Strain Fitness in Pseudomonas sp. DMC3 around GFF1038

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1037 and GFF1038 are separated by 182 nucleotidesGFF1038 and GFF1039 are separated by 218 nucleotides GFF1037 - Aminopeptidase N, at 378,935 to 381,592 GFF1037 GFF1038 - Catalase-peroxidase, at 381,775 to 384,051 GFF1038 GFF1039 - Phosphoglycerol transferase I, at 384,270 to 386,480 GFF1039 Position (kb) 381 382 383 384 385Strain fitness (log2 ratio) -2 -1 0 1at 380.834 kb on + strand, within GFF1037at 380.834 kb on + strand, within GFF1037at 380.835 kb on - strand, within GFF1037at 380.943 kb on - strand, within GFF1037at 380.978 kb on + strand, within GFF1037at 380.979 kb on - strand, within GFF1037at 380.979 kb on - strand, within GFF1037at 381.563 kb on + strandat 381.563 kb on + strandat 381.563 kb on + strandat 381.563 kb on + strandat 381.564 kb on - strandat 381.776 kb on + strandat 381.776 kb on + strandat 381.777 kb on - strandat 381.781 kb on - strandat 381.781 kb on - strandat 381.869 kb on + strandat 381.869 kb on + strandat 381.869 kb on + strandat 382.106 kb on - strand, within GFF1038at 382.214 kb on + strand, within GFF1038at 382.214 kb on + strand, within GFF1038at 382.214 kb on + strand, within GFF1038at 382.214 kb on + strand, within GFF1038at 382.215 kb on - strand, within GFF1038at 382.215 kb on - strand, within GFF1038at 382.725 kb on - strand, within GFF1038at 382.764 kb on - strand, within GFF1038at 382.833 kb on - strand, within GFF1038at 382.833 kb on - strand, within GFF1038at 382.833 kb on - strand, within GFF1038at 383.009 kb on + strand, within GFF1038at 383.009 kb on + strand, within GFF1038at 383.010 kb on - strand, within GFF1038at 383.010 kb on - strand, within GFF1038at 383.263 kb on - strand, within GFF1038at 383.318 kb on + strand, within GFF1038at 383.508 kb on - strand, within GFF1038at 383.508 kb on - strand, within GFF1038at 383.508 kb on - strand, within GFF1038at 383.625 kb on + strand, within GFF1038at 383.626 kb on - strand, within GFF1038at 384.063 kb on + strandat 384.131 kb on + strandat 384.143 kb on + strandat 384.182 kb on - strandat 384.182 kb on - strandat 384.380 kb on - strandat 384.518 kb on + strand, within GFF1039at 384.519 kb on - strand, within GFF1039at 384.527 kb on + strand, within GFF1039at 384.530 kb on - strand, within GFF1039at 384.605 kb on - strand, within GFF1039at 384.605 kb on - strand, within GFF1039at 384.769 kb on + strand, within GFF1039at 384.769 kb on + strand, within GFF1039at 384.770 kb on - strand, within GFF1039at 384.770 kb on - strand, within GFF1039at 384.770 kb on - strand, within GFF1039at 384.781 kb on + strand, within GFF1039at 384.781 kb on + strand, within GFF1039at 384.781 kb on + strand, within GFF1039at 384.781 kb on + strand, within GFF1039at 384.782 kb on - strand, within GFF1039at 384.782 kb on - strand, within GFF1039at 384.782 kb on - strand, within GFF1039at 384.782 kb on - strand, within GFF1039at 384.817 kb on + strand, within GFF1039at 384.817 kb on + strand, within GFF1039at 384.976 kb on + strand, within GFF1039

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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380,834 + GFF1037 0.71 -0.2
380,834 + GFF1037 0.71 +0.2
380,835 - GFF1037 0.71 +0.0
380,943 - GFF1037 0.76 -0.9
380,978 + GFF1037 0.77 -0.3
380,979 - GFF1037 0.77 -0.1
380,979 - GFF1037 0.77 -0.9
381,563 + -0.0
381,563 + +0.2
381,563 + +0.3
381,563 + +0.3
381,564 - +0.2
381,776 + -0.6
381,776 + -0.7
381,777 - -0.3
381,781 - -0.5
381,781 - -1.5
381,869 + -0.0
381,869 + -0.0
381,869 + -0.6
382,106 - GFF1038 0.15 -0.1
382,214 + GFF1038 0.19 +0.6
382,214 + GFF1038 0.19 -0.1
382,214 + GFF1038 0.19 +0.3
382,214 + GFF1038 0.19 +0.1
382,215 - GFF1038 0.19 -0.3
382,215 - GFF1038 0.19 -0.9
382,725 - GFF1038 0.42 +0.2
382,764 - GFF1038 0.43 -0.8
382,833 - GFF1038 0.46 -0.9
382,833 - GFF1038 0.46 +0.7
382,833 - GFF1038 0.46 -1.0
383,009 + GFF1038 0.54 -0.7
383,009 + GFF1038 0.54 +0.7
383,010 - GFF1038 0.54 +0.6
383,010 - GFF1038 0.54 +0.5
383,263 - GFF1038 0.65 -0.4
383,318 + GFF1038 0.68 -0.5
383,508 - GFF1038 0.76 +0.0
383,508 - GFF1038 0.76 -1.9
383,508 - GFF1038 0.76 +1.0
383,625 + GFF1038 0.81 -0.8
383,626 - GFF1038 0.81 -0.5
384,063 + -0.9
384,131 + -0.8
384,143 + +0.2
384,182 - +0.1
384,182 - -1.1
384,380 - +0.1
384,518 + GFF1039 0.11 +0.5
384,519 - GFF1039 0.11 +0.6
384,527 + GFF1039 0.12 -0.8
384,530 - GFF1039 0.12 -0.5
384,605 - GFF1039 0.15 -0.3
384,605 - GFF1039 0.15 -0.7
384,769 + GFF1039 0.23 -0.3
384,769 + GFF1039 0.23 -0.2
384,770 - GFF1039 0.23 -1.4
384,770 - GFF1039 0.23 -0.2
384,770 - GFF1039 0.23 -1.1
384,781 + GFF1039 0.23 +0.8
384,781 + GFF1039 0.23 -0.6
384,781 + GFF1039 0.23 -0.9
384,781 + GFF1039 0.23 +0.2
384,782 - GFF1039 0.23 -0.3
384,782 - GFF1039 0.23 -0.5
384,782 - GFF1039 0.23 -0.1
384,782 - GFF1039 0.23 -1.5
384,817 + GFF1039 0.25 +0.2
384,817 + GFF1039 0.25 +0.0
384,976 + GFF1039 0.32 -1.0

Or see this region's nucleotide sequence