Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00142

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00140 and MPMX19_00141 are separated by 103 nucleotidesMPMX19_00141 and MPMX19_00142 are separated by 12 nucleotidesMPMX19_00142 and MPMX19_00143 overlap by 4 nucleotidesMPMX19_00143 and MPMX19_00144 are separated by 1 nucleotides MPMX19_00140: MPMX19_00140 - hypothetical protein, at 153,936 to 154,703 _00140 MPMX19_00141: MPMX19_00141 - hypothetical protein, at 154,807 to 155,061 _00141 MPMX19_00142: MPMX19_00142 - hypothetical protein, at 155,074 to 155,256 _00142 MPMX19_00143: MPMX19_00143 - Tyrosine recombinase XerC, at 155,253 to 156,251 _00143 MPMX19_00144: MPMX19_00144 - hypothetical protein, at 156,253 to 156,759 _00144 Position (kb) 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.882 kb on + strand, within MPMX19_00141at 154.882 kb on + strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 155.126 kb on - strand, within MPMX19_00142at 155.145 kb on - strand, within MPMX19_00142at 155.145 kb on - strand, within MPMX19_00142at 155.145 kb on - strand, within MPMX19_00142at 155.364 kb on + strand, within MPMX19_00143at 155.364 kb on + strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.397 kb on + strand, within MPMX19_00143at 155.680 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.193 kb on - strandat 156.193 kb on - strandat 156.193 kb on - strandat 156.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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154,410 + MPMX19_00140 0.62 -0.8
154,410 + MPMX19_00140 0.62 -2.0
154,410 + MPMX19_00140 0.62 -0.0
154,410 + MPMX19_00140 0.62 -1.6
154,410 + MPMX19_00140 0.62 +1.3
154,410 + MPMX19_00140 0.62 -0.5
154,410 + MPMX19_00140 0.62 -1.7
154,410 + MPMX19_00140 0.62 -1.7
154,410 + MPMX19_00140 0.62 -1.1
154,410 + MPMX19_00140 0.62 -1.7
154,410 + MPMX19_00140 0.62 +0.9
154,410 + MPMX19_00140 0.62 +0.3
154,410 + MPMX19_00140 0.62 -1.3
154,410 + MPMX19_00140 0.62 -0.6
154,410 + MPMX19_00140 0.62 -0.6
154,411 - MPMX19_00140 0.62 -1.0
154,411 - MPMX19_00140 0.62 -0.4
154,411 - MPMX19_00140 0.62 +0.0
154,411 - MPMX19_00140 0.62 -0.3
154,411 - MPMX19_00140 0.62 -2.5
154,411 - MPMX19_00140 0.62 +0.8
154,411 - MPMX19_00140 0.62 -0.1
154,411 - MPMX19_00140 0.62 -0.5
154,411 - MPMX19_00140 0.62 -1.7
154,411 - MPMX19_00140 0.62 -1.4
154,584 + MPMX19_00140 0.84 +0.1
154,584 + MPMX19_00140 0.84 -2.0
154,584 + MPMX19_00140 0.84 -0.7
154,584 + MPMX19_00140 0.84 -0.3
154,584 + MPMX19_00140 0.84 -1.5
154,584 + MPMX19_00140 0.84 -2.3
154,584 + MPMX19_00140 0.84 -1.4
154,584 + MPMX19_00140 0.84 -0.4
154,584 + MPMX19_00140 0.84 +0.6
154,584 + MPMX19_00140 0.84 -2.1
154,585 - MPMX19_00140 0.85 -1.2
154,585 - MPMX19_00140 0.85 -1.5
154,585 - MPMX19_00140 0.85 -1.1
154,585 - MPMX19_00140 0.85 -1.7
154,585 - MPMX19_00140 0.85 +0.0
154,882 + MPMX19_00141 0.29 -0.5
154,882 + MPMX19_00141 0.29 -0.0
154,883 - MPMX19_00141 0.30 +0.0
154,883 - MPMX19_00141 0.30 +0.6
154,883 - MPMX19_00141 0.30 -1.1
154,883 - MPMX19_00141 0.30 -0.4
154,883 - MPMX19_00141 0.30 -0.4
154,883 - MPMX19_00141 0.30 -0.6
154,883 - MPMX19_00141 0.30 -1.8
154,883 - MPMX19_00141 0.30 -1.4
154,883 - MPMX19_00141 0.30 -0.4
154,883 - MPMX19_00141 0.30 +0.1
155,126 - MPMX19_00142 0.28 -0.3
155,145 - MPMX19_00142 0.39 -2.7
155,145 - MPMX19_00142 0.39 -1.2
155,145 - MPMX19_00142 0.39 -0.2
155,364 + MPMX19_00143 0.11 +0.0
155,364 + MPMX19_00143 0.11 -1.2
155,365 - MPMX19_00143 0.11 -1.4
155,365 - MPMX19_00143 0.11 +0.2
155,365 - MPMX19_00143 0.11 -0.4
155,365 - MPMX19_00143 0.11 +0.2
155,365 - MPMX19_00143 0.11 -2.0
155,365 - MPMX19_00143 0.11 +0.8
155,365 - MPMX19_00143 0.11 -1.0
155,365 - MPMX19_00143 0.11 +0.0
155,365 - MPMX19_00143 0.11 -0.8
155,365 - MPMX19_00143 0.11 -0.1
155,365 - MPMX19_00143 0.11 +0.1
155,365 - MPMX19_00143 0.11 -0.4
155,365 - MPMX19_00143 0.11 +1.3
155,365 - MPMX19_00143 0.11 +0.5
155,365 - MPMX19_00143 0.11 +0.0
155,365 - MPMX19_00143 0.11 +0.2
155,365 - MPMX19_00143 0.11 -1.0
155,365 - MPMX19_00143 0.11 -0.3
155,397 + MPMX19_00143 0.14 -0.3
155,680 - MPMX19_00143 0.43 -0.4
155,842 - MPMX19_00143 0.59 +0.0
155,842 - MPMX19_00143 0.59 -0.2
155,842 - MPMX19_00143 0.59 -1.0
155,842 - MPMX19_00143 0.59 -3.3
155,842 - MPMX19_00143 0.59 -0.5
155,842 - MPMX19_00143 0.59 -0.4
156,034 - MPMX19_00143 0.78 +0.4
156,034 - MPMX19_00143 0.78 -1.4
156,034 - MPMX19_00143 0.78 -0.7
156,034 - MPMX19_00143 0.78 +1.3
156,034 - MPMX19_00143 0.78 -0.8
156,034 - MPMX19_00143 0.78 -1.5
156,034 - MPMX19_00143 0.78 -1.7
156,034 - MPMX19_00143 0.78 -0.7
156,193 - -0.4
156,193 - -1.1
156,193 - -0.2
156,193 - +0.3

Or see this region's nucleotide sequence