Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00381

Experiment: T2 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00380 and OHPLBJKB_00381 are separated by 1 nucleotidesOHPLBJKB_00381 and OHPLBJKB_00382 are separated by 237 nucleotidesOHPLBJKB_00382 and OHPLBJKB_00383 are separated by 32 nucleotides OHPLBJKB_00380: OHPLBJKB_00380 - Putative general secretion pathway protein A, at 411,160 to 412,629 _00380 OHPLBJKB_00381: OHPLBJKB_00381 - Putative general secretion pathway protein B, at 412,631 to 413,050 _00381 OHPLBJKB_00382: OHPLBJKB_00382 - 30S ribosomal protein S10, at 413,288 to 413,599 _00382 OHPLBJKB_00383: OHPLBJKB_00383 - 50S ribosomal protein L3, at 413,632 to 414,261 _00383 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2at 411.673 kb on - strand, within OHPLBJKB_00380at 411.719 kb on + strand, within OHPLBJKB_00380at 411.725 kb on + strand, within OHPLBJKB_00380at 411.725 kb on + strand, within OHPLBJKB_00380at 411.726 kb on - strand, within OHPLBJKB_00380at 411.726 kb on - strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.780 kb on - strand, within OHPLBJKB_00380at 411.782 kb on + strand, within OHPLBJKB_00380at 411.836 kb on - strand, within OHPLBJKB_00380at 411.909 kb on + strand, within OHPLBJKB_00380at 411.909 kb on + strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.939 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.986 kb on + strand, within OHPLBJKB_00380at 411.987 kb on - strand, within OHPLBJKB_00380at 411.991 kb on - strand, within OHPLBJKB_00380at 411.999 kb on + strand, within OHPLBJKB_00380at 411.999 kb on + strand, within OHPLBJKB_00380at 411.999 kb on + strand, within OHPLBJKB_00380at 412.000 kb on - strand, within OHPLBJKB_00380at 412.000 kb on - strand, within OHPLBJKB_00380at 412.000 kb on - strand, within OHPLBJKB_00380at 412.000 kb on - strand, within OHPLBJKB_00380at 412.000 kb on - strand, within OHPLBJKB_00380at 412.000 kb on - strand, within OHPLBJKB_00380at 412.058 kb on - strand, within OHPLBJKB_00380at 412.058 kb on - strand, within OHPLBJKB_00380at 412.064 kb on + strand, within OHPLBJKB_00380at 412.112 kb on + strand, within OHPLBJKB_00380at 412.113 kb on - strand, within OHPLBJKB_00380at 412.131 kb on + strand, within OHPLBJKB_00380at 412.132 kb on - strand, within OHPLBJKB_00380at 412.163 kb on + strand, within OHPLBJKB_00380at 412.163 kb on + strand, within OHPLBJKB_00380at 412.164 kb on - strand, within OHPLBJKB_00380at 412.195 kb on - strand, within OHPLBJKB_00380at 412.262 kb on + strand, within OHPLBJKB_00380at 412.262 kb on + strand, within OHPLBJKB_00380at 412.263 kb on - strand, within OHPLBJKB_00380at 412.290 kb on + strand, within OHPLBJKB_00380at 412.290 kb on + strand, within OHPLBJKB_00380at 412.291 kb on - strand, within OHPLBJKB_00380at 412.291 kb on - strand, within OHPLBJKB_00380at 