Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00117 and MPMX19_00118 are separated by 371 nucleotides MPMX19_00118 and MPMX19_00119 are separated by 129 nucleotides
MPMX19_00117: MPMX19_00117 - Protein translocase subunit SecA, at 127,534 to 130,269
_00117
MPMX19_00118: MPMX19_00118 - putative parvulin-type peptidyl-prolyl cis-trans isomerase, at 130,641 to 131,699
_00118
MPMX19_00119: MPMX19_00119 - Arginine biosynthesis bifunctional protein ArgJ, at 131,829 to 133,067
_00119
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.285 kb on - strand at 130.285 kb on - strand at 130.285 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.330 kb on - strand at 130.330 kb on - strand at 130.330 kb on - strand at 130.330 kb on - strand at 130.524 kb on - strand at 130.524 kb on - strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.546 kb on + strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.547 kb on - strand at 130.598 kb on + strand at 130.598 kb on + strand at 130.598 kb on + strand at 130.598 kb on + strand at 130.598 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.608 kb on + strand at 130.609 kb on - strand at 130.992 kb on + strand, within MPMX19_00118 at 130.992 kb on + strand, within MPMX19_00118 at 130.992 kb on + strand, within MPMX19_00118 at 130.992 kb on + strand, within MPMX19_00118 at 130.992 kb on + strand, within MPMX19_00118 at 130.992 kb on + strand, within MPMX19_00118 at 130.992 kb on + strand, within MPMX19_00118 at 130.992 kb on + strand, within MPMX19_00118 at 131.046 kb on + strand, within MPMX19_00118 at 131.046 kb on + strand, within MPMX19_00118 at 131.046 kb on + strand, within MPMX19_00118 at 131.046 kb on + strand, within MPMX19_00118 at 131.124 kb on + strand, within MPMX19_00118 at 131.124 kb on + strand, within MPMX19_00118 at 131.124 kb on + strand, within MPMX19_00118 at 131.124 kb on + strand, within MPMX19_00118 at 131.124 kb on + strand, within MPMX19_00118 at 131.124 kb on + strand, within MPMX19_00118 at 131.124 kb on + strand, within MPMX19_00118 at 131.178 kb on + strand, within MPMX19_00118 at 131.178 kb on + strand, within MPMX19_00118 at 131.178 kb on + strand, within MPMX19_00118 at 131.361 kb on + strand, within MPMX19_00118 at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.697 kb on + strand at 131.698 kb on - strand at 131.698 kb on - strand at 131.698 kb on - strand at 131.698 kb on - strand at 131.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 130,285 - +1.4 130,285 - -0.3 130,285 - -0.6 130,324 - +0.4 130,324 - -0.2 130,324 - +0.4 130,324 - -0.3 130,324 - +0.7 130,324 - -1.5 130,324 - -0.9 130,324 - +0.7 130,324 - +0.5 130,324 - +0.1 130,324 - +0.4 130,324 - -0.7 130,324 - -0.3 130,324 - +0.0 130,324 - -0.3 130,324 - -0.8 130,324 - +0.3 130,324 - -2.0 130,330 - -1.0 130,330 - -0.5 130,330 - -0.7 130,330 - -1.0 130,524 - +0.4 130,524 - -2.1 130,546 + -1.0 130,546 + +0.4 130,546 + +0.3 130,546 + -2.2 130,546 + +0.4 130,546 + +0.2 130,546 + +0.0 130,546 + +0.2 130,546 + -1.6 130,546 + -0.2 130,546 + +2.6 130,546 + -1.2 130,546 + -1.0 130,547 - +0.5 130,547 - -0.1 130,547 - +1.6 130,547 - -0.2 130,547 - +0.4 130,547 - -1.4 130,547 - -0.8 130,547 - +0.6 130,547 - -1.2 130,547 - -1.8 130,598 + -0.5 130,598 + +0.5 130,598 + +0.4 130,598 + +0.4 130,598 + -0.6 130,608 + -1.7 130,608 + -1.2 130,608 + -0.7 130,608 + -0.1 130,608 + +0.8 130,608 + +2.1 130,608 + -0.8 130,608 + -1.3 130,608 + -1.0 130,608 + +0.8 130,608 + -0.8 130,608 + +0.2 130,608 + -0.4 130,609 - -1.2 130,992 + MPMX19_00118 0.33 -1.2 130,992 + MPMX19_00118 0.33 +0.4 130,992 + MPMX19_00118 0.33 -0.3 130,992 + MPMX19_00118 0.33 +0.1 130,992 + MPMX19_00118 0.33 -1.1 130,992 + MPMX19_00118 0.33 -0.5 130,992 + MPMX19_00118 0.33 -0.6 130,992 + MPMX19_00118 0.33 -0.4 131,046 + MPMX19_00118 0.38 +0.4 131,046 + MPMX19_00118 0.38 -0.5 131,046 + MPMX19_00118 0.38 +2.0 131,046 + MPMX19_00118 0.38 -2.0 131,124 + MPMX19_00118 0.46 -1.7 131,124 + MPMX19_00118 0.46 -0.6 131,124 + MPMX19_00118 0.46 -0.4 131,124 + MPMX19_00118 0.46 +0.3 131,124 + MPMX19_00118 0.46 -1.5 131,124 + MPMX19_00118 0.46 -1.2 131,124 + MPMX19_00118 0.46 +1.4 131,178 + MPMX19_00118 0.51 -0.9 131,178 + MPMX19_00118 0.51 -1.8 131,178 + MPMX19_00118 0.51 -0.8 131,361 + MPMX19_00118 0.68 -2.1 131,697 + -0.1 131,697 + +1.3 131,697 + +0.0 131,697 + -2.5 131,697 + +0.3 131,697 + -3.4 131,697 + -2.2 131,697 + +0.1 131,697 + -0.8 131,697 + +1.5 131,697 + +1.6 131,697 + -0.0 131,697 + -0.9 131,697 + -0.3 131,697 + -0.3 131,697 + -0.5 131,697 + +0.4 131,697 + -1.1 131,697 + -1.1 131,697 + -1.5 131,697 + +0.6 131,697 + -1.3 131,697 + +0.5 131,697 + -1.0 131,698 - -0.4 131,698 - +1.6 131,698 - +0.6 131,698 - -0.7 131,698 - -0.7
Or see this region's nucleotide sequence