Experiment: T2 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00627 and OHPLBJKB_00628 are separated by 218 nucleotides OHPLBJKB_00628 and OHPLBJKB_00629 are separated by 41 nucleotides OHPLBJKB_00629 and OHPLBJKB_00630 are separated by 306 nucleotides
OHPLBJKB_00627: OHPLBJKB_00627 - HTH-type transcriptional regulator LacR, at 645,008 to 645,991
_00627
OHPLBJKB_00628: OHPLBJKB_00628 - tRNA-binding protein YgjH, at 646,210 to 646,542
_00628
OHPLBJKB_00629: OHPLBJKB_00629 - Putrescine aminotransferase, at 646,584 to 648,074
_00629
OHPLBJKB_00630: OHPLBJKB_00630 - Aerotaxis receptor, at 648,381 to 649,901
_00630
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -2
-1
0
1 at 645.635 kb on + strand, within OHPLBJKB_00627 at 645.636 kb on - strand, within OHPLBJKB_00627 at 645.655 kb on + strand, within OHPLBJKB_00627 at 645.681 kb on + strand, within OHPLBJKB_00627 at 645.747 kb on + strand, within OHPLBJKB_00627 at 645.747 kb on + strand, within OHPLBJKB_00627 at 645.747 kb on + strand, within OHPLBJKB_00627 at 645.747 kb on + strand, within OHPLBJKB_00627 at 645.748 kb on - strand, within OHPLBJKB_00627 at 645.748 kb on - strand, within OHPLBJKB_00627 at 645.748 kb on - strand, within OHPLBJKB_00627 at 645.786 kb on + strand, within OHPLBJKB_00627 at 645.786 kb on + strand, within OHPLBJKB_00627 at 645.786 kb on + strand, within OHPLBJKB_00627 at 645.786 kb on + strand, within OHPLBJKB_00627 at 645.786 kb on + strand, within OHPLBJKB_00627 at 645.787 kb on - strand, within OHPLBJKB_00627 at 645.787 kb on - strand, within OHPLBJKB_00627 at 645.799 kb on + strand, within OHPLBJKB_00627 at 645.800 kb on - strand, within OHPLBJKB_00627 at 645.800 kb on - strand, within OHPLBJKB_00627 at 645.828 kb on - strand, within OHPLBJKB_00627 at 645.852 kb on + strand, within OHPLBJKB_00627 at 645.926 kb on + strand at 645.926 kb on + strand at 645.926 kb on + strand at 645.927 kb on - strand at 645.927 kb on - strand at 645.980 kb on + strand at 645.980 kb on + strand at 645.981 kb on - strand at 645.981 kb on - strand at 646.032 kb on - strand at 646.032 kb on - strand at 646.032 kb on - strand at 646.044 kb on + strand at 646.045 kb on - strand at 646.070 kb on - strand at 646.070 kb on - strand at 646.225 kb on + strand at 646.226 kb on - strand at 646.303 kb on + strand, within OHPLBJKB_00628 at 646.304 kb on - strand, within OHPLBJKB_00628 at 646.310 kb on + strand, within OHPLBJKB_00628 at 646.310 kb on + strand, within OHPLBJKB_00628 at 646.363 kb on + strand, within OHPLBJKB_00628 at 646.364 kb on - strand, within OHPLBJKB_00628 at 646.364 kb on - strand, within OHPLBJKB_00628 at 646.366 kb on + strand, within OHPLBJKB_00628 at 646.367 kb on - strand, within OHPLBJKB_00628 at 646.406 kb on + strand, within OHPLBJKB_00628 at 646.406 kb on + strand, within OHPLBJKB_00628 at 646.529 kb on + strand at 646.585 kb on + strand at 646.585 kb on + strand at 646.585 kb on + strand at 646.585 kb on + strand at 646.602 kb on + strand at 646.603 kb on - strand at 646.757 kb on + strand, within OHPLBJKB_00629 at 646.871 kb on + strand, within OHPLBJKB_00629 at 646.871 kb on + strand, within OHPLBJKB_00629 at 646.872 kb on - strand, within OHPLBJKB_00629 at 646.872 kb on - strand, within OHPLBJKB_00629 at 646.899 kb on + strand, within OHPLBJKB_00629 at 647.091 kb on + strand, within OHPLBJKB_00629 at 647.091 kb on + strand, within OHPLBJKB_00629 at 647.092 kb on - strand, within OHPLBJKB_00629 at 647.184 kb on + strand, within OHPLBJKB_00629 at 647.184 kb on + strand, within OHPLBJKB_00629 at 647.189 kb on + strand, within OHPLBJKB_00629 at 647.189 kb on + strand, within OHPLBJKB_00629 at 647.189 kb on + strand, within OHPLBJKB_00629 at 647.189 kb on + strand, within OHPLBJKB_00629 at 647.189 kb on + strand, within OHPLBJKB_00629 at 647.189 kb on + strand, within OHPLBJKB_00629 at 647.189 kb on + strand, within OHPLBJKB_00629 at 647.190 kb on - strand, within OHPLBJKB_00629 at 647.190 kb on - strand, within OHPLBJKB_00629 at 647.190 kb on - strand, within OHPLBJKB_00629 at 647.190 kb on - strand, within OHPLBJKB_00629 at 647.190 kb on - strand, within OHPLBJKB_00629 at 647.194 kb on - strand, within OHPLBJKB_00629 at 647.194 kb on - strand, within OHPLBJKB_00629 at 647.226 kb on + strand, within OHPLBJKB_00629 at 647.226 kb on + strand, within OHPLBJKB_00629 at 647.227 kb on - strand, within OHPLBJKB_00629 at 647.417 kb on + strand, within OHPLBJKB_00629 at 647.418 kb on - strand, within OHPLBJKB_00629 at 647.520 kb on - strand, within OHPLBJKB_00629 at 647.523 kb on - strand, within OHPLBJKB_00629 at 647.644 kb on - strand, within OHPLBJKB_00629 at 647.666 kb on + strand, within OHPLBJKB_00629 at 647.745 kb on + strand, within OHPLBJKB_00629 at 647.745 kb on + strand, within OHPLBJKB_00629 at 647.746 kb on - strand, within OHPLBJKB_00629 at 647.766 kb on + strand, within OHPLBJKB_00629 at 647.767 kb on - strand, within OHPLBJKB_00629 at 647.807 kb on - strand, within OHPLBJKB_00629 at 647.843 kb on - strand, within OHPLBJKB_00629 at 647.846 kb on + strand, within OHPLBJKB_00629 at 647.846 kb on + strand, within OHPLBJKB_00629 at 647.847 kb on - strand, within OHPLBJKB_00629 at 647.847 kb on - strand, within OHPLBJKB_00629 at 647.847 kb on - strand, within OHPLBJKB_00629 at 647.847 kb on - strand, within OHPLBJKB_00629 at 647.861 kb on + strand, within OHPLBJKB_00629 at 647.967 kb on - strand at 647.967 kb on - strand at 648.003 kb on + strand at 648.003 kb on + strand at 648.004 kb on - strand at 648.007 kb on + strand at 648.007 kb on + strand at 648.007 kb on + strand at 648.007 kb on + strand at 648.008 kb on - strand at 648.008 kb on - strand at 648.181 kb on - strand at 648.305 kb on + strand at 648.331 kb on + strand at 648.396 kb on + strand at 648.397 kb on - strand at 648.432 kb on - strand at 648.465 kb on + strand at 648.465 kb on + strand at 648.465 kb on + strand at 648.465 