Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04059

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04058 and BACOVA_04057 overlap by 14 nucleotidesBACOVA_04057 and BACOVA_04059 are separated by 26 nucleotidesBACOVA_04059 and BACOVA_04060 overlap by 4 nucleotidesBACOVA_04060 and BACOVA_04061 are separated by 4 nucleotides BACOVA_04058: BACOVA_04058 - transporter, SSS family, at 389,911 to 391,362 _04058 BACOVA_04057: BACOVA_04057 - recombination protein RecR, at 391,349 to 392,074 _04057 BACOVA_04059: BACOVA_04059 - hypothetical protein, at 392,101 to 392,559 _04059 BACOVA_04060: BACOVA_04060 - acetyltransferase, GNAT family, at 392,556 to 393,092 _04060 BACOVA_04061: BACOVA_04061 - putative ACR, COG1678, at 393,097 to 393,687 _04061 Position (kb) 392 393Strain fitness (log2 ratio) -2 -1 0 1 2at 391.105 kb on - strand, within BACOVA_04058at 391.152 kb on + strand, within BACOVA_04058at 391.153 kb on - strand, within BACOVA_04058at 391.154 kb on + strand, within BACOVA_04058at 391.155 kb on - strand, within BACOVA_04058at 391.241 kb on - strandat 391.241 kb on - strandat 391.242 kb on + strandat 391.244 kb on + strandat 391.244 kb on + strandat 391.324 kb on + strandat 391.354 kb on + strandat 391.355 kb on - strandat 391.355 kb on - strandat 391.355 kb on - strandat 391.358 kb on - strandat 391.377 kb on - strandat 391.456 kb on + strand, within BACOVA_04057at 391.477 kb on + strand, within BACOVA_04057at 391.477 kb on + strand, within BACOVA_04057at 391.479 kb on + strand, within BACOVA_04057at 391.603 kb on + strand, within BACOVA_04057at 391.609 kb on - strand, within BACOVA_04057at 391.651 kb on + strand, within BACOVA_04057at 391.775 kb on + strand, within BACOVA_04057at 391.919 kb on - strand, within BACOVA_04057at 391.928 kb on + strand, within BACOVA_04057at 391.931 kb on - strand, within BACOVA_04057at 391.949 kb on - strand, within BACOVA_04057at 391.975 kb on - strand, within BACOVA_04057at 392.008 kb on - strandat 392.009 kb on + strandat 392.080 kb on - strandat 392.226 kb on + strand, within BACOVA_04059at 392.242 kb on + strand, within BACOVA_04059at 392.344 kb on - strand, within BACOVA_04059at 392.402 kb on - strand, within BACOVA_04059at 392.406 kb on - strand, within BACOVA_04059at 392.409 kb on + strand, within BACOVA_04059at 392.410 kb on - strand, within BACOVA_04059at 392.434 kb on + strand, within BACOVA_04059at 392.434 kb on + strand, within BACOVA_04059at 392.622 kb on - strand, within BACOVA_04060at 392.624 kb on - strand, within BACOVA_04060at 392.691 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.709 kb on - strand, within BACOVA_04060at 392.749 kb on + strand, within BACOVA_04060at 392.750 kb on - strand, within BACOVA_04060at 392.784 kb on - strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.801 kb on + strand, within BACOVA_04060at 392.804 kb on + strand, within BACOVA_04060at 392.805 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.963 kb on + strand, within BACOVA_04060at 393.084 kb on - strandat 393.108 kb on + strandat 393.151 kb on + strandat 393.151 kb on + strandat 393.152 kb on + strandat 393.178 kb on - strand, within BACOVA_04061at 393.203 kb on + strand, within BACOVA_04061at 393.204 kb on - strand, within BACOVA_04061at 393.253 kb on - strand, within BACOVA_04061at 393.256 kb on + strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.330 kb on + strand, within BACOVA_04061at 393.333 kb on - strand, within BACOVA_04061at 393.366 kb on - strand, within BACOVA_04061at 393.399 kb on + strand, within BACOVA_04061at 393.400 kb on - strand, within BACOVA_04061at 393.406 kb on + strand, within BACOVA_04061at 393.407 kb on - strand, within BACOVA_04061at 393.425 kb on - strand, within BACOVA_04061at 393.442 kb on - strand, within BACOVA_04061at 393.476 kb on + strand, within BACOVA_04061at 393.502 kb on - strand, within BACOVA_04061

