Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1998 and GFF1999 are separated by 403 nucleotides GFF1999 and GFF2000 are separated by 177 nucleotides GFF2000 and GFF2001 are separated by 125 nucleotides GFF2001 and GFF2002 are separated by 367 nucleotides
GFF1998 - Glucans biosynthesis protein D, at 231,803 to 233,431
GFF1998
GFF1999 - hypothetical protein, at 233,835 to 234,020
GFF1999
GFF2000 - hypothetical protein, at 234,198 to 234,920
GFF2000
GFF2001 - hypothetical protein, at 235,046 to 235,390
GFF2001
GFF2002 - hypothetical protein, at 235,758 to 236,396
GFF2002
Position (kb) 234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.242 kb on + strand, within GFF1998 at 233.251 kb on - strand, within GFF1998 at 233.251 kb on - strand, within GFF1998 at 233.385 kb on + strand at 233.385 kb on + strand at 233.385 kb on + strand at 233.385 kb on + strand at 233.386 kb on - strand at 233.431 kb on + strand at 233.431 kb on + strand at 233.432 kb on - strand at 233.432 kb on - strand at 233.432 kb on - strand at 233.432 kb on - strand at 233.432 kb on - strand at 233.435 kb on + strand at 233.435 kb on + strand at 233.435 kb on + strand at 233.435 kb on + strand at 233.435 kb on + strand at 233.435 kb on + strand at 233.436 kb on - strand at 233.436 kb on - strand at 233.436 kb on - strand at 233.436 kb on - strand at 233.475 kb on + strand at 233.476 kb on - strand at 233.527 kb on + strand at 233.527 kb on + strand at 233.527 kb on + strand at 233.528 kb on - strand at 233.528 kb on - strand at 233.528 kb on - strand at 233.528 kb on - strand at 233.529 kb on + strand at 233.529 kb on + strand at 233.530 kb on - strand at 233.530 kb on - strand at 233.530 kb on - strand at 233.530 kb on - strand at 233.549 kb on + strand at 233.549 kb on + strand at 233.621 kb on + strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.658 kb on - strand at 233.675 kb on - strand at 233.679 kb on - strand at 233.709 kb on - strand at 233.709 kb on - strand at 233.715 kb on + strand at 233.716 kb on - strand at 233.716 kb on - strand at 233.721 kb on - strand at 233.721 kb on - strand at 233.721 kb on - strand at 233.817 kb on + strand at 233.817 kb on + strand at 233.818 kb on - strand at 233.845 kb on + strand at 233.954 kb on - strand, within GFF1999 at 233.982 kb on + strand, within GFF1999 at 234.151 kb on + strand at 234.151 kb on + strand at 234.165 kb on + strand at 234.165 kb on + strand at 234.165 kb on + strand at 234.166 kb on - strand at 234.166 kb on - strand at 234.166 kb on - strand at 234.166 kb on - strand at 234.166 kb on - strand at 234.166 kb on - strand at 234.166 kb on - strand at 234.407 kb on + strand, within GFF2000 at 234.469 kb on + strand, within GFF2000 at 234.477 kb on + strand, within GFF2000 at 234.477 kb on + strand, within GFF2000 at 234.477 kb on + strand, within GFF2000 at 234.477 kb on + strand, within GFF2000 at 234.477 kb on + strand, within GFF2000 at 234.477 kb on + strand, within GFF2000 at 234.477 kb on + strand, within GFF2000 at 234.478 kb on - strand, within GFF2000 at 234.478 kb on - strand, within GFF2000 at 234.478 kb on - strand, within GFF2000 at 234.478 kb on - strand, within GFF2000 at 234.478 kb on - strand, within GFF2000 at 234.486 kb on + strand, within GFF2000 at 234.486 kb on + strand, within GFF2000 at 234.486 kb on + strand, within GFF2000 at 234.487 kb on - strand, within GFF2000 at 234.495 kb on + strand, within GFF2000 at 234.495 kb on + strand, within GFF2000 at 234.495 kb on + strand, within GFF2000 at 234.495 kb on + strand, within GFF2000 at 234.496 kb on - strand, within GFF2000 at 234.496 kb on - strand, within GFF2000 at 234.496 kb on - strand, within GFF2000 at 234.496 kb on - strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.783 kb on + strand, within GFF2000 at 234.784 kb on - strand, within GFF2000 at 234.784 kb on - strand, within GFF2000 at 234.784 kb on - strand, within GFF2000 at 234.784 kb on - strand, within GFF2000 at 234.784 kb on - strand, within GFF2000 at 234.821 kb on + strand, within GFF2000 at 234.821 kb on + strand, within GFF2000 at 234.834 kb on + strand, within GFF2000 at 234.834 kb on + strand, within GFF2000 at 234.835 kb on - strand, within GFF2000 at 234.835 kb on - strand, within GFF2000 at 234.924 kb on + strand at 235.013 kb on + strand at 235.044 kb on - strand at 235.144 kb on + strand, within GFF2001 at 235.169 kb on + strand, within GFF2001 at 235.358 kb on - strand at 235.457 kb on - strand at 235.529 kb on + strand at 235.632 kb on + strand at 235.659 kb on - strand at 235.684 kb on - strand at 235.700 kb on - strand at 235.700 kb on - strand at 235.726 kb on - strand at 235.726 kb on - strand at 235.726 kb on - strand at 235.726 kb on - strand at 235.726 kb on - strand at 235.726 kb on - strand at 235.726 kb on - strand at 235.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 233,242 + GFF1998 0.88 +0.4 233,251 - GFF1998 0.89 +1.2 233,251 - GFF1998 0.89 -0.5 233,385 + +1.8 233,385 + -0.3 233,385 + -0.2 233,385 + -2.5 233,386 - +1.3 233,431 + -0.3 233,431 + -1.0 233,432 - +0.3 233,432 - +0.0 233,432 - -0.0 233,432 - +0.4 233,432 - +0.1 233,435 + -1.5 233,435 + -0.1 233,435 + +0.1 233,435 + -0.6 233,435 + +0.2 233,435 + -1.7 233,436 - -0.1 233,436 - -0.3 233,436 - -0.1 233,436 - +0.5 233,475 + -1.6 233,476 - +0.5 233,527 + +0.5 233,527 + -0.9 233,527 + +0.2 233,528 - -1.1 233,528 - -1.0 233,528 - -0.9 233,528 - -0.6 233,529 + +0.4 233,529 + +0.7 233,530 - -0.4 233,530 - -0.8 233,530 - +1.0 233,530 - -0.1 233,549 + -0.0 233,549 + -0.0 233,621 + +0.5 233,658 - -0.3 233,658 - -0.1 233,658 - +0.4 233,658 - +0.0 233,658 - -0.0 233,658 - +0.0 233,658 - -1.7 233,658 - -0.8 233,658 - -0.8 233,675 - -0.7 233,679 - +0.1 233,709 - +0.1 233,709 - -0.3 233,715 + +0.3 233,716 - -0.4 233,716 - -1.6 233,721 - -2.0 233,721 - -0.1 233,721 - +1.3 233,817 + -0.6 233,817 + +0.6 233,818 - -0.0 233,845 + -1.4 233,954 - GFF1999 0.64 -1.1 233,982 + GFF1999 0.79 +1.2 234,151 + +0.7 234,151 + +0.4 234,165 + -0.1 234,165 + -0.6 234,165 + +0.5 234,166 - +0.4 234,166 - -1.7 234,166 - +0.1 234,166 - -0.7 234,166 - -0.0 234,166 - +0.7 234,166 - -0.0 234,407 + GFF2000 0.29 -1.7 234,469 + GFF2000 0.37 +0.7 234,477 + GFF2000 0.39 +0.1 234,477 + GFF2000 0.39 -2.0 234,477 + GFF2000 0.39 -0.6 234,477 + GFF2000 0.39 -0.2 234,477 + GFF2000 0.39 -0.5 234,477 + GFF2000 0.39 -0.3 234,477 + GFF2000 0.39 -0.2 234,478 - GFF2000 0.39 -0.9 234,478 - GFF2000 0.39 -0.3 234,478 - GFF2000 0.39 -0.9 234,478 - GFF2000 0.39 +2.0 234,478 - GFF2000 0.39 +0.7 234,486 + GFF2000 0.40 -0.1 234,486 + GFF2000 0.40 -0.9 234,486 + GFF2000 0.40 -0.1 234,487 - GFF2000 0.40 -0.9 234,495 + GFF2000 0.41 +0.0 234,495 + GFF2000 0.41 -0.4 234,495 + GFF2000 0.41 -1.0 234,495 + GFF2000 0.41 -2.3 234,496 - GFF2000 0.41 +1.0 234,496 - GFF2000 0.41 -0.6 234,496 - GFF2000 0.41 +0.0 234,496 - GFF2000 0.41 +1.5 234,783 + GFF2000 0.81 +1.0 234,783 + GFF2000 0.81 +0.1 234,783 + GFF2000 0.81 -0.9 234,783 + GFF2000 0.81 +0.4 234,783 + GFF2000 0.81 -0.1 234,783 + GFF2000 0.81 +0.4 234,783 + GFF2000 0.81 +0.1 234,783 + GFF2000 0.81 +0.1 234,783 + GFF2000 0.81 -0.7 234,783 + GFF2000 0.81 -0.2 234,783 + GFF2000 0.81 -0.1 234,783 + GFF2000 0.81 -1.6 234,784 - GFF2000 0.81 -1.0 234,784 - GFF2000 0.81 -1.2 234,784 - GFF2000 0.81 -0.3 234,784 - GFF2000 0.81 -0.2 234,784 - GFF2000 0.81 -1.9 234,821 + GFF2000 0.86 +0.8 234,821 + GFF2000 0.86 +0.6 234,834 + GFF2000 0.88 +0.3 234,834 + GFF2000 0.88 -0.6 234,835 - GFF2000 0.88 -1.9 234,835 - GFF2000 0.88 -0.1 234,924 + -0.3 235,013 + +0.0 235,044 - +0.3 235,144 + GFF2001 0.28 -1.2 235,169 + GFF2001 0.36 +0.5 235,358 - -1.1 235,457 - +0.7 235,529 + +0.3 235,632 + +0.1 235,659 - +1.2 235,684 - +1.2 235,700 - -0.6 235,700 - +0.4 235,726 - -0.6 235,726 - +0.3 235,726 - -0.5 235,726 - +0.8 235,726 - -0.4 235,726 - -0.2 235,726 - -0.5 235,727 + +0.4
Or see this region's nucleotide sequence