Strain Fitness in Pseudomonas sp. DMC3 around GFF230

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF228 and GFF229 overlap by 1 nucleotidesGFF229 and GFF230 are separated by 65 nucleotidesGFF230 and GFF231 are separated by 119 nucleotides GFF228 - hypothetical protein, at 255,246 to 256,736 GFF228 GFF229 - Ribosomal RNA small subunit methyltransferase D, at 256,736 to 257,350 GFF229 GFF230 - hypothetical protein, at 257,416 to 258,411 GFF230 GFF231 - Putative thiosulfate sulfurtransferase SseB, at 258,531 to 259,385 GFF231 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.533 kb on + strand, within GFF228at 256.533 kb on + strand, within GFF228at 256.533 kb on + strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.534 kb on - strand, within GFF228at 256.536 kb on - strand, within GFF228at 256.551 kb on + strand, within GFF228at 256.551 kb on + strand, within GFF228at 256.682 kb on - strandat 256.697 kb on + strandat 256.734 kb on + strandat 256.734 kb on + strandat 256.907 kb on + strand, within GFF229at 256.907 kb on + strand, within GFF229at 256.907 kb on + strand, within GFF229at 257.179 kb on + strand, within GFF229at 257.180 kb on - strand, within GFF229at 257.180 kb on - strand, within GFF229at 257.225 kb on + strand, within GFF229at 257.226 kb on - strand, within GFF229at 257.226 kb on - strand, within GFF229at 257.312 kb on + strandat 257.402 kb on + strandat 257.644 kb on + strand, within GFF230at 257.644 kb on + strand, within GFF230at 257.644 kb on + strand, within GFF230at 257.645 kb on - strand, within GFF230at 257.645 kb on - strand, within GFF230at 257.746 kb on + strand, within GFF230at 257.746 kb on + strand, within GFF230at 257.746 kb on + strand, within GFF230at 257.747 kb on - strand, within GFF230at 257.747 kb on - strand, within GFF230at 257.821 kb on + strand, within GFF230at 257.974 kb on + strand, within GFF230at 257.974 kb on + strand, within GFF230at 257.974 kb on + strand, within GFF230at 257.975 kb on - strand, within GFF230at 258.007 kb on + strand, within GFF230at 258.008 kb on - strand, within GFF230at 258.008 kb on - strand, within GFF230at 258.008 kb on - strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.099 kb on + strand, within GFF230at 258.100 kb on - strand, within GFF230at 258.100 kb on - strand, within GFF230at 258.163 kb on + strand, within GFF230at 258.163 kb on + strand, within GFF230at 258.164 kb on - strand, within GFF230at 258.164 kb on - strand, within GFF230at 258.188 kb on - strand, within GFF230at 258.190 kb on + strand, within GFF230at 258.190 kb on + strand, within GFF230at 258.190 kb on + strand, within GFF230at 258.191 kb on - strand, within GFF230at 258.191 kb on - strand, within GFF230at 258.361 kb on + strandat 258.364 kb on + strandat 258.364 kb on + strandat 258.364 kb on + strandat 258.364 kb on + strandat 258.365 kb on - strandat 258.365 kb on - strandat 258.365 kb on - strandat 258.429 kb on + strandat 258.429 kb on + strandat 258.430 kb on - strandat 258.430 kb on - strandat 258.533 kb on - strandat 258.593 kb on - strandat 258.797 kb on + strand, within GFF231at 258.797 kb on + strand, within GFF231at 258.798 kb on - strand, within GFF231at 259.029 kb on + strand, within GFF231at 259.081 kb on + strand, within GFF231at 259.081 kb on + strand, within GFF231at 259.102 kb on + strand, within GFF231at 259.103 kb on - strand, within GFF231at 259.103 kb on - strand, within GFF231at 259.103 kb on - strand, within GFF231at 259.215 kb on + strand, within GFF231at 259.215 kb on + strand, within GFF231at 259.215 kb on + strand, within GFF231at 259.215 kb on + strand, within GFF231at 259.215 kb on + strand, within GFF231at 259.215 kb on + strand, within GFF231at 259.216 kb on - strand, within GFF231at 259.216 kb on - strand, within GFF231at 259.216 kb on - strand, within GFF231at 259.268 kb on - strand, within GFF231at 259.283 kb on - strand, within GFF231