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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391,105 - BACOVA_04058 0.82 -1.2
391,152 + BACOVA_04058 0.85 -1.0
391,153 - BACOVA_04058 0.86 +2.1
391,154 + BACOVA_04058 0.86 +0.1
391,155 - BACOVA_04058 0.86 -0.2
391,241 - +1.6
391,241 - +1.1
391,242 + -2.2
391,244 + +0.2
391,244 + +0.3
391,324 + +0.9
391,354 + +0.5
391,355 - -0.0
391,355 - +0.5
391,355 - -1.3
391,358 - +0.8
391,377 - +0.1
391,456 + BACOVA_04057 0.15 -0.9
391,477 + BACOVA_04057 0.18 -0.8
391,477 + BACOVA_04057 0.18 -0.1
391,479 + BACOVA_04057 0.18 +1.1
391,603 + BACOVA_04057 0.35 +0.5
391,609 - BACOVA_04057 0.36 -1.6
391,651 + BACOVA_04057 0.42 -1.0
391,775 + BACOVA_04057 0.59 +0.2
391,919 - BACOVA_04057 0.79 +1.3
391,928 + BACOVA_04057 0.80 +0.5
391,931 - BACOVA_04057 0.80 -1.2
391,949 - BACOVA_04057 0.83 +2.3
391,975 - BACOVA_04057 0.86 -2.0
392,008 - -0.5
392,009 + -1.0
392,080 - -0.2
392,226 + BACOVA_04059 0.27 -0.9
392,242 + BACOVA_04059 0.31 -0.7
392,344 - BACOVA_04059 0.53 +1.7
392,402 - BACOVA_04059 0.66 -0.2
392,406 - BACOVA_04059 0.66 -0.5
392,409 + BACOVA_04059 0.67 -0.4
392,410 - BACOVA_04059 0.67 -1.0
392,434 + BACOVA_04059 0.73 -0.0
392,434 + BACOVA_04059 0.73 +0.5
392,622 - BACOVA_04060 0.12 -0.9
392,624 - BACOVA_04060 0.13 -1.6
392,691 + BACOVA_04060 0.25 -2.1
392,708 + BACOVA_04060 0.28 -1.2
392,708 + BACOVA_04060 0.28 +0.8
392,708 + BACOVA_04060 0.28 -2.5
392,709 - BACOVA_04060 0.28 +0.5
392,749 + BACOVA_04060 0.36 -0.9
392,750 - BACOVA_04060 0.36 -0.5
392,784 - BACOVA_04060 0.42 -1.2
392,792 + BACOVA_04060 0.44 +0.3
392,792 + BACOVA_04060 0.44 -0.2
392,801 + BACOVA_04060 0.46 -0.5
392,804 + BACOVA_04060 0.46 -1.8
392,805 - BACOVA_04060 0.46 -0.7
392,944 - BACOVA_04060 0.72 -1.2
392,944 - BACOVA_04060 0.72 -0.7
392,963 + BACOVA_04060 0.76 -0.7
393,084 - -2.1
393,108 + -0.0
393,151 + -0.3
393,151 + +0.5
393,152 + -0.2
393,178 - BACOVA_04061 0.14 -1.8
393,203 + BACOVA_04061 0.18 -1.4
393,204 - BACOVA_04061 0.18 +1.7
393,253 - BACOVA_04061 0.26 -0.4
393,256 + BACOVA_04061 0.27 -1.9
393,326 - BACOVA_04061 0.39 -1.2
393,326 - BACOVA_04061 0.39 -0.1
393,330 + BACOVA_04061 0.39 +1.1
393,333 - BACOVA_04061 0.40 +1.3
393,366 - BACOVA_04061 0.46 -0.7
393,399 + BACOVA_04061 0.51 +0.8
393,400 - BACOVA_04061 0.51 -0.9
393,406 + BACOVA_04061 0.52 +0.1
393,407 - BACOVA_04061 0.52 -0.7
393,425 - BACOVA_04061 0.55 +0.1
393,442 - BACOVA_04061 0.58 -0.5
393,476 + BACOVA_04061 0.64 -0.2
393,502 - BACOVA_04061 0.69 +1.2

Or see this region's nucleotide sequence