Strain Fitness in Pseudomonas sp. DMC3 around GFF4222

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4221 and GFF4222 are separated by 51 nucleotidesGFF4222 and GFF4223 are separated by 200 nucleotidesGFF4223 and GFF4224 are separated by 1 nucleotides GFF4221 - Sigma54-dependent transcriptional activator SfnR, at 193,064 to 193,996 GFF4221 GFF4222 - hypothetical protein, at 194,048 to 194,629 GFF4222 GFF4223 - Biopolymer transport protein ExbD, at 194,830 to 195,231 GFF4223 GFF4224 - Tol-Pal system protein TolQ, at 195,233 to 195,958 GFF4224 Position (kb) 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 193.109 kb on - strandat 193.123 kb on + strandat 193.123 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.130 kb on + strandat 193.131 kb on - strandat 193.131 kb on - strandat 193.131 kb on - strandat 193.131 kb on - strandat 193.131 kb on - strandat 193.132 kb on + strandat 193.295 kb on + strand, within GFF4221at 193.295 kb on + strand, within GFF4221at 193.295 kb on + strand, within GFF4221at 193.296 kb on - strand, within GFF4221at 193.296 kb on - strand, within GFF4221at 193.350 kb on + strand, within GFF4221at 193.351 kb on - strand, within GFF4221at 193.365 kb on + strand, within GFF4221at 193.366 kb on - strand, within GFF4221at 193.366 kb on - strand, within GFF4221at 193.437 kb on + strand, within GFF4221at 193.437 kb on + strand, within GFF4221at 193.437 kb on + strand, within GFF4221at 193.438 kb on - strand, within GFF4221at 193.438 kb on - strand, within GFF4221at 193.444 kb on - strand, within GFF4221at 193.444 kb on - strand, within GFF4221at 193.444 kb on - strand, within GFF4221at 193.626 kb on + strand, within GFF4221at 193.626 kb on + strand, within GFF4221at 193.627 kb on - strand, within GFF4221at 193.686 kb on + strand, within GFF4221at 193.686 kb on + strand, within GFF4221at 193.687 kb on - strand, within GFF4221at 193.725 kb on + strand, within GFF4221at 193.725 kb on + strand, within GFF4221at 193.725 kb on + strand, within GFF4221at 193.792 kb on + strand, within GFF4221at 193.793 kb on - strand, within GFF4221at 194.040 kb on + strandat 194.040 kb on + strandat 194.040 kb on + strandat 194.040 kb on + strandat 194.040 kb on + strandat 194.040 kb on + strandat 194.041 kb on - strandat 194.043 kb on + strandat 194.043 kb on + strandat 194.043 kb on + strandat 194.044 kb on - strandat 194.044 kb on - strandat 194.044 kb on - strandat 194.095 kb on - strandat 194.095 kb on - strandat 194.100 kb on + strandat 194.100 kb on + strandat 194.100 kb on + strandat 194.100 kb on + strandat 194.100 kb on + strandat 194.100 kb on + strandat 194.101 kb on - strandat 194.370 kb on + strand, within GFF4222at 194.371 kb on - strand, within GFF4222at 194.371 kb on - strand, within GFF4222at 194.607 kb on + strandat 194.667 kb on + strandat 194.669 kb on + strandat 194.669 kb on + strandat 194.669 kb on + strandat 194.669 kb on + strandat 194.669 kb on + strandat 194.669 kb on + strandat 194.670 kb on - strandat 194.670 kb on - strandat 194.670 kb on - strandat 194.670 kb on - strandat 194.670 kb on - strandat 194.670 kb on - strandat 194.670 kb on - strandat 194.670 kb on - strandat 194.842 kb on - strandat 194.907 kb on - strand, within GFF4223at 195.015 kb on + strand, within GFF4223at 195.138 kb on + strand, within GFF4223at 195.333 kb on + strand, within GFF4224at 195.333 kb on + strand, within GFF4224at 195.334 kb on - strand, within GFF4224at 195.334 kb on - strand, within GFF4224at 195.393 kb on + strand, within GFF4224at 195.394 kb on - strand, within GFF4224at 195.394 kb on - strand, within GFF4224at 195.400 kb on - strand, within GFF4224at 195.400 kb on - strand, within GFF4224at 195.400 kb on - strand, within GFF4224at 195.400 kb on - strand, within GFF4224

