Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00606 and MPMX19_00607 are separated by 71 nucleotides MPMX19_00607 and MPMX19_00608 are separated by 105 nucleotides MPMX19_00608 and MPMX19_00609 are separated by 526 nucleotides
MPMX19_00606: MPMX19_00606 - 3-isopropylmalate dehydratase small subunit 1, at 620,365 to 620,976
_00606
MPMX19_00607: MPMX19_00607 - 3-isopropylmalate dehydrogenase, at 621,048 to 622,163
_00607
MPMX19_00608: MPMX19_00608 - hypothetical protein, at 622,269 to 622,559
_00608
MPMX19_00609: MPMX19_00609 - Chemotaxis protein CheY, at 623,086 to 623,481
_00609
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 620.107 kb on - strand at 620.214 kb on + strand at 620.214 kb on + strand at 620.214 kb on + strand at 620.214 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.932 kb on + strand at 620.932 kb on + strand at 620.932 kb on + strand at 620.932 kb on + strand at 620.933 kb on - strand at 620.933 kb on - strand at 620.933 kb on - strand at 620.933 kb on - strand at 620.933 kb on - strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.904 kb on - strand, within MPMX19_00607 at 621.904 kb on - strand, within MPMX19_00607 at 622.245 kb on + strand at 622.245 kb on + strand at 622.246 kb on - strand at 622.246 kb on - strand at 622.461 kb on + strand, within MPMX19_00608 at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.628 kb on + strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.644 kb on - strand at 622.780 kb on - strand at 622.780 kb on - strand at 622.839 kb on + strand at 622.840 kb on - strand at 622.859 kb on - strand at 622.861 kb on - strand at 622.861 kb on - strand at 622.956 kb on + strand at 622.995 kb on + strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.997 kb on + strand at 622.998 kb on - strand at 622.998 kb on - strand at 623.000 kb on + strand at 623.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 620,107 - +0.2 620,214 + -0.6 620,214 + +1.1 620,214 + +1.5 620,214 + +0.6 620,306 + +1.5 620,306 + +0.9 620,306 + +0.4 620,306 + -0.8 620,306 + +0.3 620,306 + -0.5 620,306 + +0.5 620,306 + -0.2 620,306 + -2.5 620,307 - -0.5 620,307 - -1.9 620,307 - -1.6 620,307 - -1.3 620,307 - -0.7 620,307 - -0.2 620,307 - -1.1 620,307 - -3.0 620,307 - +0.7 620,506 + MPMX19_00606 0.23 +0.4 620,506 + MPMX19_00606 0.23 -0.6 620,506 + MPMX19_00606 0.23 -0.5 620,506 + MPMX19_00606 0.23 -1.5 620,506 + MPMX19_00606 0.23 -0.9 620,507 - MPMX19_00606 0.23 +0.1 620,507 - MPMX19_00606 0.23 -0.9 620,507 - MPMX19_00606 0.23 +0.2 620,507 - MPMX19_00606 0.23 -0.8 620,507 - MPMX19_00606 