Strain Fitness in Pseudomonas sp. DMC3 around GFF440

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF439 and GFF440 overlap by 62 nucleotidesGFF440 and GFF441 are separated by 18 nucleotides GFF439 - hypothetical protein, at 481,770 to 482,387 GFF439 GFF440 - hypothetical protein, at 482,326 to 485,463 GFF440 GFF441 - hypothetical protein, at 485,482 to 486,501 GFF441 Position (kb) 482 483 484 485 486Strain fitness (log2 ratio) -2 -1 0 1at 481.584 kb on - strandat 481.698 kb on + strandat 482.422 kb on - strandat 482.586 kb on - strandat 482.832 kb on + strand, within GFF440at 482.832 kb on + strand, within GFF440at 482.833 kb on - strand, within GFF440at 482.876 kb on - strand, within GFF440at 483.122 kb on - strand, within GFF440at 483.205 kb on - strand, within GFF440at 483.260 kb on + strand, within GFF440at 483.260 kb on + strand, within GFF440at 483.374 kb on - strand, within GFF440at 483.484 kb on - strand, within GFF440at 483.570 kb on + strand, within GFF440at 483.570 kb on + strand, within GFF440at 483.572 kb on + strand, within GFF440at 483.573 kb on - strand, within GFF440at 483.573 kb on - strand, within GFF440at 483.643 kb on - strand, within GFF440at 483.827 kb on - strand, within GFF440at 483.855 kb on + strand, within GFF440at 483.856 kb on - strand, within GFF440at 483.860 kb on - strand, within GFF440at 483.905 kb on + strand, within GFF440at 484.016 kb on + strand, within GFF440at 484.074 kb on + strand, within GFF440at 484.113 kb on + strand, within GFF440at 484.141 kb on + strand, within GFF440at 484.201 kb on + strand, within GFF440at 484.202 kb on - strand, within GFF440at 484.203 kb on + strand, within GFF440at 484.203 kb on + strand, within GFF440at 484.292 kb on + strand, within GFF440at 484.351 kb on + strand, within GFF440at 484.352 kb on - strand, within GFF440at 484.363 kb on - strand, within GFF440at 484.545 kb on - strand, within GFF440at 484.689 kb on + strand, within GFF440at 484.761 kb on + strand, within GFF440at 484.952 kb on - strand, within GFF440at 485.041 kb on - strand, within GFF440at 485.068 kb on - strand, within GFF440at 485.127 kb on - strand, within GFF440at 485.145 kb on + strand, within GFF440at 485.415 kb on + strandat 485.422 kb on - strandat 485.422 kb on - strandat 485.492 kb on + strandat 485.523 kb on + strandat 485.582 kb on + strandat 485.813 kb on - strand, within GFF441at 485.813 kb on - strand, within GFF441at 485.813 kb on - strand, within GFF441at 485.813 kb on - strand, within GFF441at 485.813 kb on - strand, within GFF441at 485.884 kb on - strand, within GFF441at 485.914 kb on + strand, within GFF441at 485.914 kb on + strand, within GFF441at 485.914 kb on + strand, within GFF441at 485.914 kb on + strand, within GFF441at 485.915 kb on - strand, within GFF441at 485.915 kb on - strand, within GFF441at 485.915 kb on - strand, within GFF441at 485.918 kb on + strand, within GFF441at 485.918 kb on + strand, within GFF441at 485.919 kb on - strand, within GFF441at 485.919 kb on - strand, within GFF441at 485.919 kb on - strand, within GFF441at 485.977 kb on + strand, within GFF441at 486.138 kb on + strand, within GFF441at 486.138 kb on + strand, within GFF441at 486.138 kb on + strand, within GFF441at 486.139 kb on - strand, within