Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04727 and BACOVA_04728 are separated by 14 nucleotides BACOVA_04728 and BACOVA_04729 are separated by 14 nucleotides BACOVA_04729 and BACOVA_04730 overlap by 20 nucleotides BACOVA_04730 and BACOVA_04731 overlap by 4 nucleotides
BACOVA_04727: BACOVA_04727 - hypothetical protein, at 90,974 to 91,639
_04727
BACOVA_04728: BACOVA_04728 - hypothetical protein, at 91,654 to 92,337
_04728
BACOVA_04729: BACOVA_04729 - hypothetical protein, at 92,352 to 93,041
_04729
BACOVA_04730: BACOVA_04730 - hypothetical protein, at 93,022 to 93,519
_04730
BACOVA_04731: BACOVA_04731 - hypothetical protein, at 93,516 to 94,904
_04731
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2 at 91.612 kb on - strand at 91.639 kb on + strand at 91.708 kb on + strand at 91.708 kb on + strand at 91.778 kb on + strand, within BACOVA_04728 at 91.846 kb on + strand, within BACOVA_04728 at 92.031 kb on + strand, within BACOVA_04728 at 92.067 kb on - strand, within BACOVA_04728 at 92.068 kb on + strand, within BACOVA_04728 at 92.089 kb on + strand, within BACOVA_04728 at 92.111 kb on + strand, within BACOVA_04728 at 92.237 kb on + strand, within BACOVA_04728 at 92.309 kb on - strand at 92.317 kb on + strand at 92.354 kb on - strand at 92.467 kb on + strand, within BACOVA_04729 at 92.467 kb on + strand, within BACOVA_04729 at 92.468 kb on - strand, within BACOVA_04729 at 92.470 kb on + strand, within BACOVA_04729 at 92.471 kb on - strand, within BACOVA_04729 at 92.475 kb on + strand, within BACOVA_04729 at 92.497 kb on - strand, within BACOVA_04729 at 92.571 kb on - strand, within BACOVA_04729 at 92.647 kb on + strand, within BACOVA_04729 at 92.664 kb on + strand, within BACOVA_04729 at 92.749 kb on + strand, within BACOVA_04729 at 92.811 kb on - strand, within BACOVA_04729 at 92.812 kb on + strand, within BACOVA_04729 at 92.904 kb on + strand, within BACOVA_04729 at 92.904 kb on + strand, within BACOVA_04729 at 93.024 kb on - strand at 93.041 kb on + strand at 93.041 kb on + strand at 93.042 kb on - strand at 93.042 kb on - strand at 93.043 kb on + strand at 93.114 kb on + strand, within BACOVA_04730 at 93.228 kb on - strand, within BACOVA_04730 at 93.228 kb on - strand, within BACOVA_04730 at 93.228 kb on - strand, within BACOVA_04730 at 93.240 kb on - strand, within BACOVA_04730 at 93.240 kb on - strand, within BACOVA_04730 at 93.240 kb on - strand, within BACOVA_04730 at 93.277 kb on - strand, within BACOVA_04730 at 93.299 kb on + strand, within BACOVA_04730 at 93.299 kb on + strand, within BACOVA_04730 at 93.317 kb on + strand, within BACOVA_04730 at 93.338 kb on - strand, within BACOVA_04730 at 93.405 kb on - strand, within BACOVA_04730 at 93.405 kb on - strand, within BACOVA_04730 at 93.405 kb on - strand, within BACOVA_04730 at 93.428 kb on - strand, within BACOVA_04730 at 93.637 kb on + strand at 93.638 kb on - strand at 93.641 kb on + strand at 93.642 kb on - strand at 93.721 kb on + strand, within BACOVA_04731 at 93.721 kb on + strand, within BACOVA_04731 at 93.721 kb on + strand, within BACOVA_04731 at 93.737 kb on + strand, within BACOVA_04731 at 93.753 kb on + strand, within BACOVA_04731 at 93.818 kb on - strand, within BACOVA_04731 at 93.858 kb on + strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.859 kb on - strand, within BACOVA_04731 at 93.953 kb on - strand, within BACOVA_04731
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 91,612 - -2.5 91,639 + +1.1 91,708 + +0.3 91,708 + +0.5 91,778 + BACOVA_04728 0.18 -0.6 91,846 + BACOVA_04728 0.28 -0.1 92,031 + BACOVA_04728 0.55 -0.1 92,067 - BACOVA_04728 0.60 -0.1 92,068 + BACOVA_04728 0.61 +0.5 92,089 + BACOVA_04728 0.64 +0.1 92,111 + BACOVA_04728 0.67 -0.9 92,237 + BACOVA_04728 0.85 -1.1 92,309 - +1.3 92,317 + -0.2 92,354 - -0.4 92,467 + BACOVA_04729 0.17 +0.3 92,467 + BACOVA_04729 0.17 +0.4 92,468 - BACOVA_04729 0.17 -1.2 92,470 + BACOVA_04729 0.17 -0.4 92,471 - BACOVA_04729 0.17 -0.5 92,475 + BACOVA_04729 0.18 -1.8 92,497 - BACOVA_04729 0.21 -0.8 92,571 - BACOVA_04729 0.32 -1.6 92,647 + BACOVA_04729 0.43 +0.7 92,664 + BACOVA_04729 0.45 -1.7 92,749 + BACOVA_04729 0.58 -0.2 92,811 - BACOVA_04729 0.67 -2.1 92,812 + BACOVA_04729 0.67 +2.1 92,904 + BACOVA_04729 0.80 +1.5 92,904 + BACOVA_04729 0.80 -0.6 93,024 - +0.3 93,041 + +0.9 93,041 + -1.2 93,042 - +1.4 93,042 - -1.9 93,043 + +1.0 93,114 + BACOVA_04730 0.18 -0.6 93,228 - BACOVA_04730 0.41 -1.1 93,228 - BACOVA_04730 0.41 -1.4 93,228 - BACOVA_04730 0.41 -0.8 93,240 - BACOVA_04730 0.44 -0.6 93,240 - BACOVA_04730 0.44 +1.1 93,240 - BACOVA_04730 0.44 +2.3 93,277 - BACOVA_04730 0.51 +1.3 93,299 + BACOVA_04730 0.56 -0.4 93,299 + BACOVA_04730 0.56 -0.4 93,317 + BACOVA_04730 0.59 -1.2 93,338 - BACOVA_04730 0.63 +1.6 93,405 - BACOVA_04730 0.77 -0.0 93,405 - BACOVA_04730 0.77 -1.1 93,405 - BACOVA_04730 0.77 -0.5 93,428 - BACOVA_04730 0.82 -0.3 93,637 + -0.0 93,638 - -1.1 93,641 + -0.7 93,642 - -0.0 93,721 + BACOVA_04731 0.15 -0.0 93,721 + BACOVA_04731 0.15 -1.0 93,721 + BACOVA_04731 0.15 +1.7 93,737 + BACOVA_04731 0.16 +0.4 93,753 + BACOVA_04731 0.17 -0.2 93,818 - BACOVA_04731 0.22 -0.1 93,858 + BACOVA_04731 0.25 +0.4 93,859 - BACOVA_04731 0.25 -1.4 93,859 - BACOVA_04731 0.25 -1.3 93,859 - BACOVA_04731 0.25 -0.6 93,859 - BACOVA_04731 0.25 -0.7 93,953 - BACOVA_04731 0.31 +0.4
Or see this region's nucleotide sequence