Strain Fitness in Pseudomonas sp. DMC3 around GFF239

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF236 and GFF237 are separated by 145 nucleotidesGFF237 and GFF238 are separated by 151 nucleotidesGFF238 and GFF239 are separated by 56 nucleotidesGFF239 and GFF240 are separated by 12 nucleotides GFF236 - Phosphopantetheine adenylyltransferase, at 264,084 to 264,563 GFF236 GFF237 - Ferredoxin, at 264,709 to 264,960 GFF237 GFF238 - hypothetical protein, at 265,112 to 265,435 GFF238 GFF239 - Formamidopyrimidine-DNA glycosylase, at 265,492 to 266,304 GFF239 GFF240 - hypothetical protein, at 266,317 to 267,183 GFF240 Position (kb) 265 266 267Strain fitness (log2 ratio) -2 -1 0 1at 264.561 kb on + strandat 264.672 kb on + strandat 264.672 kb on + strandat 264.934 kb on + strand, within GFF237at 264.934 kb on + strand, within GFF237at 264.977 kb on - strandat 265.344 kb on + strand, within GFF238at 265.345 kb on - strand, within GFF238at 265.345 kb on - strand, within GFF238at 265.461 kb on - strandat 265.473 kb on + strandat 265.473 kb on + strandat 265.475 kb on + strandat 265.475 kb on + strandat 265.475 kb on + strandat 265.476 kb on - strandat 265.476 kb on - strandat 265.593 kb on - strand, within GFF239at 265.616 kb on + strand, within GFF239at 265.719 kb on - strand, within GFF239at 265.790 kb on + strand, within GFF239at 265.791 kb on - strand, within GFF239at 265.791 kb on - strand, within GFF239at 265.794 kb on + strand, within GFF239at 265.794 kb on + strand, within GFF239at 265.795 kb on - strand, within GFF239at 266.082 kb on + strand, within GFF239at 266.083 kb on - strand, within GFF239at 266.083 kb on - strand, within GFF239at 266.083 kb on - strand, within GFF239at 266.130 kb on - strand, within GFF239at 266.130 kb on - strand, within GFF239at 266.366 kb on + strandat 266.367 kb on - strandat 266.384 kb on + strandat 266.384 kb on + strandat 266.385 kb on - strandat 266.385 kb on - strandat 266.385 kb on - strandat 266.451 kb on - strand, within GFF240at 266.606 kb on + strand, within GFF240at 266.606 kb on + strand, within GFF240at 266.606 kb on + strand, within GFF240at 266.607 kb on - strand, within GFF240at 266.607 kb on - strand, within GFF240at 266.609 kb on + strand, within GFF240at 266.711 kb on + strand, within GFF240at 266.711 kb on + strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.771 kb on + strand, within GFF240at 266.772 kb on - strand, within GFF240at 266.772 kb on - strand, within GFF240at 266.972 kb on + strand, within GFF240at 266.987 kb on + strand, within GFF240at 266.987 kb on + strand, within GFF240at 266.987 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.183 kb on + strandat 267.183 kb on + strandat 267.183 kb on + strandat 267.183 kb on + strandat 267.183 kb on + strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.215 kb on - strandat 267.292 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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264,561 + +0.0
264,672 + -0.6
264,672 + -0.8
264,934 + GFF237 0.89 +0.5
264,934 + GFF237 0.89 -0.6
264,977 - -1.3
265,344 + GFF238 0.72 -1.6
265,345 - GFF238 0.72 -0.3
265,345 - GFF238 0.72 -0.4
265,461 - -0.3
265,473 + -0.7
265,473 + +1.2
265,475 + -0.2
265,475 + +0.1
265,475 + +0.2
265,476 - -0.6
265,476 - -0.4
265,593 - GFF239 0.12 -0.5
265,616 + GFF239 0.15 +1.1
265,719 - GFF239 0.28 +0.2
265,790 + GFF239 0.37 -0.2
265,791 - GFF239 0.37 -1.4
265,791 - GFF239 0.37 +0.1
265,794 + GFF239 0.37 +0.4
265,794 + GFF239 0.37 +0.9
265,795 - GFF239 0.37 -0.9
266,082 + GFF239 0.73 +0.4
266,083 - GFF239 0.73 +0.2
266,083 - GFF239 0.73 -0.3
266,083 - GFF239 0.73 +0.6
266,130 - GFF239 0.78 +0.5
266,130 - GFF239 0.78 -1.0
266,366 + -0.6
266,367 - +0.5
266,384 + +0.2
266,384 + -0.5
266,385 - +0.0
266,385 - +0.1
266,385 - +0.0
266,451 - GFF240 0.15 -0.8
266,606 + GFF240 0.33 +0.2
266,606 + GFF240 0.33 -0.4
266,606 + GFF240 0.33 +0.8
266,607 - GFF240 0.33 +1.0
266,607 - GFF240 0.33 -1.0
266,609 + GFF240 0.34 +0.2
266,711 + GFF240 0.45 -0.4
266,711 + GFF240 0.45 +0.1
266,712 - GFF240 0.46 -1.1
266,712 - GFF240 0.46 -1.0
266,712 - GFF240 0.46 +0.6
266,712 - GFF240 0.46 +0.1
266,771 + GFF240 0.52 -0.1
266,772 - GFF240 0.52 -0.8
266,772 - GFF240 0.52 +0.8
266,972 + GFF240 0.76 +0.8
266,987 + GFF240 0.77 -0.5
266,987 + GFF240 0.77 -0.4
266,987 + GFF240 0.77 -0.0
267,083 + GFF240 0.88 -0.3
267,083 + GFF240 0.88 -1.9
267,083 + GFF240 0.88 -1.4
267,083 + GFF240 0.88 +0.1
267,084 - GFF240 0.88 -2.1
267,084 - GFF240 0.88 -0.0
267,084 - GFF240 0.88 +0.1
267,084 - GFF240 0.88 +0.5
267,084 - GFF240 0.88 +0.2
267,084 - GFF240 0.88 -0.4
267,183 + -0.7
267,183 + -0.6
267,183 + -0.1
267,183 + +1.2
267,183 + -0.8
267,184 - -1.5
267,184 - +0.7
267,184 - +0.2
267,184 - +0.5
267,184 - -0.9
267,184 - +0.5
267,184 - -0.7
267,187 + -1.9
267,187 + -0.8
267,187 + +0.0
267,187 + -1.2
267,187 + -0.4
267,187 + -0.8
267,187 + -0.9
267,187 + +0.0
267,188 - -0.5
267,188 - +0.6
267,188 - -0.1
267,188 - +0.5
267,188 - +0.2
267,188 - +0.1
267,188 - -0.1
267,215 - +1.7
267,292 + +0.2

Or see this region's nucleotide sequence