412.291 kb on - strand, within OHPLBJKB_00380at 412.291 kb on - strand, within OHPLBJKB_00380at 412.307 kb on + strand, within OHPLBJKB_00380at 412.321 kb on + strand, within OHPLBJKB_00380at 412.321 kb on + strand, within OHPLBJKB_00380at 412.322 kb on - strand, within OHPLBJKB_00380at 412.322 kb on - strand, within OHPLBJKB_00380at 412.359 kb on + strand, within OHPLBJKB_00380at 412.360 kb on - strand, within OHPLBJKB_00380at 412.360 kb on - strand, within OHPLBJKB_00380at 412.374 kb on + strand, within OHPLBJKB_00380at 412.413 kb on - strand, within OHPLBJKB_00380at 412.429 kb on - strand, within OHPLBJKB_00380at 412.429 kb on - strand, within OHPLBJKB_00380at 412.429 kb on - strand, within OHPLBJKB_00380at 412.538 kb on + strandat 412.539 kb on - strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.541 kb on + strandat 412.542 kb on - strandat 412.542 kb on - strandat 412.542 kb on - strandat 412.542 kb on - strandat 412.573 kb on + strandat 412.573 kb on + strandat 412.573 kb on + strandat 412.573 kb on + strandat 412.573 kb on + strandat 412.574 kb on - strandat 412.577 kb on + strandat 412.577 kb on + strandat 412.577 kb on + strandat 412.577 kb on + strandat 412.577 kb on + strandat 412.577 kb on + strandat 412.578 kb on - strandat 412.578 kb on - strandat 412.578 kb on - strandat 412.578 kb on - strandat 412.578 kb on - strandat 412.578 kb on - strandat 412.580 kb on - strandat 412.596 kb on + strandat 412.643 kb on + strandat 412.643 kb on + strandat 412.643 kb on + strandat 412.643 kb on + strandat 412.644 kb on - strandat 412.644 kb on - strandat 412.644 kb on - strandat 412.713 kb on + strand, within OHPLBJKB_00381at 412.713 kb on + strand, within OHPLBJKB_00381at 412.714 kb on - strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.716 kb on + strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.717 kb on - strand, within OHPLBJKB_00381at 412.718 kb on + strand, within OHPLBJKB_00381at 412.718 kb on + strand, within OHPLBJKB_00381at 412.718 kb on + strand, within OHPLBJKB_00381at 412.718 kb on + strand, within OHPLBJKB_00381at 412.718 kb on + strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.719 kb on - strand, within OHPLBJKB_00381at 412.722 kb on + strand, within OHPLBJKB_00381at 412.722 kb on + strand, within OHPLBJKB_00381at 412.723 kb on - strand, within OHPLBJKB_00381at 412.723 kb on - strand, within OHPLBJKB_00381at 412.723 kb on - strand, within OHPLBJKB_00381at 412.723 kb on - strand, within OHPLBJKB_00381at 412.735 kb on - strand, within OHPLBJKB_00381at 412.827 kb on + strand, within OHPLBJKB_00381at 412.827 kb on + strand, within OHPLBJKB_00381at 412.868 kb on + strand, within OHPLBJKB_00381at 412.868 kb on + strand, within OHPLBJKB_00381at 412.869 kb on - strand, within OHPLBJKB_00381at 413.008 kb on - strand, within OHPLBJKB_00381at 413.008 kb on - strand, within OHPLBJKB_00381at 413.125 kb on + strandat 413.175 kb on + strandat 413.175 kb on + strandat 413.175 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T2 MOI1
