Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04032

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04030 and BACOVA_04031 overlap by 17 nucleotidesBACOVA_04031 and BACOVA_04032 are separated by 53 nucleotidesBACOVA_04032 and BACOVA_04033 are separated by 63 nucleotidesBACOVA_04033 and BACOVA_04034 are separated by 63 nucleotidesBACOVA_04034 and BACOVA_04035 are separated by 96 nucleotides BACOVA_04030: BACOVA_04030 - 4-phosphoerythronate dehydrogenase, at 363,386 to 364,306 _04030 BACOVA_04031: BACOVA_04031 - hypothetical protein, at 364,290 to 364,415 _04031 BACOVA_04032: BACOVA_04032 - hypothetical protein, at 364,469 to 365,716 _04032 BACOVA_04033: BACOVA_04033 - hypothetical protein, at 365,780 to 365,908 _04033 BACOVA_04034: BACOVA_04034 - putative YigZ family protein, at 365,972 to 366,589 _04034 BACOVA_04035: BACOVA_04035 - hypothetical protein, at 366,686 to 367,435 _04035 Position (kb) 364 365 366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 363.532 kb on + strand, within BACOVA_04030at 363.532 kb on + strand, within BACOVA_04030at 363.533 kb on - strand, within BACOVA_04030at 363.556 kb on + strand, within BACOVA_04030at 363.557 kb on - strand, within BACOVA_04030at 363.663 kb on + strand, within BACOVA_04030at 363.729 kb on + strand, within BACOVA_04030at 363.729 kb on + strand, within BACOVA_04030at 363.730 kb on - strand, within BACOVA_04030at 363.731 kb on + strand, within BACOVA_04030at 363.731 kb on + strand, within BACOVA_04030at 363.731 kb on + strand, within BACOVA_04030at 363.793 kb on + strand, within BACOVA_04030at 363.793 kb on + strand, within BACOVA_04030at 363.825 kb on + strand, within BACOVA_04030at 363.866 kb on + strand, within BACOVA_04030at 363.867 kb on - strand, within BACOVA_04030at 363.867 kb on - strand, within BACOVA_04030at 363.939 kb on - strand, within BACOVA_04030at 363.957 kb on + strand, within BACOVA_04030at 364.036 kb on + strand, within BACOVA_04030at 364.036 kb on + strand, within BACOVA_04030at 364.069 kb on + strand, within BACOVA_04030at 364.070 kb on - strand, within BACOVA_04030at 364.118 kb on + strand, within BACOVA_04030at 364.119 kb on - strand, within BACOVA_04030at 364.120 kb on + strand, within BACOVA_04030at 364.129 kb on + strand, within BACOVA_04030at 364.129 kb on + strand, within BACOVA_04030at 364.130 kb on - strand, within BACOVA_04030at 364.130 kb on - strand, within BACOVA_04030at 364.133 kb on - strand, within BACOVA_04030at 364.192 kb on + strand, within BACOVA_04030at 364.192 kb on + strand, within BACOVA_04030at 364.343 kb on + strand, within BACOVA_04031at 364.344 kb on - strand, within BACOVA_04031at 364.344 kb on - strand, within BACOVA_04031at 364.344 kb on - strand, within BACOVA_04031at 364.348 kb on + strand, within BACOVA_04031at 364.349 kb on - strand, within BACOVA_04031at 364.349 kb on - strand, within BACOVA_04031at 364.351 kb on + strand, within BACOVA_04031at 364.351 kb on + strand, within BACOVA_04031at 364.395 kb on + strand, within BACOVA_04031at 364.399 kb on + strand, within BACOVA_04031at 364.404 kb on + strandat 364.405 kb on - strandat 364.454 kb on + strandat 364.455 kb on - strandat 364.463 kb on - strandat 364.541 kb on + strandat 364.542 kb on - strandat 364.607 kb on - strand, within