kb on + strand at 648.465 kb on + strand at 648.465 kb on + strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.466 kb on - strand at 648.467 kb on + strand at 648.507 kb on + strand at 648.508 kb on - strand at 648.509 kb on + strand at 648.509 kb on + strand at 648.509 kb on + strand at 648.509 kb on + strand at 648.509 kb on + strand at 648.509 kb on + strand at 648.510 kb on - strand at 648.510 kb on - strand at 648.523 kb on + strand at 648.524 kb on - strand at 648.711 kb on + strand, within OHPLBJKB_00630 at 648.711 kb on + strand, within OHPLBJKB_00630 at 648.711 kb on + strand, within OHPLBJKB_00630 at 648.712 kb on + strand, within OHPLBJKB_00630 at 648.712 kb on - strand, within OHPLBJKB_00630 at 648.712 kb on - strand, within OHPLBJKB_00630 at 648.712 kb on - strand, within OHPLBJKB_00630 at 648.713 kb on + strand, within OHPLBJKB_00630 at 648.713 kb on + strand, within OHPLBJKB_00630 at 648.713 kb on + strand, within OHPLBJKB_00630 at 648.713 kb on + strand, within OHPLBJKB_00630 at 648.713 kb on + strand, within OHPLBJKB_00630 at 648.713 kb on + strand, within OHPLBJKB_00630 at 648.713 kb on + strand, within OHPLBJKB_00630 at 648.714 kb on - strand, within OHPLBJKB_00630 at 648.714 kb on - strand, within OHPLBJKB_00630 at 648.714 kb on - strand, within OHPLBJKB_00630 at 648.714 kb on - strand, within OHPLBJKB_00630 at 648.714 kb on - strand, within OHPLBJKB_00630 at 648.791 kb on + strand, within OHPLBJKB_00630 at 648.792 kb on - strand, within OHPLBJKB_00630 at 648.899 kb on + strand, within OHPLBJKB_00630 at 648.900 kb on - strand, within OHPLBJKB_00630 at 648.900 kb on - strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.948 kb on + strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.949 kb on - strand, within OHPLBJKB_00630 at 648.971 kb on - strand, within OHPLBJKB_00630 at 649.015 kb on + strand, within OHPLBJKB_00630 at 649.061 kb on + strand, within OHPLBJKB_00630 at 649.061 kb on + strand, within OHPLBJKB_00630 at 649.061 kb on + strand, within OHPLBJKB_00630 at 649.061 kb on + strand, within OHPLBJKB_00630 at 649.061 kb on + strand, within OHPLBJKB_00630 at 649.061 kb on + strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.062 kb on - strand, within OHPLBJKB_00630 at 649.064 kb on + strand, within OHPLBJKB_00630 at 649.065 kb on - strand, within OHPLBJKB_00630
Per-strain Table
Position Strand Gene LocusTag Fraction T2 MOI1 remove 645,635 + OHPLBJKB_00627 0.64 +0.3 645,636 - OHPLBJKB_00627 0.64 +0.4 645,655 + OHPLBJKB_00627 0.66 +0.6 645,681 + OHPLBJKB_00627 0.68 +1.3 645,747 + OHPLBJKB_00627 0.75 +0.0 645,747 + OHPLBJKB_00627 0.75 +0.2 645,747 + OHPLBJKB_00627 0.75 +0.5 645,747 + OHPLBJKB_00627 0.75 +0.1 645,748 - OHPLBJKB_00627 0.75 +0.4 645,748 - OHPLBJKB_00627 0.75 -1.6 645,748 - OHPLBJKB_00627 0.75 -0.4 645,786 + OHPLBJKB_00627 0.79 -0.6 645,786 + OHPLBJKB_00627 0.79 +0.3 645,786 + OHPLBJKB_00627 0.79 -0.1 645,786 + OHPLBJKB_00627 0.79 -0.1 