Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04691

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04689 and BACOVA_04690 are separated by 3 nucleotidesBACOVA_04690 and BACOVA_04691 overlap by 4 nucleotidesBACOVA_04691 and BACOVA_04692 overlap by 10 nucleotidesBACOVA_04692 and BACOVA_04693 overlap by 17 nucleotides BACOVA_04689: BACOVA_04689 - hypothetical protein, at 58,273 to 59,322 _04689 BACOVA_04690: BACOVA_04690 - hypothetical protein, at 59,326 to 59,796 _04690 BACOVA_04691: BACOVA_04691 - hypothetical protein, at 59,793 to 60,194 _04691 BACOVA_04692: BACOVA_04692 - hypothetical protein, at 60,185 to 60,775 _04692 BACOVA_04693: BACOVA_04693 - hypothetical protein, at 60,759 to 61,610 _04693 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 59.015 kb on - strand, within BACOVA_04689at 59.342 kb on - strandat 59.344 kb on - strandat 59.349 kb on + strandat 59.349 kb on + strandat 59.444 kb on - strand, within BACOVA_04690at 59.453 kb on + strand, within BACOVA_04690at 59.453 kb on - strand, within BACOVA_04690at 59.453 kb on - strand, within BACOVA_04690at 59.463 kb on + strand, within BACOVA_04690at 59.509 kb on - strand, within BACOVA_04690at 59.509 kb on - strand, within BACOVA_04690at 59.551 kb on - strand, within BACOVA_04690at 59.581 kb on - strand, within BACOVA_04690at 59.593 kb on + strand, within BACOVA_04690at 59.644 kb on - strand, within BACOVA_04690at 59.657 kb on + strand, within BACOVA_04690at 59.657 kb on + strand, within BACOVA_04690at 59.680 kb on + strand, within BACOVA_04690at 59.806 kb on + strandat 59.824 kb on - strandat 59.824 kb on - strandat 59.885 kb on + strand, within BACOVA_04691at 59.885 kb on + strand, within BACOVA_04691at 59.885 kb on + strand, within BACOVA_04691at 59.963 kb on - strand, within BACOVA_04691at 59.963 kb on - strand, within BACOVA_04691at 60.041 kb on + strand, within BACOVA_04691at 60.076 kb on - strand, within BACOVA_04691at 60.180 kb on + strandat 60.185 kb on - strandat 60.185 kb on - strandat 60.222 kb on + strandat 60.281 kb on + strand, within BACOVA_04692at 60.282 kb on - strand, within BACOVA_04692at 60.320 kb on + strand, within BACOVA_04692at 60.320 kb on + strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.331 kb on - strand, within BACOVA_04692at 60.339 kb on + strand, within BACOVA_04692at 60.340 kb on - strand, within BACOVA_04692at 60.359 kb on + strand, within BACOVA_04692at 60.360 kb on - strand, within BACOVA_04692at 60.363 kb on + strand, within BACOVA_04692at 60.363 kb on + strand, within BACOVA_04692at 60.364 kb on - strand, within BACOVA_04692at 60.364 kb on - strand, within BACOVA_04692at 60.379 kb on + strand, within BACOVA_04692at 60.380 kb on - strand, within BACOVA_04692at 60.400 kb on - strand, within BACOVA_04692at 60.536 kb on + strand, within BACOVA_04692at 60.537 kb on - strand, within BACOVA_04692at 60.557 kb on - strand, within BACOVA_04692at 60.560 kb on + strand, within BACOVA_04692at 60.730 kb on - strandat 60.740 kb on + strandat 60.741 kb on - strandat 60.741 kb on - strandat 60.785 kb on - strandat 60.814 kb on + strandat 60.823 kb on - strandat 60.868 kb on - strand, within BACOVA_04693at 60.930 kb on + strand, within BACOVA_04693at 61.091 kb on - strand, within BACOVA_04693at 61.091 kb on - strand, within BACOVA_04693at 61.163 kb on - strand, within BACOVA_04693at 61.163 kb on - strand, within BACOVA_04693

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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59,015 - BACOVA_04689 0.71 -1.5
59,342 - +1.7
59,344 - +0.6
59,349 + -1.3
59,349 + -1.7
59,444 - BACOVA_04690 0.25 -0.5
59,453 + BACOVA_04690 0.27 -0.0
59,453 - BACOVA_04690 0.27 +0.1
59,453 - BACOVA_04690 0.27 +0.4
59,463 + BACOVA_04690 0.29 -1.1
59,509 - BACOVA_04690 0.39 +0.2
59,509 - BACOVA_04690 0.39 +0.3
59,551 - BACOVA_04690 0.48 -0.4
59,581 - BACOVA_04690 0.54 -0.3
59,593 + BACOVA_04690 0.57 -0.9
59,644 - BACOVA_04690 0.68 +0.8
59,657 + BACOVA_04690 0.70 +0.8
59,657 + BACOVA_04690 0.70 +0.0
59,680 + BACOVA_04690 0.75 -1.1
59,806 + -2.0
59,824 - +0.9
59,824 - -0.1
59,885 + BACOVA_04691 0.23 -0.2
59,885 + BACOVA_04691 0.23 +0.5
59,885 + BACOVA_04691 0.23 +0.2
59,963 - BACOVA_04691 0.42 -1.1
59,963 - BACOVA_04691 0.42 -0.9
60,041 + BACOVA_04691 0.62 -1.4
60,076 - BACOVA_04691 0.70 -0.9
60,180 + -0.4
60,185 - +1.2
60,185 - +0.8
60,222 + -0.9
60,281 + BACOVA_04692 0.16 +0.3
60,282 - BACOVA_04692 0.16 -0.2
60,320 + BACOVA_04692 0.23 -0.7
60,320 + BACOVA_04692 0.23 -0.9
60,321 - BACOVA_04692 0.23 -0.7
60,321 - BACOVA_04692 0.23 +0.2
60,321 - BACOVA_04692 0.23 -0.7
60,331 - BACOVA_04692 0.25 -0.2
60,339 + BACOVA_04692 0.26 +0.9
60,340 - BACOVA_04692 0.26 -0.2
60,359 + BACOVA_04692 0.29 +0.0
60,360 - BACOVA_04692 0.30 -0.1
60,363 + BACOVA_04692 0.30 -1.4
60,363 + BACOVA_04692 0.30 -0.1
60,364 - BACOVA_04692 0.30 -0.9
60,364 - BACOVA_04692 0.30 +0.2
60,379 + BACOVA_04692 0.33 -0.3
60,380 - BACOVA_04692 0.33 -0.1
60,400 - BACOVA_04692 0.36 +1.9
60,536 + BACOVA_04692 0.59 -1.4
60,537 - BACOVA_04692 0.60 -0.0
60,557 - BACOVA_04692 0.63 +0.0
60,560 + BACOVA_04692 0.63 -0.5
60,730 - -1.3
60,740 + -0.9
60,741 - +1.2
60,741 - -0.3
60,785 - -0.8
60,814 + -0.5
60,823 - +2.0
60,868 - BACOVA_04693 0.13 +1.2
60,930 + BACOVA_04693 0.20 -0.3
61,091 - BACOVA_04693 0.39 -0.4
61,091 - BACOVA_04693 0.39 +0.7
61,163 - BACOVA_04693 0.47 +0.8
61,163 - BACOVA_04693 0.47 +0.8

Or see this region's nucleotide sequence