BACOVA_04032at 364.613 kb on - strand, within BACOVA_04032at 364.665 kb on - strand, within BACOVA_04032at 364.665 kb on - strand, within BACOVA_04032at 364.670 kb on - strand, within BACOVA_04032at 364.736 kb on + strand, within BACOVA_04032at 364.739 kb on + strand, within BACOVA_04032at 364.739 kb on + strand, within BACOVA_04032at 364.741 kb on + strand, within BACOVA_04032at 364.741 kb on + strand, within BACOVA_04032at 364.742 kb on - strand, within BACOVA_04032at 364.742 kb on - strand, within BACOVA_04032at 364.742 kb on - strand, within BACOVA_04032at 364.742 kb on - strand, within BACOVA_04032at 364.742 kb on - strand, within BACOVA_04032at 364.745 kb on + strand, within BACOVA_04032at 364.746 kb on - strand, within BACOVA_04032at 364.746 kb on - strand, within BACOVA_04032at 364.796 kb on + strand, within BACOVA_04032at 364.796 kb on + strand, within BACOVA_04032at 364.797 kb on - strand, within BACOVA_04032at 364.810 kb on + strand, within BACOVA_04032at 364.819 kb on + strand, within BACOVA_04032at 364.820 kb on - strand, within BACOVA_04032at 364.841 kb on - strand, within BACOVA_04032at 364.867 kb on + strand, within BACOVA_04032at 364.868 kb on - strand, within BACOVA_04032at 364.878 kb on + strand, within BACOVA_04032at 364.878 kb on + strand, within BACOVA_04032at 364.945 kb on + strand, within BACOVA_04032at 364.945 kb on + strand, within BACOVA_04032at 364.945 kb on + strand, within BACOVA_04032at 364.946 kb on - strand, within BACOVA_04032at 364.958 kb on + strand, within BACOVA_04032at 364.959 kb on - strand, within BACOVA_04032at 364.979 kb on + strand, within BACOVA_04032at 365.015 kb on - strand, within BACOVA_04032at 365.044 kb on + strand, within BACOVA_04032at 365.056 kb on + strand, within BACOVA_04032at 365.057 kb on - strand, within BACOVA_04032at 365.089 kb on + strand, within BACOVA_04032at 365.186 kb on + strand, within BACOVA_04032at 365.234 kb on + strand, within BACOVA_04032at 365.306 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.333 kb on + strand, within BACOVA_04032at 365.334 kb on - strand, within BACOVA_04032at 365.334 kb on - strand, within BACOVA_04032at 365.377 kb on + strand, within BACOVA_04032at 365.411 kb on + strand, within BACOVA_04032at 365.411 kb on + strand, within BACOVA_04032at 365.412 kb on - strand, within BACOVA_04032at 365.412 kb on - strand, within BACOVA_04032at 365.413 kb on + strand, within BACOVA_04032at 365.414 kb on - strand, within BACOVA_04032at 365.428 kb on + strand, within BACOVA_04032at 365.447 kb on - strand, within BACOVA_04032at 365.485 kb on + strand, within BACOVA_04032at 365.486 kb on - strand, within BACOVA_04032at 365.608 kb on + strandat 365.608 kb on + strandat 365.609 kb on - strandat 365.627 kb on - strandat 365.635 kb on + strandat 365.644 kb on + strandat 365.644 kb on + strandat 365.645 kb on - strandat 365.647 kb on + strandat 365.648 kb on - strandat 365.648 kb on - strandat 365.702 kb on - strandat 365.704 kb on + strandat 365.709 kb on + strandat 365.768 kb on + strandat 365.769 kb on - strandat 365.810 kb on + strand, within BACOVA_04033at 365.811 kb on - strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.842 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.919 kb on - strandat 365.919 kb on - strandat 365.987 kb on - strandat 365.990 kb on + strandat 365.991 kb on - strandat 365.991 kb on - strandat 365.992 kb on + strandat 366.020 kb on - strandat 366.024 kb on - strandat 366.024 kb on - strandat 366.053 kb on - strand, within BACOVA_04034at 366.084 kb on + strand, within BACOVA_04034at 366.104 kb on + strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.120 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.147 kb on - strand, within BACOVA_04034at 366.148 kb on + strand, within BACOVA_04034at 366.149 kb on - strand, within BACOVA_04034at 366.221 kb on - strand, within BACOVA_04034at 366.258 kb on + strand, within BACOVA_04034at 366.259 kb on - strand, within BACOVA_04034at 366.365 kb on - strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.473 kb on + strand, within BACOVA_04034at 366.487 kb on + strand, within BACOVA_04034at 366.523 kb on + strand, within BACOVA_04034at 366.524 kb on - strand, within BACOVA_04034at 366.580 kb on + strandat 366.588 kb on - strandat 366.591 kb on + strandat 366.592 kb on - strandat 366.600 kb on - strandat 366.605 kb on + strandat 366.609 kb on - strandat 366.611 kb on + strandat 366.636 kb on + strandat 366.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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363,532 + BACOVA_04030 0.16 -2.1
363,532 + BACOVA_04030 0.16 -1.5
363,533 - BACOVA_04030 0.16 -1.2
363,556 + BACOVA_04030 0.18 -0.7
363,557 - BACOVA_04030 0.19 -1.7
363,663 + BACOVA_04030 0.30 -1.0
363,729 + BACOVA_04030 0.37 -0.2
363,729 + BACOVA_04030 0.37 -2.0
363,730 - BACOVA_04030 0.37 -1.0
363,731 + BACOVA_04030 0.37 -0.7
363,731 + BACOVA_04030 0.37 -1.5
363,731 + BACOVA_04030 0.37 -3.2
363,793 + BACOVA_04030 0.44 -2.6
363,793 + BACOVA_04030 0.44 -1.3
363,825 + BACOVA_04030 0.48 -2.8
363,866 + BACOVA_04030 0.52 -0.7
363,867 - BACOVA_04030 0.52 -2.7
363,867 - BACOVA_04030 0.52 -0.9
363,939 - BACOVA_04030 0.60 +0.1
363,957 + BACOVA_04030 0.62 -0.9
364,036 + BACOVA_04030 0.71 -2.0
364,036 + BACOVA_04030 0.71 -1.8
364,069 + BACOVA_04030 0.74 -2.0
364,070 - BACOVA_04030 0.74 -2.2
364,118 + BACOVA_04030 0.79 -1.5
364,119 - BACOVA_04030 0.80 -1.7
364,120 + BACOVA_04030 0.80 -2.2
364,129 + BACOVA_04030 0.81 -1.8
364,129 + BACOVA_04030 0.81 -0.9
364,130 - BACOVA_04030 0.81 -2.0
364,130 - BACOVA_04030 0.81 +0.1
364,133 - BACOVA_04030 0.81 -2.0
364,192 + BACOVA_04030 0.88 -2.3
364,192 + BACOVA_04030 0.88 -2.7
364,343 + BACOVA_04031 0.42 +0.3
364,344 - BACOVA_04031 0.43 +1.1
364,344 - BACOVA_04031 0.43 -0.9
364,344 - BACOVA_04031 0.43 +0.2
364,348 + BACOVA_04031 0.46 +1.3
364,349 - BACOVA_04031 0.47 -1.1
364,349 - BACOVA_04031 0.47 -1.7
364,351 + BACOVA_04031 0.48 +0.7
364,351 + BACOVA_04031 0.48 -0.8
364,395 + BACOVA_04031 0.83 -1.2
364,399 + BACOVA_04031 0.87 -0.3
364,404 + +1.6
364,405 - -1.3
364,454 + -0.1
364,455 - +0.5
364,463 - -1.3
364,541 + +1.4
364,542 - -1.7
364,607 - BACOVA_04032 0.11 -1.0
364,613 - BACOVA_04032 0.12 -0.3
364,665 - BACOVA_04032 0.16 -1.2
364,665 - BACOVA_04032 0.16 +0.6
364,670 - BACOVA_04032 0.16 +0.3
364,736 + BACOVA_04032 0.21 -0.9
364,739 + BACOVA_04032 0.22 +1.1
364,739 + BACOVA_04032 0.22 -0.1
364,741 + BACOVA_04032 0.22 -1.7
364,741 + BACOVA_04032 0.22 -0.3
364,742 - BACOVA_04032 0.22 -1.0
364,742 - BACOVA_04032 0.22 -0.0