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411,673 - OHPLBJKB_00380 0.35 +0.5
411,719 + OHPLBJKB_00380 0.38 -1.1
411,725 + OHPLBJKB_00380 0.38 +0.2
411,725 + OHPLBJKB_00380 0.38 +1.7
411,726 - OHPLBJKB_00380 0.39 +1.4
411,726 - OHPLBJKB_00380 0.39 +0.6
411,728 + OHPLBJKB_00380 0.39 +1.1
411,728 + OHPLBJKB_00380 0.39 -0.1
411,728 + OHPLBJKB_00380 0.39 +0.4
411,728 + OHPLBJKB_00380 0.39 -0.5
411,729 - OHPLBJKB_00380 0.39 +0.1
411,729 - OHPLBJKB_00380 0.39 +2.2
411,729 - OHPLBJKB_00380 0.39 +0.7
411,729 - OHPLBJKB_00380 0.39 +0.6
411,780 - OHPLBJKB_00380 0.42 +0.2
411,782 + OHPLBJKB_00380 0.42 -1.1
411,836 - OHPLBJKB_00380 0.46 -1.7
411,909 + OHPLBJKB_00380 0.51 -0.2
411,909 + OHPLBJKB_00380 0.51 -0.2
411,910 - OHPLBJKB_00380 0.51 +0.4
411,910 - OHPLBJKB_00380 0.51 -0.0
411,910 - OHPLBJKB_00380 0.51 -0.1
411,910 - OHPLBJKB_00380 0.51 +0.8
411,939 + OHPLBJKB_00380 0.53 -0.1
411,945 + OHPLBJKB_00380 0.53 -0.2
411,945 + OHPLBJKB_00380 0.53 +0.1
411,945 + OHPLBJKB_00380 0.53 +0.0
411,945 + OHPLBJKB_00380 0.53 +1.1
411,945 + OHPLBJKB_00380 0.53 -0.3
411,945 + OHPLBJKB_00380 0.53 -0.4
411,946 - OHPLBJKB_00380 0.53 +0.4
411,946 - OHPLBJKB_00380 0.53 -0.4
411,946 - OHPLBJKB_00380 0.53 +0.4
411,946 - OHPLBJKB_00380 0.53 +0.3
411,946 - OHPLBJKB_00380 0.53 +2.5
411,946 - OHPLBJKB_00380 0.53 -0.4
411,946 - OHPLBJKB_00380 0.53 -0.2
411,946 - OHPLBJKB_00380 0.53 -0.6
411,986 + OHPLBJKB_00380 0.56 -0.9
411,987 - OHPLBJKB_00380 0.56 +0.7
411,991 - OHPLBJKB_00380 0.57 +0.4
411,999 + OHPLBJKB_00380 0.57 -0.1
411,999 + OHPLBJKB_00380 0.57 +0.3
411,999 + OHPLBJKB_00380 0.57 +0.5
412,000 - OHPLBJKB_00380 0.57 +0.5
412,000 - OHPLBJKB_00380 0.57 -1.0
412,000 - OHPLBJKB_00380 0.57 -0.3
412,000 - OHPLBJKB_00380 0.57 -1.3
412,000 - OHPLBJKB_00380 0.57 -0.4
412,000 - OHPLBJKB_00380 0.57 +0.2
412,058 - OHPLBJKB_00380 0.61 -0.9
412,058 - OHPLBJKB_00380 0.61 +0.3
412,064 + OHPLBJKB_00380 0.61 +0.3
412,112 + OHPLBJKB_00380 0.65 +0.7
412,113 - OHPLBJKB_00380 0.65 -1.1
412,131 + OHPLBJKB_00380 0.66 +0.6
412,132 - OHPLBJKB_00380 0.66 +0.4
412,163 + OHPLBJKB_00380 0.68 +0.8
412,163 + OHPLBJKB_00380 0.68 -0.0
412,164 - OHPLBJKB_00380 0.68 +0.5
412,195 - OHPLBJKB_00380 0.70 +1.0
412,262 + OHPLBJKB_00380 0.75 +0.2
412,262 + OHPLBJKB_00380 0.75 +0.6
412,263 - OHPLBJKB_00380 0.75 +0.5
412,290 + OHPLBJKB_00380 0.77 +0.2
412,290 + OHPLBJKB_00380 0.77 -0.2
412,291 - OHPLBJKB_00380 0.77 -0.4
412,291 - OHPLBJKB_00380 0.77 -0.4
412,291 - OHPLBJKB_00380 0.77 +1.0
412,291 - OHPLBJKB_00380 0.77 +2.4
412,307 + OHPLBJKB_00380 0.78 -0.1
412,321 + OHPLBJKB_00380 0.79 +0.5
412,321 + OHPLBJKB_00380 0.79 -0.7
412,322 - OHPLBJKB_00380 0.79 -0.1