645,786 + OHPLBJKB_00627 0.79 -1.5 645,787 - OHPLBJKB_00627 0.79 +0.5 645,787 - OHPLBJKB_00627 0.79 +1.2 645,799 + OHPLBJKB_00627 0.80 -1.5 645,800 - OHPLBJKB_00627 0.80 +0.3 645,800 - OHPLBJKB_00627 0.80 -0.5 645,828 - OHPLBJKB_00627 0.83 -0.9 645,852 + OHPLBJKB_00627 0.86 -1.5 645,926 + -0.1 645,926 + -1.8 645,926 + +0.1 645,927 - -1.1 645,927 - +0.4 645,980 + +0.4 645,980 + +0.4 645,981 - +0.9 645,981 - -0.5 646,032 - +0.0 646,032 - -0.7 646,032 - -0.7 646,044 + -0.1 646,045 - -0.2 646,070 - +0.3 646,070 - +0.2 646,225 + -0.1 646,226 - +0.4 646,303 + OHPLBJKB_00628 0.28 +0.1 646,304 - OHPLBJKB_00628 0.28 +0.3 646,310 + OHPLBJKB_00628 0.30 +0.1 646,310 + OHPLBJKB_00628 0.30 -0.8 646,363 + OHPLBJKB_00628 0.46 +0.2 646,364 - OHPLBJKB_00628 0.46 -1.1 646,364 - OHPLBJKB_00628 0.46 +1.0 646,366 + OHPLBJKB_00628 0.47 +0.1 646,367 - OHPLBJKB_00628 0.47 +0.0 646,406 + OHPLBJKB_00628 0.59 -0.3 646,406 + OHPLBJKB_00628 0.59 +0.3 646,529 + -1.5 646,585 + -0.5 646,585 + +0.3 646,585 + +0.8 646,585 + -1.0 646,602 + +0.1 646,603 - +0.4 646,757 + OHPLBJKB_00629 0.12 +0.1 646,871 + OHPLBJKB_00629 0.19 -0.2 646,871 + OHPLBJKB_00629 0.19 -1.0 646,872 - OHPLBJKB_00629 0.19 -0.1 646,872 - OHPLBJKB_00629 0.19 -0.8 646,899 + OHPLBJKB_00629 0.21 -1.4 647,091 + OHPLBJKB_00629 0.34 -1.3 647,091 + OHPLBJKB_00629 0.34 -1.2 647,092 - OHPLBJKB_00629 0.34 +1.2 647,184 + OHPLBJKB_00629 0.40 +0.7 647,184 + OHPLBJKB_00629 0.40 -1.1 647,189 + OHPLBJKB_00629 0.41 -1.0 647,189 + OHPLBJKB_00629 0.41 +1.2 647,189 + OHPLBJKB_00629 0.41 -0.2 647,189 + OHPLBJKB_00629 0.41 -0.1 647,189 + OHPLBJKB_00629 0.41 -1.2 647,189 + OHPLBJKB_00629 0.41 +0.1 647,189 + OHPLBJKB_00629 0.41 +0.4 647,190 - OHPLBJKB_00629 0.41 +0.7 647,190 - OHPLBJKB_00629 0.41 -2.0 647,190 - OHPLBJKB_00629 0.41 +1.0 647,190 - OHPLBJKB_00629 0.41 -0.6 647,190 - OHPLBJKB_00629 0.41 -0.3 647,194 - OHPLBJKB_00629 0.41 -0.2 647,194 - OHPLBJKB_00629 0.41 -0.1 647,226 + OHPLBJKB_00629 0.43 -1.3 647,226 + OHPLBJKB_00629 0.43 -0.3 647,227 - OHPLBJKB_00629 0.43 -0.5 647,417 + OHPLBJKB_00629 0.56 -0.3 647,418 - OHPLBJKB_00629 0.56 -0.0 647,520 - OHPLBJKB_00629 0.63 -0.4 647,523 - OHPLBJKB_00629 0.63 -0.1 647,644 - OHPLBJKB_00629 0.71 -0.4 647,666 + OHPLBJKB_00629 0.73 -1.0 647,745 + OHPLBJKB_00629 0.78 -0.5 647,745 + OHPLBJKB_00629 0.78 +1.2 647,746 - OHPLBJKB_00629 0.78 -0.1 647,766 + OHPLBJKB_00629 0.79 -1.0 647,767 - OHPLBJKB_00629 0.79 -0.5 647,807 - OHPLBJKB_00629 0.82 +0.5 647,843 - OHPLBJKB_00629 0.84 +0.4 647,846 + OHPLBJKB_00629 0.85 -0.3 647,846 + OHPLBJKB_00629 0.85 -0.1 647,847 - OHPLBJKB_00629 0.85 +0.2 647,847 - OHPLBJKB_00629 0.85 -0.9 647,847 - OHPLBJKB_00629 0.85 -1.0 647,847 - OHPLBJKB_00629 0.85 -1.1 647,861 + OHPLBJKB_00629 0.86 +1.0 647,967 - +0.3 647,967 - +0.6 648,003 + +0.9 648,003 + -0.3 648,004 - +0.9 648,007 + +0.5 648,007 + +0.8 648,007 + -0.4 648,007 + +0.9 648,008 - -0.8 648,008 - +0.6 648,181 - +0.8 648,305 + -0.6 648,331 + -0.5 648,396 + -0.6 