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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193,109 - -0.7
193,123 + +0.4
193,123 + +0.3
193,130 + -2.4
193,130 + +0.9
193,130 + -1.8
193,130 + -0.3
193,130 + -0.1
193,130 + +0.5
193,130 + -0.4
193,130 + +0.6
193,130 + +0.2
193,130 + -0.9
193,130 + -0.1
193,130 + -1.9
193,130 + -0.9
193,130 + -0.1
193,131 - -0.9
193,131 - +0.5
193,131 - -2.2
193,131 - -1.1
193,131 - -0.5
193,132 + +0.1
193,295 + GFF4221 0.25 +0.4
193,295 + GFF4221 0.25 +0.2
193,295 + GFF4221 0.25 +0.5
193,296 - GFF4221 0.25 +0.4
193,296 - GFF4221 0.25 +0.1
193,350 + GFF4221 0.31 -1.8
193,351 - GFF4221 0.31 -0.0
193,365 + GFF4221 0.32 +0.7
193,366 - GFF4221 0.32 +0.9
193,366 - GFF4221 0.32 +0.1
193,437 + GFF4221 0.40 -0.5
193,437 + GFF4221 0.40 -1.0
193,437 + GFF4221 0.40 +0.6
193,438 - GFF4221 0.40 -0.6
193,438 - GFF4221 0.40 -1.2
193,444 - GFF4221 0.41 -1.8
193,444 - GFF4221 0.41 -0.5
193,444 - GFF4221 0.41 -0.6
193,626 + GFF4221 0.60 +0.1
193,626 + GFF4221 0.60 -0.6
193,627 - GFF4221 0.60 -0.1
193,686 + GFF4221 0.67 -0.4
193,686 + GFF4221 0.67 -0.7
193,687 - GFF4221 0.67 -0.2
193,725 + GFF4221 0.71 -0.9
193,725 + GFF4221 0.71 -0.9
193,725 + GFF4221 0.71 -0.9
193,792 + GFF4221 0.78 +0.0
193,793 - GFF4221 0.78 +0.5
194,040 + -0.3
194,040 + +0.4
194,040 + -0.6
194,040 + -0.2
194,040 + +0.1
194,040 + -1.0
194,041 - -0.7
194,043 + +1.1
194,043 + -1.5
194,043 + -1.2
194,044 - -0.0
194,044 - +1.1
194,044 - +0.5
194,095 - -0.0
194,095 - +0.8
194,100 + +0.0
194,100 + -0.2
194,100 + -0.5
194,100 + -0.3
194,100 + -0.2
194,100 + -0.1
194,101 - +0.9
194,370 + GFF4222 0.55 -0.3
194,371 - GFF4222 0.55 +0.1
194,371 - GFF4222 0.55 +0.3
194,607 + +0.5
194,667 + +1.3
194,669 + -0.5
194,669 + -0.1
194,669 + -1.3
194,669 + +0.8
194,669 + -0.3
194,669 + -0.6
194,670 - +1.1
194,670 - -0.1
194,670 - -0.5
194,670 - +0.7
194,670 - +0.5
194,670 - +0.2
194,670 - -0.5
194,670 - +1.0
194,842 - +0.4
194,907 - GFF4223 0.19 -1.3
195,015 + GFF4223 0.46 -0.1
195,138 + GFF4223 0.77 +1.1
195,333 + GFF4224 0.14 -0.3
195,333 + GFF4224 0.14 -0.8
195,334 - GFF4224 0.14 +0.4
195,334 - GFF4224 0.14 +1.9
195,393 + GFF4224 0.22 -0.3
195,394 - GFF4224 0.22 -1.5
195,394 - GFF4224 0.22 -0.1
195,400 - GFF4224 0.23 -0.4
195,400 - GFF4224 0.23 +1.1
195,400 - GFF4224 0.23 -0.5
195,400 - GFF4224 0.23 +0.2

Or see this region's nucleotide sequence