Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04046

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04045 and BACOVA_04046 are separated by 69 nucleotidesBACOVA_04046 and BACOVA_04048 are separated by 17 nucleotidesBACOVA_04048 and BACOVA_04047 overlap by 25 nucleotides BACOVA_04045: BACOVA_04045 - TonB-dependent receptor, at 376,850 to 379,072 _04045 BACOVA_04046: BACOVA_04046 - heavy metal-associated domain protein, at 379,142 to 379,465 _04046 BACOVA_04048: BACOVA_04048 - hypothetical protein, at 379,483 to 379,587 _04048 BACOVA_04047: BACOVA_04047 - copper-exporting ATPase, at 379,563 to 381,773 _04047 Position (kb) 379 380Strain fitness (log2 ratio) -2 -1 0 1 2at 378.168 kb on - strand, within BACOVA_04045at 378.177 kb on - strand, within BACOVA_04045at 378.179 kb on - strand, within BACOVA_04045at 378.179 kb on - strand, within BACOVA_04045at 378.231 kb on - strand, within BACOVA_04045at 378.231 kb on - strand, within BACOVA_04045at 378.231 kb on - strand, within BACOVA_04045at 378.293 kb on + strand, within BACOVA_04045at 378.294 kb on - strand, within BACOVA_04045at 378.359 kb on + strand, within BACOVA_04045at 378.391 kb on - strand, within BACOVA_04045at 378.391 kb on - strand, within BACOVA_04045at 378.426 kb on - strand, within BACOVA_04045at 378.446 kb on + strand, within BACOVA_04045at 378.447 kb on - strand, within BACOVA_04045at 378.447 kb on - strand, within BACOVA_04045at 378.449 kb on - strand, within BACOVA_04045at 378.495 kb on - strand, within BACOVA_04045at 378.496 kb on + strand, within BACOVA_04045at 378.711 kb on - strand, within BACOVA_04045at 378.810 kb on - strand, within BACOVA_04045at 378.927 kb on + strandat 379.064 kb on - strandat 379.071 kb on - strandat 379.108 kb on - strandat 379.111 kb on - strandat 379.191 kb on + strand, within BACOVA_04046at 379.228 kb on - strand, within BACOVA_04046at 379.232 kb on - strand, within BACOVA_04046at 379.282 kb on + strand, within BACOVA_04046at 379.310 kb on - strand, within BACOVA_04046at 379.350 kb on - strand, within BACOVA_04046at 379.371 kb on + strand, within BACOVA_04046at 379.372 kb on - strand, within BACOVA_04046at 379.372 kb on - strand, within BACOVA_04046at 379.396 kb on + strand, within BACOVA_04046at 379.476 kb on - strandat 379.555 kb on - strand, within BACOVA_04048at 379.556 kb on + strand, within BACOVA_04048at 379.556 kb on + strand, within BACOVA_04048at 379.560 kb on + strand, within BACOVA_04048at 379.561 kb on - strand, within BACOVA_04048at 379.563 kb on - strandat 379.563 kb on - strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.600 kb on + strandat 379.601 kb on + strandat 379.676 kb on + strandat 379.691 kb on + strandat 379.691 kb on + strandat 379.692 kb on - strandat 379.765 kb on - strandat 379.765 kb on - strandat 379.820 kb on + strand, within BACOVA_04047at 379.821 kb on - strand, within BACOVA_04047at 379.827 kb on + strand, within BACOVA_04047at 379.828 kb on - strand, within BACOVA_04047at 379.870 kb on + strand, within BACOVA_04047at 379.873 kb on + strand, within BACOVA_04047at 379.885 kb on + strand, within BACOVA_04047at 379.886 kb on - strand, within BACOVA_04047at 379.914 kb on + strand, within BACOVA_04047at 379.920 kb on - strand, within BACOVA_04047at 379.936 kb on + strand, within BACOVA_04047at 380.000 kb on + strand, within BACOVA_04047at 380.006 kb on - strand, within BACOVA_04047at 380.006 kb on - strand, within BACOVA_04047at 380.018 kb on + strand, within BACOVA_04047at 380.024 kb on + strand, within BACOVA_04047at 380.039 kb on + strand, within BACOVA_04047at 380.040 kb on - strand, within BACOVA_04047at 380.042 kb on + strand, within BACOVA_04047at 380.042 kb on + strand, within BACOVA_04047at 380.128 kb on - strand, within BACOVA_04047at 380.148 kb on - strand, within BACOVA_04047at 380.148 kb on - strand, within BACOVA_04047at 380.217 kb on - strand, within BACOVA_04047at 380.336 kb on - strand, within BACOVA_04047at 380.370 kb on + strand, within BACOVA_04047at 380.371 kb on - strand, within BACOVA_04047at 380.430 kb on - strand, within BACOVA_04047