412,322 - OHPLBJKB_00380 0.79 -0.2
412,359 + OHPLBJKB_00380 0.82 +0.4
412,360 - OHPLBJKB_00380 0.82 -0.5
412,360 - OHPLBJKB_00380 0.82 -2.4
412,374 + OHPLBJKB_00380 0.83 +0.2
412,413 - OHPLBJKB_00380 0.85 +0.5
412,429 - OHPLBJKB_00380 0.86 -0.2
412,429 - OHPLBJKB_00380 0.86 -0.0
412,429 - OHPLBJKB_00380 0.86 +0.2
412,538 + -0.4
412,539 - -0.1
412,541 + +0.2
412,541 + -0.5
412,541 + -0.1
412,541 + -0.2
412,541 + -0.7
412,541 + -0.5
412,541 + -1.6
412,541 + +0.2
412,541 + +0.1
412,541 + -0.6
412,542 - +0.1
412,542 - +0.3
412,542 - -0.2
412,542 - -0.8
412,573 + -0.7
412,573 + -0.4
412,573 + +0.1
412,573 + -0.7
412,573 + +0.5
412,574 - -0.0
412,577 + +0.0
412,577 + +0.6
412,577 + +0.1
412,577 + +0.2
412,577 + -1.2
412,577 + +0.1
412,578 - +0.1
412,578 - -2.3
412,578 - -0.6
412,578 - -1.3
412,578 - +0.7
412,578 - +0.9
412,580 - +0.2
412,596 + +1.1
412,643 + -0.3
412,643 + -0.9
412,643 + -0.4
412,643 + -0.4
412,644 - -0.4
412,644 - +0.8
412,644 - +0.0
412,713 + OHPLBJKB_00381 0.20 -0.3
412,713 + OHPLBJKB_00381 0.20 -1.6
412,714 - OHPLBJKB_00381 0.20 +0.5
412,716 + OHPLBJKB_00381 0.20 -0.0
412,716 + OHPLBJKB_00381 0.20 -0.1
412,716 + OHPLBJKB_00381 0.20 -0.7
412,716 + OHPLBJKB_00381 0.20 -0.3
412,716 + OHPLBJKB_00381 0.20 -1.9
412,716 + OHPLBJKB_00381 0.20 +0.7
412,716 + OHPLBJKB_00381 0.20 -0.3
412,716 + OHPLBJKB_00381 0.20 -0.7
412,717 - OHPLBJKB_00381 0.20 +0.2
412,717 - OHPLBJKB_00381 0.20 -0.3
412,717 - OHPLBJKB_00381 0.20 +0.4
412,717 - OHPLBJKB_00381 0.20 +0.0
412,717 - OHPLBJKB_00381 0.20 +1.3
412,717 - OHPLBJKB_00381 0.20 -0.6
412,717 - OHPLBJKB_00381 0.20 +1.1
412,717 - OHPLBJKB_00381 0.20 -1.0
412,717 - OHPLBJKB_00381 0.20 +0.7
412,718 + OHPLBJKB_00381 0.21 -0.6
412,718 + OHPLBJKB_00381 0.21 -0.9
412,718 + OHPLBJKB_00381 0.21 -0.2
412,718 + OHPLBJKB_00381 0.21 +0.0
412,718 + OHPLBJKB_00381 0.21 -0.1
412,719 - OHPLBJKB_00381 0.21 -1.4
412,719 - OHPLBJKB_00381 0.21 -0.4
412,719 - OHPLBJKB_00381 0.21 -0.3
412,719 - OHPLBJKB_00381 0.21 -0.3
412,719 - OHPLBJKB_00381 0.21 +0.8
412,719 - OHPLBJKB_00381 0.21 -0.5
412,719 - OHPLBJKB_00381 0.21 +0.2
412,719 - OHPLBJKB_00381 0.21 -0.8
412,719 - OHPLBJKB_00381 0.21 +0.5
412,719 - OHPLBJKB_00381 0.21 -0.2
412,719 - OHPLBJKB_00381 0.21 +0.3
412,719 - OHPLBJKB_00381 0.21 +1.2
412,722 + OHPLBJKB_00381 0.22 -0.3
412,722 + OHPLBJKB_00381 0.22 +0.5
412,723 - OHPLBJKB_00381 0.22 -1.6
412,723 - OHPLBJKB_00381 0.22 -0.2
412,723 - OHPLBJKB_00381 0.22 -0.4
412,723 - OHPLBJKB_00381 0.22 -0.6
412,735 - OHPLBJKB_00381 0.25 -0.7
412,827 + OHPLBJKB_00381 0.47 -0.8
412,827 + OHPLBJKB_00381 0.47 -0.5
412,868 + OHPLBJKB_00381 0.56 -0.5
412,868 + OHPLBJKB_00381 0.56 -0.2
412,869 - OHPLBJKB_00381 0.57 +0.7
413,008 - OHPLBJKB_00381 0.90 -0.2
413,008 - OHPLBJKB_00381 0.90 +1.3
413,125 + +0.4
413,175 + -1.0
413,175 + +1.6
413,175 + -1.0

Or see this region's nucleotide sequence