GFF441at 486.141 kb on + strand, within GFF441at 486.141 kb on + strand, within GFF441at 486.142 kb on - strand, within GFF441at 486.142 kb on - strand, within GFF441at 486.154 kb on - strand, within GFF441at 486.220 kb on + strand, within GFF441at 486.245 kb on - strand, within GFF441at 486.255 kb on + strand, within GFF441at 486.255 kb on + strand, within GFF441at 486.256 kb on - strand, within GFF441at 486.256 kb on - strand, within GFF441at 486.256 kb on - strand, within GFF441at 486.256 kb on - strand, within GFF441at 486.256 kb on - strand, within GFF441at 486.258 kb on + strand, within GFF441at 486.258 kb on + strand, within GFF441at 486.259 kb on - strand, within GFF441at 486.259 kb on - strand, within GFF441at 486.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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481,584 - -1.3
481,698 + -0.7
482,422 - -1.1
482,586 - +0.5
482,832 + GFF440 0.16 +0.2
482,832 + GFF440 0.16 +0.2
482,833 - GFF440 0.16 -0.0
482,876 - GFF440 0.18 +0.9
483,122 - GFF440 0.25 -1.3
483,205 - GFF440 0.28 -0.5
483,260 + GFF440 0.30 +0.9
483,260 + GFF440 0.30 -0.8
483,374 - GFF440 0.33 +0.1
483,484 - GFF440 0.37 +0.5
483,570 + GFF440 0.40 -0.6
483,570 + GFF440 0.40 +0.3
483,572 + GFF440 0.40 +0.3
483,573 - GFF440 0.40 +0.5
483,573 - GFF440 0.40 -0.1
483,643 - GFF440 0.42 -1.0
483,827 - GFF440 0.48 -0.6
483,855 + GFF440 0.49 -0.3
483,856 - GFF440 0.49 -0.5
483,860 - GFF440 0.49 -0.2
483,905 + GFF440 0.50 -1.5
484,016 + GFF440 0.54 -0.4
484,074 + GFF440 0.56 -0.5
484,113 + GFF440 0.57 +0.7
484,141 + GFF440 0.58 +0.3
484,201 + GFF440 0.60 +0.3
484,202 - GFF440 0.60 -0.1
484,203 + GFF440 0.60 +0.2
484,203 + GFF440 0.60 -0.7
484,292 + GFF440 0.63 -0.3
484,351 + GFF440 0.65 +0.2
484,352 - GFF440 0.65 -0.9
484,363 - GFF440 0.65 -0.5
484,545 - GFF440 0.71 +1.5
484,689 + GFF440 0.75 +1.6
484,761 + GFF440 0.78 +0.3
484,952 - GFF440 0.84 +0.5
485,041 - GFF440 0.87 +0.2
485,068 - GFF440 0.87 -0.0
485,127 - GFF440 0.89 +0.3
485,145 + GFF440 0.90 -1.2
485,415 + +0.5
485,422 - -0.7
485,422 - -0.2
485,492 + +0.5
485,523 + -0.2
485,582 + +1.0
485,813 - GFF441 0.32 -0.2
485,813 - GFF441 0.32 +1.2
485,813 - GFF441 0.32 -0.0
485,813 - GFF441 0.32 +0.0
485,813 - GFF441 0.32 -1.9
485,884 - GFF441 0.39 -0.7
485,914 + GFF441 0.42 -0.1
485,914 + GFF441 0.42 -0.7
485,914 + GFF441 0.42 -0.8
485,914 + GFF441 0.42 -0.6
485,915 - GFF441 0.42 -0.1
485,915 - GFF441 0.42 +0.1
485,915 - GFF441 0.42 +0.1
485,918 + GFF441 0.43 +0.4
485,918 + GFF441 0.43 -0.6
485,919 - GFF441 0.43 +0.1
485,919 - GFF441 0.43 -0.5
485,919 - GFF441 0.43 -0.6
485,977 + GFF441 0.49 -0.5
486,138 + GFF441 0.64 -0.5
486,138 + GFF441 0.64 +1.2
486,138 + GFF441 0.64 +0.1
486,139 - GFF441 0.64 +0.0
486,141 + GFF441 0.65 -0.9
486,141 + GFF441 0.65 -1.1
486,142 - GFF441 0.65 -1.5
486,142 - GFF441 0.65 -0.1
486,154 - GFF441 0.66 -1.0
486,220 + GFF441 0.72 -0.5
486,245 - GFF441 0.75 -0.3
486,255 + GFF441 0.76 +0.2
486,255 + GFF441 0.76 +1.2
486,256 - GFF441 0.76 -0.0
486,256 - GFF441 0.76 -0.1
486,256 - GFF441 0.76 -0.1
486,256 - GFF441 0.76 +0.9
486,256 - GFF441 0.76 +0.2
486,258 + GFF441 0.76 -0.8
486,258 + GFF441 0.76 +0.3
486,259 - GFF441 0.76 -0.8
486,259 - GFF441 0.76 -0.7
486,416 + -1.1

Or see this region's nucleotide sequence