648,397 - +0.6 648,432 - -1.2 648,465 + -0.1 648,465 + -0.5 648,465 + +0.2 648,465 + +0.0 648,465 + -0.1 648,465 + -0.7 648,466 - -1.3 648,466 - -0.1 648,466 - +0.4 648,466 - -0.9 648,466 - -1.8 648,466 - +0.0 648,466 - -0.0 648,466 - -0.3 648,466 - -0.3 648,467 + +0.5 648,507 + -0.5 648,508 - +0.6 648,509 + +0.5 648,509 + -1.2 648,509 + -0.3 648,509 + -1.3 648,509 + -0.7 648,509 + -0.1 648,510 - +1.3 648,510 - -0.5 648,523 + -0.1 648,524 - +0.5 648,711 + OHPLBJKB_00630 0.22 -0.4 648,711 + OHPLBJKB_00630 0.22 -1.3 648,711 + OHPLBJKB_00630 0.22 -0.3 648,712 + OHPLBJKB_00630 0.22 -0.3 648,712 - OHPLBJKB_00630 0.22 +0.0 648,712 - OHPLBJKB_00630 0.22 -0.6 648,712 - OHPLBJKB_00630 0.22 -0.2 648,713 + OHPLBJKB_00630 0.22 +0.5 648,713 + OHPLBJKB_00630 0.22 -1.4 648,713 + OHPLBJKB_00630 0.22 +0.6 648,713 + OHPLBJKB_00630 0.22 -1.6 648,713 + OHPLBJKB_00630 0.22 +0.5 648,713 + OHPLBJKB_00630 0.22 -1.0 648,713 + OHPLBJKB_00630 0.22 -0.6 648,714 - OHPLBJKB_00630 0.22 -1.0 648,714 - OHPLBJKB_00630 0.22 -0.3 648,714 - OHPLBJKB_00630 0.22 -0.9 648,714 - OHPLBJKB_00630 0.22 +1.4 648,714 - OHPLBJKB_00630 0.22 -0.0 648,791 + OHPLBJKB_00630 0.27 +0.7 648,792 - OHPLBJKB_00630 0.27 +0.6 648,899 + OHPLBJKB_00630 0.34 +0.6 648,900 - OHPLBJKB_00630 0.34 +0.4 648,900 - OHPLBJKB_00630 0.34 +0.0 648,948 + OHPLBJKB_00630 0.37 +1.4 648,948 + OHPLBJKB_00630 0.37 +0.9 648,948 + OHPLBJKB_00630 0.37 +0.5 648,948 + OHPLBJKB_00630 0.37 +1.1 648,948 + OHPLBJKB_00630 0.37 -1.3 648,948 + OHPLBJKB_00630 0.37 +0.5 648,948 + OHPLBJKB_00630 0.37 -0.9 648,948 + OHPLBJKB_00630 0.37 +0.3 648,948 + OHPLBJKB_00630 0.37 -0.0 648,948 + OHPLBJKB_00630 0.37 -0.8 648,948 + OHPLBJKB_00630 0.37 +0.5 648,948 + OHPLBJKB_00630 0.37 -0.1 648,949 - OHPLBJKB_00630 0.37 +0.1 648,949 - OHPLBJKB_00630 0.37 -0.4 648,949 - OHPLBJKB_00630 0.37 +1.4 648,949 - OHPLBJKB_00630 0.37 -0.1 648,949 - OHPLBJKB_00630 0.37 -0.7 648,949 - OHPLBJKB_00630 0.37 -0.2 648,949 - OHPLBJKB_00630 0.37 -0.2 648,949 - OHPLBJKB_00630 0.37 -0.9 648,949 - OHPLBJKB_00630 0.37 -0.1 648,949 - OHPLBJKB_00630 0.37 -0.3 648,949 - OHPLBJKB_00630 0.37 +0.4 648,949 - OHPLBJKB_00630 0.37 -0.3 648,949 - OHPLBJKB_00630 0.37 -0.1 648,949 - OHPLBJKB_00630 0.37 +0.4 648,949 - OHPLBJKB_00630 0.37 -1.0 648,971 - OHPLBJKB_00630 0.39 +0.5 649,015 + OHPLBJKB_00630 0.42 -0.1 649,061 + OHPLBJKB_00630 0.45 -0.2 649,061 + OHPLBJKB_00630 0.45 +0.8 649,061 + OHPLBJKB_00630 0.45 +0.3 649,061 + OHPLBJKB_00630 0.45 -1.0 649,061 + OHPLBJKB_00630 0.45 -1.1 649,061 + OHPLBJKB_00630 0.45 +0.3 649,062 - OHPLBJKB_00630 0.45 -0.9 649,062 - OHPLBJKB_00630 0.45 -1.3 649,062 - OHPLBJKB_00630 0.45 +0.2 649,062 - OHPLBJKB_00630 0.45 -0.7 649,062 - OHPLBJKB_00630 0.45 -1.5 649,062 - OHPLBJKB_00630 0.45 -0.2 649,062 - OHPLBJKB_00630 0.45 +0.7 649,062 - OHPLBJKB_00630 0.45 -1.1 649,062 - OHPLBJKB_00630 0.45 +0.0 649,064 + OHPLBJKB_00630 0.45 -1.2 649,065 - OHPLBJKB_00630 0.45 +0.4
Or see this region's nucleotide sequence