0.23 +0.3 620,507 - MPMX19_00606 0.23 -0.5 620,507 - MPMX19_00606 0.23 -1.3 620,507 - MPMX19_00606 0.23 -1.6 620,507 - MPMX19_00606 0.23 -0.1 620,507 - MPMX19_00606 0.23 -1.0 620,507 - MPMX19_00606 0.23 -1.6 620,507 - MPMX19_00606 0.23 -2.4 620,686 + MPMX19_00606 0.52 -2.2 620,686 + MPMX19_00606 0.52 -0.5 620,686 + MPMX19_00606 0.52 -0.5 620,686 + MPMX19_00606 0.52 -0.2 620,686 + MPMX19_00606 0.52 -0.2 620,686 + MPMX19_00606 0.52 +0.5 620,686 + MPMX19_00606 0.52 +1.9 620,686 + MPMX19_00606 0.52 -0.2 620,686 + MPMX19_00606 0.52 +0.5 620,687 - MPMX19_00606 0.53 -0.6 620,687 - MPMX19_00606 0.53 -0.5 620,687 - MPMX19_00606 0.53 +0.4 620,687 - MPMX19_00606 0.53 -0.1 620,687 - MPMX19_00606 0.53 -1.6 620,687 - MPMX19_00606 0.53 -0.6 620,687 - MPMX19_00606 0.53 -1.5 620,687 - MPMX19_00606 0.53 +0.1 620,687 - MPMX19_00606 0.53 +0.3 620,687 - MPMX19_00606 0.53 +1.0 620,687 - MPMX19_00606 0.53 -0.5 620,687 - MPMX19_00606 0.53 -0.7 620,932 + -0.3 620,932 + -1.1 620,932 + -0.8 620,932 + -0.6 620,933 - -0.5 620,933 - -1.5 620,933 - -1.5 620,933 - -1.1 620,933 - -0.5 621,059 + +0.1 621,059 + -0.9 621,059 + +0.9 621,059 + -1.1 621,059 + -0.2 621,059 + -2.1 621,059 + -1.3 621,059 + -0.8 621,060 - +0.4 621,060 - +1.0 621,060 - +1.1 621,060 - -0.5 621,060 - +0.4 621,060 - -1.1 621,060 - +2.5 621,060 - -1.1 621,060 - -1.5 621,060 - +0.3 621,060 - -0.6 621,060 - -1.8 621,060 - -1.5 621,306 + MPMX19_00607 0.23 -1.5 621,306 + MPMX19_00607 0.23 -0.5 621,306 + MPMX19_00607 0.23 -1.6 621,306 + MPMX19_00607 0.23 -0.7 621,306 + MPMX19_00607 0.23 -1.1 621,306 + MPMX19_00607 0.23 +0.3 621,306 + MPMX19_00607 0.23 +1.5 621,306 + MPMX19_00607 0.23 +0.7 621,307 - MPMX19_00607 0.23 -1.1 621,307 - MPMX19_00607 0.23 -0.5 621,307 - MPMX19_00607 0.23 -0.7 621,307 - MPMX19_00607 0.23 -1.2 621,307 - MPMX19_00607 0.23 -1.6 621,307 - MPMX19_00607 0.23 -1.1 621,477 + MPMX19_00607 0.38 -0.4 621,477 + MPMX19_00607 0.38 -0.4 621,477 + MPMX19_00607 0.38 -0.7 621,477 + MPMX19_00607 0.38 -0.0 621,478 - MPMX19_00607 0.39 -0.5 621,478 - MPMX19_00607 0.39 -1.1 621,478 - MPMX19_00607 0.39 +0.2 621,478 - MPMX19_00607 0.39 -0.5 621,546 + MPMX19_00607 0.45 -0.3 621,546 + MPMX19_00607 0.45 -0.1 621,546 + MPMX19_00607 0.45 -0.6 621,546 + MPMX19_00607 0.45 -1.8 621,546 + MPMX19_00607 0.45 -0.3 621,546 + MPMX19_00607 0.45 -1.5 621,546 + MPMX19_00607 0.45 +0.5 621,546 + MPMX19_00607 0.45 -0.8 621,546 + MPMX19_00607 0.45 -0.5 621,546 + MPMX19_00607 0.45 +0.4 621,546 + MPMX19_00607 0.45 -0.9 621,546 + MPMX19_00607 0.45 -1.6 621,547 - MPMX19_00607 0.45 +0.2 621,547 - MPMX19_00607 0.45 -0.6 621,547 - MPMX19_00607 0.45 -0.1 621,547 - MPMX19_00607 0.45 -1.3 621,547 - MPMX19_00607 0.45 -1.9 621,547 - MPMX19_00607 0.45 -0.3 621,547 - MPMX19_00607 0.45 -0.8 621,547 - MPMX19_00607 0.45 -0.6 621,547 - MPMX19_00607 0.45 -1.5 621,547 - MPMX19_00607 0.45 -0.1 621,547 - MPMX19_00607 0.45 +0.3 621,547 - MPMX19_00607 0.45 +1.5 621,547 - MPMX19_00607 0.45 +0.9 621,547 - MPMX19_00607 0.45 +0.7 621,547 - MPMX19_00607 0.45 -0.9 621,723 + MPMX19_00607 0.60 -0.3 621,723 + MPMX19_00607 0.60 -1.9 621,723 + MPMX19_00607 0.60 -1.5 621,723 + MPMX19_00607 0.60 -0.3 621,723 + MPMX19_00607 0.60 -1.2 621,723 + MPMX19_00607 0.60 +0.1 621,723 + MPMX19_00607 0.60 -1.9 621,723 + MPMX19_00607 0.60 -0.5 621,723 + MPMX19_00607 0.60 -0.6 621,723 + MPMX19_00607 0.60 -0.5 621,723 + MPMX19_00607 0.60 +0.1 621,723 + MPMX19_00607 0.60 +0.1 621,723 + MPMX19_00607 0.60 +0.5 621,723 + MPMX19_00607 0.60 -2.3 621,723 + MPMX19_00607 0.60 -0.1 621,723 + MPMX19_00607 0.60 -2.5 621,723 + MPMX19_00607 0.60 -1.8 621,723 + MPMX19_00607 0.60 -0.1 621,723 + MPMX19_00607 0.60 -0.9 621,723 + MPMX19_00607 0.60 -1.1 621,723 + MPMX19_00607 0.60 -1.6 621,723 + MPMX19_00607 0.60 +0.9 621,723 + MPMX19_00607 0.60 -1.5 621,724 - MPMX19_00607 0.61 +0.1 621,724 - MPMX19_00607 0.61 -1.8 621,724 - MPMX19_00607 0.61 +1.2 621,724 - MPMX19_00607 0.61 -1.4 621,724 - MPMX19_00607 0.61 +0.4 621,724 - MPMX19_00607 0.61 -0.9 621,724 - MPMX19_00607 0.61 -0.3 621,724 - MPMX19_00607 0.61 +0.2 621,724 - MPMX19_00607 0.61 -0.2 621,724 - MPMX19_00607 0.61 +0.4 621,724 - MPMX19_00607 0.61 -1.1 621,724 - MPMX19_00607 0.61 -0.4 621,724 - MPMX19_00607 0.61 +0.8 621,724 - MPMX19_00607 0.61 -0.9 621,724 - MPMX19_00607 0.61 -0.9 621,724 - MPMX19_00607 0.61 -3.0 621,903 + MPMX19_00607 0.77 -1.5 621,903 + MPMX19_00607 0.77 -1.7 621,903 + MPMX19_00607 0.77 -0.7 621,903 + MPMX19_00607 0.77 -0.9 621,904 - MPMX19_00607 0.77 +0.1 621,904 - MPMX19_00607 0.77 +0.8 622,245 + +0.4 622,245 + -0.2 622,246 - +0.2 622,246 - +0.1 622,461 + MPMX19_00608 0.66 -1.4 622,535 + -2.1 622,535 + -0.2 622,535 + -1.7 622,535 + -0.8 622,535 + -0.5 622,536 - +0.2 622,536 - +0.3 622,536 - -0.1 622,536 - -0.8 622,628 + +1.0 622,629 - +0.2 622,629 - +0.8 622,629 - +1.5 622,629 - -0.3 622,630 + -0.3 622,630 + +0.8 622,630 + +0.5 622,630 + +0.4 622,644 - -0.3 622,780 - +0.3 622,780 - -1.5 622,839 + -0.5 622,840 - +0.1 622,859 - -0.2 622,861 - -1.2 622,861 - -0.7 622,956 + +0.5 622,995 + +1.2 622,996 - -1.1 622,996 - -0.9 622,996 - -1.5 622,997 + +0.1 622,998 - +0.8 622,998 - +0.1 623,000 + -0.7 623,000 + -0.5
Or see this region's nucleotide sequence