Strain Fitness in Pseudomonas sp. DMC3 around GFF799

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF798 and GFF799 are separated by 69 nucleotidesGFF799 and GFF800 overlap by 4 nucleotides GFF798 - Amidophosphoribosyltransferase, at 157,014 to 158,519 GFF798 GFF799 - O-succinylhomoserine sulfhydrylase, at 158,589 to 159,800 GFF799 GFF800 - Galactitol 2-dehydrogenase, at 159,797 to 160,573 GFF800 Position (kb) 158 159 160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 157.620 kb on + strand, within GFF798at 157.621 kb on - strand, within GFF798at 157.621 kb on - strand, within GFF798at 157.621 kb on - strand, within GFF798at 157.699 kb on + strand, within GFF798at 157.700 kb on - strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.701 kb on + strand, within GFF798at 157.702 kb on - strand, within GFF798at 157.702 kb on - strand, within GFF798at 157.824 kb on + strand, within GFF798at 157.825 kb on - strand, within GFF798at 157.995 kb on + strand, within GFF798at 157.995 kb on + strand, within GFF798at 157.996 kb on - strand, within GFF798at 157.996 kb on - strand, within GFF798at 158.181 kb on + strand, within GFF798at 158.181 kb on + strand, within GFF798at 158.223 kb on + strand, within GFF798at 158.223 kb on + strand, within GFF798at 158.223 kb on + strand, within GFF798at 158.224 kb on - strand, within GFF798at 158.224 kb on - strand, within GFF798at 158.224 kb on - strand, within GFF798at 158.317 kb on - strand, within GFF798at 158.317 kb on - strand, within GFF798at 158.403 kb on + strandat 158.403 kb on + strandat 158.403 kb on + strandat 158.403 kb on + strandat 158.404 kb on - strandat 158.404 kb on - strandat 158.508 kb on + strandat 158.508 kb on + strandat 158.551 kb on - strandat 158.558 kb on - strandat 158.561 kb on + strandat 158.561 kb on + strandat 158.561 kb on + strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.562 kb on - strandat 158.724 kb on + strand, within GFF799at 158.725 kb on - strand, within GFF799at 158.787 kb on + strand, within GFF799at 158.797 kb on - strand, within GFF799at 158.982 kb on + strand, within GFF799at 158.983 kb on - strand, within GFF799at 158.983 kb on - strand, within GFF799at 159.012 kb on + strand, within GFF799at 159.013 kb on - strand, within GFF799at 159.478 kb on - strand, within GFF799at 159.590 kb on + strand, within GFF799at 159.590 kb on + strand, within GFF799at 159.591 kb on - strand, within GFF799at 160.038 kb on + strand, within GFF800at 160.038 kb on + strand, within GFF800at 160.039 kb on - strand, within GFF800at 160.039 kb on - strand, within GFF800at 160.197 kb on - strand, within GFF800at 160.274 kb on + strand, within GFF800at 160.274 kb on + strand, within GFF800at 160.274 kb on + strand, within GFF800at 160.274 kb on + strand, within GFF800at 160.275 kb on - strand, within GFF800at 160.275 kb on - strand, within GFF800at 160.275 kb on - strand, within GFF800at 160.275 kb on - strand, within GFF800at 160.562 kb on + strandat 160.562 kb on + strandat 160.563 kb on - strandat 160.585 kb on + strandat 160.586 kb on - strandat 160.589 kb on + strandat 160.590 kb on - strandat 160.624 kb on - strandat 160.631 kb on + strandat 160.632 kb on - strandat 160.710 kb on - strandat 160.781 kb on + strandat 160.781 kb on + strandat 160.781 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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157,620 + GFF798 0.40 -1.3
157,621 - GFF798 0.40 -2.4
157,621 - GFF798 0.40 -2.2
157,621 - GFF798 0.40 -2.9
157,699 + GFF798 0.45 -2.6
157,700 - GFF798 0.46 -0.5
157,701 + GFF798 0.46 -4.0
157,701 + GFF798 0.46 -1.8
157,701 + GFF798 0.46 -2.4
157,701 + GFF798 0.46 -2.7
157,701 + GFF798 0.46 -0.5
157,701 + GFF798 0.46 -1.8
157,701 + GFF798 0.46 -2.0
157,701 + GFF798 0.46 -1.1
157,702 - GFF798 0.46 -3.1
157,702 - GFF798 0.46 -3.9
157,824 + GFF798 0.54 -3.2
157,825 - GFF798 0.54 -2.7
157,995 + GFF798 0.65 -2.6
157,995 + GFF798 0.65 -2.1
157,996 - GFF798 0.65 -2.3
157,996 - GFF798 0.65 -0.5
158,181 + GFF798 0.77 -2.3
158,181 + GFF798 0.77 -0.5
158,223 + GFF798 0.80 -1.8
158,223 + GFF798 0.80 -2.3
158,223 + GFF798 0.80 -1.5
158,224 - GFF798 0.80 -2.3
158,224 - GFF798 0.80 -3.0
158,224 - GFF798 0.80 -1.7
158,317 - GFF798 0.87 -2.5
158,317 - GFF798 0.87 -0.5
158,403 + -2.0
158,403 + -2.6
158,403 + -2.2
158,403 + -1.7
158,404 - -3.7
158,404 - -2.8
158,508 + -1.6
158,508 + -0.5
158,551 - +0.3
158,558 - +0.1
158,561 + -0.5
158,561 + -0.9
158,561 + -0.8
158,562 - +0.2
158,562 - -0.5
158,562 - +0.5
158,562 - -1.3
158,562 - -0.4
158,724 + GFF799 0.11 -0.2
158,725 - GFF799 0.11 -0.0
158,787 + GFF799 0.16 +0.5
158,797 - GFF799 0.17 +0.5
158,982 + GFF799 0.32 +0.1
158,983 - GFF799 0.33 -0.4
158,983 - GFF799 0.33 -0.0
159,012 + GFF799 0.35 -0.7
159,013 - GFF799 0.35 -0.2
159,478 - GFF799 0.73 -0.1
159,590 + GFF799 0.83 -2.3
159,590 + GFF799 0.83 +0.1
159,591 - GFF799 0.83 -0.7
160,038 + GFF800 0.31 +0.4
160,038 + GFF800 0.31 +0.9
160,039 - GFF800 0.31 -1.2
160,039 - GFF800 0.31 +0.1
160,197 - GFF800 0.51 +0.2
160,274 + GFF800 0.61 -0.5
160,274 + GFF800 0.61 -1.6
160,274 + GFF800 0.61 -0.2
160,274 + GFF800 0.61 +0.2
160,275 - GFF800 0.62 -0.5
160,275 - GFF800 0.62 -0.3
160,275 - GFF800 0.62 +0.4
160,275 - GFF800 0.62 +0.8
160,562 + +1.2
160,562 + -0.5
160,563 - +0.5
160,585 + -0.5
160,586 - +0.2
160,589 + -1.5
160,590 - -0.1
160,624 - +0.1
160,631 + -0.9
160,632 - -0.9
160,710 - -0.5
160,781 + -0.2
160,781 + +1.1
160,781 + -0.8

Or see this region's nucleotide sequence