Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5237 and GFF5238 are separated by 210 nucleotides GFF5238 and GFF5239 are separated by 21 nucleotides GFF5239 and GFF5240 are separated by 63 nucleotides GFF5240 and GFF5241 are separated by 2 nucleotides
GFF5237 - hypothetical protein, at 15,877 to 16,866
GFF5237
GFF5238 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 17,077 to 17,568
GFF5238
GFF5239 - Zinc transport protein ZntB, at 17,590 to 18,585
GFF5239
GFF5240 - hypothetical protein, at 18,649 to 18,897
GFF5240
GFF5241 - hypothetical protein, at 18,900 to 19,724
GFF5241
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.897 kb on - strand at 16.902 kb on - strand at 16.996 kb on + strand at 16.996 kb on + strand at 16.996 kb on + strand at 16.996 kb on + strand at 16.997 kb on - strand at 16.997 kb on - strand at 16.997 kb on - strand at 16.997 kb on - strand at 17.001 kb on + strand at 17.001 kb on + strand at 17.046 kb on - strand at 17.062 kb on + strand at 17.062 kb on + strand at 17.063 kb on - strand at 17.086 kb on + strand at 17.086 kb on + strand at 17.086 kb on + strand at 17.086 kb on + strand at 17.086 kb on + strand at 17.086 kb on + strand at 17.086 kb on + strand at 17.087 kb on - strand at 17.087 kb on - strand at 17.087 kb on - strand at 17.087 kb on - strand at 17.087 kb on - strand at 17.091 kb on + strand at 17.091 kb on + strand at 17.091 kb on + strand at 17.091 kb on + strand at 17.091 kb on + strand at 17.091 kb on + strand at 17.092 kb on - strand at 17.092 kb on - strand at 17.092 kb on - strand at 17.308 kb on - strand, within GFF5238 at 17.356 kb on + strand, within GFF5238 at 17.356 kb on + strand, within GFF5238 at 17.357 kb on - strand, within GFF5238 at 17.357 kb on - strand, within GFF5238 at 17.506 kb on + strand, within GFF5238 at 17.507 kb on - strand, within GFF5238 at 17.512 kb on + strand, within GFF5238 at 17.512 kb on + strand, within GFF5238 at 17.512 kb on + strand, within GFF5238 at 17.513 kb on - strand, within GFF5238 at 17.558 kb on + strand at 17.558 kb on + strand at 17.559 kb on - strand at 17.559 kb on - strand at 17.566 kb on + strand at 17.566 kb on + strand at 17.567 kb on - strand at 17.815 kb on - strand, within GFF5239 at 18.040 kb on + strand, within GFF5239 at 18.040 kb on + strand, within GFF5239 at 18.040 kb on + strand, within GFF5239 at 18.040 kb on + strand, within GFF5239 at 18.041 kb on - strand, within GFF5239 at 18.041 kb on - strand, within GFF5239 at 18.063 kb on + strand, within GFF5239 at 18.063 kb on + strand, within GFF5239 at 18.064 kb on - strand, within GFF5239 at 18.082 kb on - strand, within GFF5239 at 18.140 kb on - strand, within GFF5239 at 18.141 kb on + strand, within GFF5239 at 18.141 kb on + strand, within GFF5239 at 18.141 kb on + strand, within GFF5239 at 18.142 kb on - strand, within GFF5239 