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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256,533 + GFF228 0.86 -0.6
256,533 + GFF228 0.86 -1.0
256,533 + GFF228 0.86 -0.5
256,534 - GFF228 0.86 -0.2
256,534 - GFF228 0.86 -0.9
256,534 - GFF228 0.86 +0.7
256,534 - GFF228 0.86 -0.6
256,536 - GFF228 0.87 -0.1
256,551 + GFF228 0.88 +0.3
256,551 + GFF228 0.88 -0.8
256,682 - -0.2
256,697 + +0.8
256,734 + +1.1
256,734 + +0.3
256,907 + GFF229 0.28 -0.7
256,907 + GFF229 0.28 +0.4
256,907 + GFF229 0.28 -1.2
257,179 + GFF229 0.72 +0.2
257,180 - GFF229 0.72 +0.6
257,180 - GFF229 0.72 +1.0
257,225 + GFF229 0.80 -1.6
257,226 - GFF229 0.80 -1.4
257,226 - GFF229 0.80 -0.5
257,312 + +0.1
257,402 + +0.2
257,644 + GFF230 0.23 -0.4
257,644 + GFF230 0.23 -0.7
257,644 + GFF230 0.23 -0.3
257,645 - GFF230 0.23 -0.1
257,645 - GFF230 0.23 -1.0
257,746 + GFF230 0.33 -0.4
257,746 + GFF230 0.33 +0.3
257,746 + GFF230 0.33 +0.4
257,747 - GFF230 0.33 -0.1
257,747 - GFF230 0.33 -0.9
257,821 + GFF230 0.41 +0.2
257,974 + GFF230 0.56 -0.5
257,974 + GFF230 0.56 -1.2
257,974 + GFF230 0.56 -0.5
257,975 - GFF230 0.56 +0.5
258,007 + GFF230 0.59 +1.2
258,008 - GFF230 0.59 +0.2
258,008 - GFF230 0.59 -0.8
258,008 - GFF230 0.59 +0.0
258,099 + GFF230 0.69 +0.1
258,099 + GFF230 0.69 +0.6
258,099 + GFF230 0.69 +0.6
258,099 + GFF230 0.69 +0.7
258,099 + GFF230 0.69 -1.6
258,099 + GFF230 0.69 -0.9
258,099 + GFF230 0.69 +0.2
258,099 + GFF230 0.69 -0.2
258,100 - GFF230 0.69 -0.4
258,100 - GFF230 0.69 +1.2
258,163 + GFF230 0.75 +0.4
258,163 + GFF230 0.75 +0.7
258,164 - GFF230 0.75 -2.4
258,164 - GFF230 0.75 +0.5
258,188 - GFF230 0.78 -0.6
258,190 + GFF230 0.78 -0.8
258,190 + GFF230 0.78 +0.4
258,190 + GFF230 0.78 -0.2
258,191 - GFF230 0.78 +0.3
258,191 - GFF230 0.78 -0.3
258,361 + -0.1
258,364 + -0.2
258,364 + -0.2
258,364 + -0.9
258,364 + +0.8
258,365 - -0.3
258,365 - -0.6
258,365 - +1.6
258,429 + -2.5
258,429 + -0.6
258,430 - +0.6
258,430 - -0.1
258,533 - +0.3
258,593 - +0.1
258,797 + GFF231 0.31 +0.4
258,797 + GFF231 0.31 -0.1
258,798 - GFF231 0.31 +0.0
259,029 + GFF231 0.58 +0.2
259,081 + GFF231 0.64 -0.9
259,081 + GFF231 0.64 +0.8
259,102 + GFF231 0.67 -0.9
259,103 - GFF231 0.67 -0.9
259,103 - GFF231 0.67 -2.5
259,103 - GFF231 0.67 -0.7
259,215 + GFF231 0.80 +0.4
259,215 + GFF231 0.80 +1.8
259,215 + GFF231 0.80 -0.3
259,215 + GFF231 0.80 -0.6
259,215 + GFF231 0.80 -1.0
259,215 + GFF231 0.80 +0.2
259,216 - GFF231 0.80 +0.3
259,216 - GFF231 0.80 -0.9
259,216 - GFF231 0.80 +0.1
259,268 - GFF231 0.86 +0.8
259,283 - GFF231 0.88 +0.0

Or see this region's nucleotide sequence