Strain Fitness in Pseudomonas sp. DMC3 around GFF1305

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1304 and GFF1305 are separated by 202 nucleotidesGFF1305 and GFF1306 are separated by 289 nucleotidesGFF1306 and GFF1307 are separated by 39 nucleotides GFF1304 - Transaldolase B, at 60,177 to 61,103 GFF1304 GFF1305 - hypothetical protein, at 61,306 to 62,262 GFF1305 GFF1306 - putative low molecular weight protein-tyrosine-phosphatase AmsI, at 62,552 to 62,992 GFF1306 GFF1307 - Tyrosine-protein kinase wzc, at 63,032 to 65,254 GFF1307 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 60.443 kb on + strand, within GFF1304at 60.444 kb on - strand, within GFF1304at 60.444 kb on - strand, within GFF1304at 60.475 kb on + strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.490 kb on + strand, within GFF1304at 60.490 kb on + strand, within GFF1304at 60.490 kb on + strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.499 kb on + strand, within GFF1304at 60.499 kb on + strand, within GFF1304at 60.499 kb on + strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.544 kb on + strand, within GFF1304at 60.544 kb on + strand, within GFF1304at 60.568 kb on + strand, within GFF1304at 60.568 kb on + strand, within GFF1304at 60.569 kb on - strand, within GFF1304at 60.569 kb on - strand, within GFF1304at 60.577 kb on + strand, within GFF1304at 60.577 kb on + strand, within GFF1304at 60.578 kb on - strand, within GFF1304at 60.578 kb on - strand, within GFF1304at 60.578 kb on - strand, within GFF1304at 60.581 kb on + strand, within GFF1304at 60.582 kb on - strand, within GFF1304at 60.769 kb on + strand, within GFF1304at 60.769 kb on + strand, within GFF1304at 60.770 kb on - strand, within GFF1304at 61.062 kb on + strandat 61.062 kb on + strandat 61.062 kb on + strandat 61.063 kb on - strandat 61.063 kb on - strandat 61.063 kb on - strandat 61.115 kb on - strandat 61.119 kb on + strandat 61.120 kb on - strandat 61.241 kb on + strandat 61.241 kb on + strandat 61.307 kb on + strandat 61.307 kb on + strandat 61.307 kb on + strandat 61.308 kb on - strandat 61.330 kb on + strandat 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.431 kb on + strand, within GFF1305at 61.431 kb on + strand, within GFF1305at 61.432 kb on - strand, within GFF1305at 61.432 kb on - strand, within GFF1305at 61.432 kb on - strand, within GFF1305at 61.470 kb on + strand, within GFF1305at 61.470 kb on + strand, within GFF1305at 61.471 kb on - strand, within GFF1305at 61.625 kb on + strand, within GFF1305at 61.625 kb on + strand, within GFF1305at 61.626 kb on - strand, within GFF1305at 61.666 kb on - strand, within GFF1305at 61.666 kb on - strand, within GFF1305at 61.821 kb on - strand, within GFF1305at 61.821 kb on - strand, within GFF1305at 61.911 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.037 kb on - strand, within GFF1305at 62.037 kb on - strand, within GFF1305at 62.241 kb on + strandat 62.290 kb on + strandat 62.291 kb on - strandat 62.297 kb on - strandat 62.297 kb on - strandat 62.297 kb on - strandat 62.337 kb on + strandat 62.442 kb on - strandat 62.455 kb on + strandat 62.535 kb on - strandat 62.587 kb on + strandat 62.587 kb on + strandat 62.587 kb on + strandat 62.588 kb on - strandat 62.588 kb on - strandat 62.589 kb on + strandat 62.589 kb on + strandat 62.589 kb on + strandat 62.589 kb on + strandat 62.590 kb on - strandat 62.590 kb on - strandat 62.648 kb on - strand, within GFF1306at 62.895 kb on + strand, within GFF1306at 63.012 kb on + strandat 63.031 kb on + strandat 63.032 kb on - strandat 63.040 kb on - strandat 63.079 kb on + strandat 63.079 kb on + strandat 63.079 kb on + strandat 63.194 kb on + strandat 63.195 kb on - strandat 63.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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60,443 + GFF1304 0.29 -1.2
