,953 + -1.9 705,953 + +1.1 705,953 + -0.8 705,953 + +1.5 705,954 - -0.5 705,954 - +0.7 705,954 - +0.5 705,954 - +0.0 705,954 - -0.6 705,954 - +0.1 705,954 - -0.3 705,954 - +1.5 705,954 - -1.7 705,954 - +0.2 705,954 - -0.5 705,956 + -0.8 705,956 + +1.0 705,956 + -0.1 705,956 + +0.1 705,956 + -2.3 705,956 + -0.8 705,956 + -1.3 705,956 + -2.7 705,956 + -1.7 705,957 - -0.3 705,957 - -1.1 705,957 - +1.1 705,957 - +0.7 705,957 - -0.1 705,957 - -0.8 705,957 - -1.3 705,957 - -0.4 705,957 - -1.3 705,957 - -0.8 705,957 - -0.4 705,957 - +0.5 705,957 - +0.7 705,957 - -0.2 705,957 - +0.8 705,957 - -0.3 705,957 - -1.5 705,957 - +0.9 705,999 + +1.7
Or see this region's nucleotide sequence