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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378,168 - BACOVA_04045 0.59 +0.1
378,177 - BACOVA_04045 0.60 +0.9
378,179 - BACOVA_04045 0.60 +0.2
378,179 - BACOVA_04045 0.60 -1.2
378,231 - BACOVA_04045 0.62 -1.0
378,231 - BACOVA_04045 0.62 -0.7
378,231 - BACOVA_04045 0.62 +1.4
378,293 + BACOVA_04045 0.65 +0.5
378,294 - BACOVA_04045 0.65 +0.3
378,359 + BACOVA_04045 0.68 -0.7
378,391 - BACOVA_04045 0.69 -2.3
378,391 - BACOVA_04045 0.69 +0.7
378,426 - BACOVA_04045 0.71 -0.7
378,446 + BACOVA_04045 0.72 -0.7
378,447 - BACOVA_04045 0.72 -0.7
378,447 - BACOVA_04045 0.72 -0.2
378,449 - BACOVA_04045 0.72 +1.5
378,495 - BACOVA_04045 0.74 +0.7
378,496 + BACOVA_04045 0.74 -0.3
378,711 - BACOVA_04045 0.84 -1.2
378,810 - BACOVA_04045 0.88 +1.5
378,927 + -0.5
379,064 - -1.7
379,071 - +1.0
379,108 - +1.2
379,111 - -1.0
379,191 + BACOVA_04046 0.15 -1.2
379,228 - BACOVA_04046 0.27 +1.0
379,232 - BACOVA_04046 0.28 -2.1
379,282 + BACOVA_04046 0.43 -0.0
379,310 - BACOVA_04046 0.52 +1.5
379,350 - BACOVA_04046 0.64 -0.2
379,371 + BACOVA_04046 0.71 +0.9
379,372 - BACOVA_04046 0.71 -1.7
379,372 - BACOVA_04046 0.71 +1.3
379,396 + BACOVA_04046 0.78 +0.1
379,476 - +0.1
379,555 - BACOVA_04048 0.69 -0.5
379,556 + BACOVA_04048 0.70 -0.3
379,556 + BACOVA_04048 0.70 -2.3
379,560 + BACOVA_04048 0.73 -0.5
379,561 - BACOVA_04048 0.74 -0.3
379,563 - -0.8
379,563 - +1.5
379,598 + +1.1
379,598 + +1.0
379,600 + -0.4
379,601 + +1.2
379,676 + -0.7
379,691 + +0.7
379,691 + -0.6
379,692 - +0.9
379,765 - +1.4
379,765 - -2.6
379,820 + BACOVA_04047 0.12 -1.0
379,821 - BACOVA_04047 0.12 +1.2
379,827 + BACOVA_04047 0.12 +0.4
379,828 - BACOVA_04047 0.12 -0.3
379,870 + BACOVA_04047 0.14 +1.7
379,873 + BACOVA_04047 0.14 -0.3
379,885 + BACOVA_04047 0.15 +1.5
379,886 - BACOVA_04047 0.15 +0.7
379,914 + BACOVA_04047 0.16 -1.5
379,920 - BACOVA_04047 0.16 +1.0
379,936 + BACOVA_04047 0.17 -1.7
380,000 + BACOVA_04047 0.20 -0.2
380,006 - BACOVA_04047 0.20 -1.0
380,006 - BACOVA_04047 0.20 -0.1
380,018 + BACOVA_04047 0.21 -0.5
380,024 + BACOVA_04047 0.21 -0.9
380,039 + BACOVA_04047 0.22 +0.3
380,040 - BACOVA_04047 0.22 -0.3
380,042 + BACOVA_04047 0.22 +0.1
380,042 + BACOVA_04047 0.22 +0.3
380,128 - BACOVA_04047 0.26 -1.0
380,148 - BACOVA_04047 0.26 -0.6
380,148 - BACOVA_04047 0.26 +2.1
380,217 - BACOVA_04047 0.30 +0.9
380,336 - BACOVA_04047 0.35 +0.2
380,370 + BACOVA_04047 0.36 +0.9
380,371 - BACOVA_04047 0.37 +0.7
380,430 - BACOVA_04047 0.39 -0.4

Or see this region's nucleotide sequence