at 18.142 kb on - strand, within GFF5239 at 18.242 kb on + strand, within GFF5239 at 18.277 kb on + strand, within GFF5239 at 18.278 kb on - strand, within GFF5239 at 18.311 kb on - strand, within GFF5239 at 18.311 kb on - strand, within GFF5239 at 18.311 kb on - strand, within GFF5239 at 18.403 kb on + strand, within GFF5239 at 18.403 kb on + strand, within GFF5239 at 18.403 kb on + strand, within GFF5239 at 18.403 kb on + strand, within GFF5239 at 18.404 kb on - strand, within GFF5239 at 18.404 kb on - strand, within GFF5239 at 18.404 kb on - strand, within GFF5239 at 18.404 kb on - strand, within GFF5239 at 18.420 kb on + strand, within GFF5239 at 18.420 kb on + strand, within GFF5239 at 18.420 kb on + strand, within GFF5239 at 18.421 kb on - strand, within GFF5239 at 18.421 kb on - strand, within GFF5239 at 18.421 kb on - strand, within GFF5239 at 18.421 kb on - strand, within GFF5239 at 18.421 kb on - strand, within GFF5239 at 18.421 kb on - strand, within GFF5239 at 18.481 kb on - strand, within GFF5239 at 18.530 kb on + strand at 18.530 kb on + strand at 18.607 kb on + strand at 18.608 kb on - strand at 18.648 kb on + strand at 18.648 kb on + strand at 18.648 kb on + strand at 18.649 kb on - strand at 18.649 kb on - strand at 18.649 kb on - strand at 18.649 kb on - strand at 18.649 kb on - strand at 18.649 kb on - strand at 18.734 kb on + strand, within GFF5240 at 18.861 kb on + strand, within GFF5240 at 18.862 kb on - strand, within GFF5240 at 18.867 kb on + strand, within GFF5240 at 18.885 kb on + strand at 18.886 kb on - strand at 18.966 kb on - strand at 19.165 kb on - strand, within GFF5241 at 19.255 kb on - strand, within GFF5241 at 19.268 kb on - strand, within GFF5241 at 19.351 kb on + strand, within GFF5241 at 19.352 kb on - strand, within GFF5241 at 19.362 kb on + strand, within GFF5241 at 19.362 kb on + strand, within GFF5241 at 19.362 kb on + strand, within GFF5241 at 19.363 kb on - strand, within GFF5241 at 19.472 kb on + strand, within GFF5241 at 19.477 kb on + strand, within GFF5241 at 19.478 kb on - strand, within GFF5241 at 19.478 kb on - strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.561 kb on - strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.576 kb on - strand, within GFF5241 at 19.576 kb on - strand, within GFF5241 at 19.576 kb on - strand, within GFF5241 at 19.576 kb on - strand, within GFF5241
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 16,897 - -0.4 16,902 - +0.1 16,996 + +0.3 16,996 + -0.3 16,996 + -0.1 16,996 + +0.6 16,997 - -0.7 16,997 - -0.5 16,997 - -0.9 16,997 - +0.1 17,001 + -0.1 17,001 + -1.2 17,046 - -0.7 17,062 + +0.3 17,062 + -0.4 17,063 - +0.2 17,086 + +0.9 17,086 + -0.2 17,086 + +0.3 17,086 + -0.9 17,086 + -0.4 17,086 + +1.1 17,086 + -1.2 17,087 - +0.1 17,087 - -1.0 17,087 - -0.9 17,087 - -0.8 17,087 - +0.9 17,091 + -0.8 