60,444 - GFF1304 0.29 -0.8
60,444 - GFF1304 0.29 +0.6
60,475 + GFF1304 0.32 -0.9
60,476 - GFF1304 0.32 +0.4
60,476 - GFF1304 0.32 +0.1
60,476 - GFF1304 0.32 -0.8
60,476 - GFF1304 0.32 -1.4
60,490 + GFF1304 0.34 -0.8
60,490 + GFF1304 0.34 +0.6
60,490 + GFF1304 0.34 +1.2
60,491 - GFF1304 0.34 +1.0
60,491 - GFF1304 0.34 +0.0
60,491 - GFF1304 0.34 -0.3
60,491 - GFF1304 0.34 -1.4
60,491 - GFF1304 0.34 +0.9
60,491 - GFF1304 0.34 -0.6
60,491 - GFF1304 0.34 -0.1
60,494 - GFF1304 0.34 +0.9
60,494 - GFF1304 0.34 -0.5
60,494 - GFF1304 0.34 +0.1
60,494 - GFF1304 0.34 -0.7
60,494 - GFF1304 0.34 +0.4
60,494 - GFF1304 0.34 -0.2
60,494 - GFF1304 0.34 +1.0
60,494 - GFF1304 0.34 +0.6
60,494 - GFF1304 0.34 -1.4
60,494 - GFF1304 0.34 -0.7
60,499 + GFF1304 0.35 -0.3
60,499 + GFF1304 0.35 -0.8
60,499 + GFF1304 0.35 +1.0
60,500 - GFF1304 0.35 +1.4
60,500 - GFF1304 0.35 +0.4
60,500 - GFF1304 0.35 -0.3
60,500 - GFF1304 0.35 -0.1
60,500 - GFF1304 0.35 +1.0
60,544 + GFF1304 0.40 -1.5
60,544 + GFF1304 0.40 +0.0
60,568 + GFF1304 0.42 -1.2
60,568 + GFF1304 0.42 -0.3
60,569 - GFF1304 0.42 +1.0
60,569 - GFF1304 0.42 -0.4
60,577 + GFF1304 0.43 +0.0
60,577 + GFF1304 0.43 +0.7
60,578 - GFF1304 0.43 -0.6
60,578 - GFF1304 0.43 +0.2
60,578 - GFF1304 0.43 -1.1
60,581 + GFF1304 0.44 -0.4
60,582 - GFF1304 0.44 +0.4
60,769 + GFF1304 0.64 +0.0
60,769 + GFF1304 0.64 -0.6
60,770 - GFF1304 0.64 +0.6
61,062 + -1.0
61,062 + -1.4
61,062 + -0.7
61,063 - -0.4
61,063 - -0.2
61,063 - +0.0
61,115 - -0.6
61,119 + +0.9
61,120 - +0.6
61,241 + +0.2
61,241 + -1.0
61,307 + +0.5
61,307 + -0.3
61,307 + -0.2
61,308 - +0.5
61,330 + +0.5
61,427 + GFF1305 0.13 -1.3
61,427 + GFF1305 0.13 -1.6
61,427 + GFF1305 0.13 -0.7
61,427 + GFF1305 0.13 -0.1
61,427 + GFF1305 0.13 +0.3
61,427 + GFF1305 0.13 -0.2
61,427 + GFF1305 0.13 +0.5
61,427 + GFF1305 0.13 +0.8
61,427 + GFF1305 0.13 -0.5
61,427 + GFF1305 0.13 -0.3
61,427 + GFF1305 0.13 +1.6
61,428 - GFF1305 0.13 +0.0
61,428 - GFF1305 0.13 +0.2
61,428 - GFF1305 0.13 -0.8
61,428 - GFF1305 0.13 -0.2
61,428 - GFF1305 0.13 -0.7
61,428 - GFF1305 0.13 +0.0
61,428 - GFF1305 0.13 -0.2
61,428 - GFF1305 0.13 -0.2
61,428 - GFF1305 0.13 -1.0
61,428 - GFF1305 0.13 -1.1
61,431 + GFF1305 0.13 +0.0
61,431 + GFF1305 0.13 -0.6
61,432 - GFF1305 0.13 -0.7
61,432 - GFF1305 0.13 -1.2
61,432 - GFF1305 0.13 -1.2
61,470 + GFF1305 0.17 +0.3
61,470 + GFF1305 0.17 -1.3
61,471 - GFF1305 0.17 -0.3
61,625 + GFF1305 0.33 -0.4
61,625 + GFF1305 0.33 -0.6
61,626 - GFF1305 0.33 -0.5
61,666 - GFF1305 0.38 +0.4
61,666 - GFF1305 0.38 -0.1
61,821 - GFF1305 0.54 +0.4
61,821 - GFF1305 0.54 -0.9
61,911 + GFF1305 0.63 -0.5
62,036 + GFF1305 0.76 -0.8
62,036 + GFF1305 0.76 +0.3
62,036 + GFF1305 0.76 -0.1
62,036 + GFF1305 0.76 -0.6
62,036 + GFF1305 0.76 -0.6
62,037 - GFF1305 0.76 +0.2
62,037 - GFF1305 0.76 -0.7
62,241 + -0.2
62,290 + +0.2
62,291 - -0.8
62,297 - -0.3
62,297 - -0.5
62,297 - +0.2
62,337 + -0.1
62,442 - -0.5
62,455 + -0.0
62,535 - +0.6
62,587 + +0.1
62,587 + -0.8
62,587 + -0.3
62,588 - +0.4
62,588 - -1.0
62,589 + -0.2
62,589 + -0.5
62,589 + -0.3
62,589 + +0.0
62,590 - -0.1
62,590 - +0.3
62,648 - GFF1306 0.22 -1.4
62,895 + GFF1306 0.78 -0.4
63,012 + -2.3
63,031 + -0.1
63,032 - -0.1
63,040 - -1.2
63,079 + +0.0
63,079 + -0.6
63,079 + +0.0
63,194 + -0.9
63,195 - +0.2
63,195 - -1.4

Or see this region's nucleotide sequence