Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05198 and BACOVA_05199 are separated by 43 nucleotides BACOVA_05199 and BACOVA_05200 are separated by 3 nucleotides BACOVA_05200 and BACOVA_05201 are separated by 119 nucleotides
BACOVA_05198: BACOVA_05198 - tetratricopeptide repeat protein, at 697,472 to 698,797
_05198
BACOVA_05199: BACOVA_05199 - hypothetical protein, at 698,841 to 699,455
_05199
BACOVA_05200: BACOVA_05200 - CBS domain protein, at 699,459 to 700,715
_05200
BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976
_05201
Position (kb) 699
700
701 Strain fitness (log2 ratio) -2
-1
0
1 at 699.468 kb on + strand at 699.468 kb on + strand at 699.471 kb on - strand at 699.471 kb on - strand at 699.579 kb on - strand at 699.597 kb on - strand, within BACOVA_05200 at 699.629 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.667 kb on - strand, within BACOVA_05200 at 699.671 kb on + strand, within BACOVA_05200 at 699.671 kb on + strand, within BACOVA_05200 at 699.672 kb on - strand, within BACOVA_05200 at 699.723 kb on - strand, within BACOVA_05200 at 699.768 kb on - strand, within BACOVA_05200 at 699.770 kb on + strand, within BACOVA_05200 at 699.770 kb on + strand, within BACOVA_05200 at 699.864 kb on + strand, within BACOVA_05200 at 699.865 kb on - strand, within BACOVA_05200 at 699.874 kb on + strand, within BACOVA_05200 at 699.877 kb on - strand, within BACOVA_05200 at 699.881 kb on + strand, within BACOVA_05200 at 699.941 kb on + strand, within BACOVA_05200 at 700.197 kb on + strand, within BACOVA_05200 at 700.198 kb on - strand, within BACOVA_05200 at 700.227 kb on + strand, within BACOVA_05200 at 700.230 kb on - strand, within BACOVA_05200 at 700.320 kb on - strand, within BACOVA_05200 at 700.337 kb on + strand, within BACOVA_05200 at 700.338 kb on - strand, within BACOVA_05200 at 700.386 kb on - strand, within BACOVA_05200 at 700.399 kb on + strand, within BACOVA_05200 at 700.426 kb on + strand, within BACOVA_05200 at 700.436 kb on + strand, within BACOVA_05200 at 700.458 kb on - strand, within BACOVA_05200 at 700.465 kb on - strand, within BACOVA_05200 at 700.465 kb on - strand, within BACOVA_05200 at 700.469 kb on + strand, within BACOVA_05200 at 700.495 kb on - strand, within BACOVA_05200 at 700.569 kb on + strand, within BACOVA_05200 at 700.660 kb on + strand at 700.700 kb on - strand at 700.722 kb on + strand at 700.723 kb on - strand at 700.756 kb on + strand at 700.811 kb on + strand at 701.477 kb on + strand, within BACOVA_05201
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 699,468 + -0.4 699,468 + +0.2 699,471 - +0.7 699,471 - -0.7 699,579 - -1.3 699,597 - BACOVA_05200 0.11 -0.7 699,629 + BACOVA_05200 0.14 +0.9 699,666 + BACOVA_05200 0.16 +0.9 699,666 + BACOVA_05200 0.16 +0.1 699,666 + BACOVA_05200 0.16 +0.2 699,666 + BACOVA_05200 0.16 +0.6 699,667 - BACOVA_05200 0.17 -0.3 699,671 + BACOVA_05200 0.17 +0.3 699,671 + BACOVA_05200 0.17 +0.2 699,672 - BACOVA_05200 0.17 +0.3 699,723 - BACOVA_05200 0.21 -0.9 699,768 - BACOVA_05200 0.25 -0.8 699,770 + BACOVA_05200 0.25 +0.8 699,770 + BACOVA_05200 0.25 -0.8 699,864 + BACOVA_05200 0.32 +0.8 699,865 - BACOVA_05200 0.32 -1.2 699,874 + BACOVA_05200 0.33 +0.3 699,877 - BACOVA_05200 0.33 +0.1 699,881 + BACOVA_05200 0.34 -1.4 699,941 + BACOVA_05200 0.38 -0.7 700,197 + BACOVA_05200 0.59 -1.3 700,198 - BACOVA_05200 0.59 -0.9 700,227 + BACOVA_05200 0.61 +1.4 700,230 - BACOVA_05200 0.61 -1.4 700,320 - BACOVA_05200 0.68 -1.9 700,337 + BACOVA_05200 0.70 -0.7 700,338 - BACOVA_05200 0.70 -0.9 700,386 - BACOVA_05200 0.74 -1.0 700,399 + BACOVA_05200 0.75 -1.6 700,426 + BACOVA_05200 0.77 -0.3 700,436 + BACOVA_05200 0.78 -0.4 700,458 - BACOVA_05200 0.79 -0.4 700,465 - BACOVA_05200 0.80 -0.9 700,465 - BACOVA_05200 0.80 +0.1 700,469 + BACOVA_05200 0.80 -0.0 700,495 - BACOVA_05200 0.82 -0.8 700,569 + BACOVA_05200 0.88 -1.6 700,660 + -0.9 700,700 - -0.4 700,722 + -0.4 700,723 - -1.4 700,756 + -1.6 700,811 + +1.7 701,477 + BACOVA_05201 0.30 -0.9
Or see this region's nucleotide sequence