17,091 + -0.4 17,091 + -0.9 17,091 + +0.6 17,091 + +0.5 17,091 + -0.6 17,092 - -0.9 17,092 - +0.9 17,092 - -1.2 17,308 - GFF5238 0.47 +1.6 17,356 + GFF5238 0.57 -0.0 17,356 + GFF5238 0.57 +0.3 17,357 - GFF5238 0.57 +0.1 17,357 - GFF5238 0.57 -1.7 17,506 + GFF5238 0.87 +0.1 17,507 - GFF5238 0.87 +0.1 17,512 + GFF5238 0.88 +0.4 17,512 + GFF5238 0.88 -0.0 17,512 + GFF5238 0.88 +0.5 17,513 - GFF5238 0.89 +0.3 17,558 + -1.5 17,558 + -0.7 17,559 - -0.4 17,559 - -0.9 17,566 + -0.6 17,566 + -0.6 17,567 - +0.2 17,815 - GFF5239 0.23 -1.0 18,040 + GFF5239 0.45 -0.6 18,040 + GFF5239 0.45 +0.3 18,040 + GFF5239 0.45 -0.4 18,040 + GFF5239 0.45 +1.6 18,041 - GFF5239 0.45 +0.6 18,041 - GFF5239 0.45 -1.7 18,063 + GFF5239 0.47 +0.1 18,063 + GFF5239 0.47 +1.2 18,064 - GFF5239 0.48 -0.7 18,082 - GFF5239 0.49 -0.1 18,140 - GFF5239 0.55 -0.1 18,141 + GFF5239 0.55 +0.4 18,141 + GFF5239 0.55 -0.0 18,141 + GFF5239 0.55 +0.4 18,142 - GFF5239 0.55 -0.1 18,142 - GFF5239 0.55 +0.1 18,242 + GFF5239 0.65 -0.0 18,277 + GFF5239 0.69 -0.3 18,278 - GFF5239 0.69 +0.5 18,311 - GFF5239 0.72 +0.3 18,311 - GFF5239 0.72 -1.1 18,311 - GFF5239 0.72 +0.3 18,403 + GFF5239 0.82 +0.4 18,403 + GFF5239 0.82 +0.0 18,403 + GFF5239 0.82 -2.2 18,403 + GFF5239 0.82 +0.9 18,404 - GFF5239 0.82 +0.2 18,404 - GFF5239 0.82 -0.2 18,404 - GFF5239 0.82 -0.5 18,404 - GFF5239 0.82 +0.3 18,420 + GFF5239 0.83 -0.6 18,420 + GFF5239 0.83 +1.1 18,420 + GFF5239 0.83 -0.2 18,421 - GFF5239 0.83 +0.3 18,421 - GFF5239 0.83 +1.1 18,421 - GFF5239 0.83 +0.7 18,421 - GFF5239 0.83 -0.8 18,421 - GFF5239 0.83 +0.6 18,421 - GFF5239 0.83 -0.0 18,481 - GFF5239 0.89 -0.9 18,530 + +0.1 18,530 + +0.1 18,607 + +1.6 18,608 - -0.1 18,648 + -0.7 18,648 + +0.1 18,648 + +1.1 18,649 - -0.5 18,649 - -0.8 18,649 - -1.4 18,649 - -0.7 18,649 - +0.6 18,649 - +1.3 18,734 + GFF5240 0.34 -0.7 18,861 + GFF5240 0.85 -0.2 18,862 - GFF5240 0.86 -1.2 18,867 + GFF5240 0.88 -0.5 18,885 + +0.1 18,886 - -2.4 18,966 - -0.9 19,165 - GFF5241 0.32 +0.1 19,255 - GFF5241 0.43 -0.1 19,268 - GFF5241 0.45 +0.6 19,351 + GFF5241 0.55 -0.4 19,352 - GFF5241 0.55 -0.2 19,362 + GFF5241 0.56 +0.9 19,362 + GFF5241 0.56 +1.3 19,362 + GFF5241 0.56 +0.4 19,363 - GFF5241 0.56 +0.0 19,472 + GFF5241 0.69 +1.0 19,477 + GFF5241 0.70 -0.7 19,478 - GFF5241 0.70 -0.4 19,478 - GFF5241 0.70 -0.8 19,560 + GFF5241 0.80 +0.8 19,560 + GFF5241 0.80 -0.4 19,560 + GFF5241 0.80 -0.9 19,560 + GFF5241 0.80 +0.1 19,560 + GFF5241 0.80 +0.8 19,560 + GFF5241 0.80 -0.0 19,560 + GFF5241 0.80 -0.7 19,560 + GFF5241 0.80 -0.5 19,560 + GFF5241 0.80 -1.7 19,560 + GFF5241 0.80 -0.1 19,561 - GFF5241 0.80 -0.7 19,575 + GFF5241 0.82 -1.4 19,575 + GFF5241 0.82 -0.7 19,575 + GFF5241 0.82 -0.5 19,575 + GFF5241 0.82 +0.3 19,576 - GFF5241 0.82 -0.9 19,576 - GFF5241 0.82 -0.4 19,576 - GFF5241 0.82 +0.8 19,576 - GFF5241 0.82 -0.9
Or see this region's nucleotide sequence