364,742 - BACOVA_04032 0.22 -1.0
364,742 - BACOVA_04032 0.22 +0.1
364,742 - BACOVA_04032 0.22 +0.3
364,745 + BACOVA_04032 0.22 -0.6
364,746 - BACOVA_04032 0.22 -0.9
364,746 - BACOVA_04032 0.22 -0.9
364,796 + BACOVA_04032 0.26 +0.6
364,796 + BACOVA_04032 0.26 +1.5
364,797 - BACOVA_04032 0.26 +0.2
364,810 + BACOVA_04032 0.27 -1.0
364,819 + BACOVA_04032 0.28 -0.9
364,820 - BACOVA_04032 0.28 +0.0
364,841 - BACOVA_04032 0.30 +1.4
364,867 + BACOVA_04032 0.32 -2.5
364,868 - BACOVA_04032 0.32 -3.8
364,878 + BACOVA_04032 0.33 +0.5
364,878 + BACOVA_04032 0.33 -0.6
364,945 + BACOVA_04032 0.38 +0.5
364,945 + BACOVA_04032 0.38 -1.2
364,945 + BACOVA_04032 0.38 -0.2
364,946 - BACOVA_04032 0.38 +0.3
364,958 + BACOVA_04032 0.39 -0.7
364,959 - BACOVA_04032 0.39 -0.1
364,979 + BACOVA_04032 0.41 -1.8
365,015 - BACOVA_04032 0.44 +1.2
365,044 + BACOVA_04032 0.46 -0.7
365,056 + BACOVA_04032 0.47 -0.1
365,057 - BACOVA_04032 0.47 -0.7
365,089 + BACOVA_04032 0.50 +0.8
365,186 + BACOVA_04032 0.57 -1.7
365,234 + BACOVA_04032 0.61 -0.5
365,306 + BACOVA_04032 0.67 +0.1
365,333 + BACOVA_04032 0.69 +1.7
365,333 + BACOVA_04032 0.69 -0.9
365,333 + BACOVA_04032 0.69 -0.1
365,333 + BACOVA_04032 0.69 -0.9
365,334 - BACOVA_04032 0.69 -0.4
365,334 - BACOVA_04032 0.69 +1.1
365,377 + BACOVA_04032 0.73 -0.8
365,411 + BACOVA_04032 0.75 +0.5
365,411 + BACOVA_04032 0.75 -2.1
365,412 - BACOVA_04032 0.76 +0.8
365,412 - BACOVA_04032 0.76 -1.6
365,413 + BACOVA_04032 0.76 -0.9
365,414 - BACOVA_04032 0.76 -0.4
365,428 + BACOVA_04032 0.77 +0.6
365,447 - BACOVA_04032 0.78 +1.0
365,485 + BACOVA_04032 0.81 -1.6
365,486 - BACOVA_04032 0.81 -0.2
365,608 + +0.2
365,608 + +0.1
365,609 - -1.9
365,627 - -0.8
365,635 + -2.4
365,644 + -1.0
365,644 + -0.7
365,645 - +0.3
365,647 + -0.6
365,648 - +0.2
365,648 - +0.9
365,702 - +0.1
365,704 + -0.5
365,709 + +0.4
365,768 + -0.5
365,769 - -0.1
365,810 + BACOVA_04033 0.23 -0.5
365,811 - BACOVA_04033 0.24 -0.4
365,841 + BACOVA_04033 0.47 -1.4
365,841 + BACOVA_04033 0.47 -0.5
365,842 - BACOVA_04033 0.48 +0.5
365,844 - BACOVA_04033 0.50 +1.1
365,844 - BACOVA_04033 0.50 -0.6
365,919 - +1.9
365,919 - -0.6
365,987 - -0.3
365,990 + +1.0
365,991 - +1.4
365,991 - -0.4
365,992 + +1.1
366,020 - +1.4
366,024 - +1.0
366,024 - -1.0
366,053 - BACOVA_04034 0.13 -0.7
366,084 + BACOVA_04034 0.18 +0.4
366,104 + BACOVA_04034 0.21 -0.3
366,117 - BACOVA_04034 0.23 +0.0
366,117 - BACOVA_04034 0.23 +0.3
366,120 - BACOVA_04034 0.24 -0.9
366,136 - BACOVA_04034 0.27 -0.0
366,136 - BACOVA_04034 0.27 -1.5
366,146 + BACOVA_04034 0.28 -0.8
366,146 + BACOVA_04034 0.28 -0.2
366,146 + BACOVA_04034 0.28 -1.0
366,146 + BACOVA_04034 0.28 -1.0
366,147 - BACOVA_04034 0.28 +0.6
366,148 + BACOVA_04034 0.28 -1.7
366,149 - BACOVA_04034 0.29 -0.4
366,221 - BACOVA_04034 0.40 +0.0
366,258 + BACOVA_04034 0.46 +2.2
366,259 - BACOVA_04034 0.46 -1.0
366,365 - BACOVA_04034 0.64 +1.0
366,415 + BACOVA_04034 0.72 +1.1
366,415 + BACOVA_04034 0.72 -1.7
366,473 + BACOVA_04034 0.81 -0.3
366,487 + BACOVA_04034 0.83 -0.5
366,523 + BACOVA_04034 0.89 +0.1
366,524 - BACOVA_04034 0.89 -0.5
366,580 + +1.0
366,588 - +1.5
366,591 + -0.5
366,592 - -1.1
366,600 - -0.3
366,605 + -1.0
366,609 - -1.2
366,611 + -1.6
366,636 + +1.2
366,681 + -1.5

Or see this region's nucleotide sequence