Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04014

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04012 and BACOVA_04013 are separated by 5 nucleotidesBACOVA_04013 and BACOVA_04014 overlap by 4 nucleotidesBACOVA_04014 and BACOVA_04015 overlap by 11 nucleotides BACOVA_04012: BACOVA_04012 - glycosyltransferase, group 2 family protein, at 343,437 to 344,630 _04012 BACOVA_04013: BACOVA_04013 - glycosyltransferase, group 2 family protein, at 344,636 to 345,562 _04013 BACOVA_04014: BACOVA_04014 - hypothetical protein, at 345,559 to 346,887 _04014 BACOVA_04015: BACOVA_04015 - hypothetical protein, at 346,877 to 348,994 _04015 Position (kb) 345 346 347Strain fitness (log2 ratio) -2 -1 0 1at 344.566 kb on + strandat 344.566 kb on + strandat 344.567 kb on - strandat 344.574 kb on + strandat 344.575 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.583 kb on + strandat 344.583 kb on + strandat 344.592 kb on + strandat 344.630 kb on + strandat 344.630 kb on + strandat 344.631 kb on - strandat 344.633 kb on + strandat 344.666 kb on - strandat 344.706 kb on + strandat 344.706 kb on + strandat 344.707 kb on - strandat 344.790 kb on - strand, within BACOVA_04013at 344.833 kb on - strand, within BACOVA_04013at 344.867 kb on + strand, within BACOVA_04013at 344.876 kb on + strand, within BACOVA_04013at 344.928 kb on + strand, within BACOVA_04013at 344.933 kb on + strand, within BACOVA_04013at 345.041 kb on - strand, within BACOVA_04013at 345.064 kb on - strand, within BACOVA_04013at 345.137 kb on + strand, within BACOVA_04013at 345.138 kb on - strand, within BACOVA_04013at 345.154 kb on + strand, within BACOVA_04013at 345.171 kb on - strand, within BACOVA_04013at 345.276 kb on + strand, within BACOVA_04013at 345.277 kb on - strand, within BACOVA_04013at 345.277 kb on - strand, within BACOVA_04013at 345.280 kb on + strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.303 kb on + strand, within BACOVA_04013at 345.304 kb on - strand, within BACOVA_04013at 345.304 kb on - strand, within BACOVA_04013at 345.373 kb on + strand, within BACOVA_04013at 345.438 kb on - strand, within BACOVA_04013at 345.519 kb on + strandat 345.529 kb on + strandat 345.533 kb on - strandat 345.540 kb on - strandat 345.540 kb on - strandat 345.586 kb on - strandat 345.645 kb on + strandat 345.680 kb on + strandat 345.680 kb on + strandat 345.680 kb on + strandat 345.681 kb on - strandat 345.681 kb on - strandat 345.681 kb on - strandat 345.681 kb on - strandat 345.793 kb on + strand, within BACOVA_04014at 345.798 kb on + strand, within BACOVA_04014at 345.857 kb on - strand, within BACOVA_04014at 345.857 kb on - strand, within BACOVA_04014at 346.079 kb on + strand, within BACOVA_04014at 346.080 kb on - strand, within BACOVA_04014at 346.135 kb on + strand, within BACOVA_04014at 346.136 kb on - strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.142 kb on - strand, within BACOVA_04014at 346.144 kb on - strand, within BACOVA_04014at 346.189 kb on + strand, within BACOVA_04014at 346.190 kb on - strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.278 kb on - strand, within BACOVA_04014at 346.407 kb on + strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.526 kb on - strand, within BACOVA_04014at 346.585 kb on + strand, within BACOVA_04014at 346.592 kb on - strand, within BACOVA_04014at 346.609 kb on - strand, within BACOVA_04014at 346.689 kb on + strand, within BACOVA_04014at 346.689 kb on + strand, within BACOVA_04014at 346.691 kb on + strand, within BACOVA_04014at 346.740 kb on + strand, within BACOVA_04014at 346.758 kb on + strandat 346.764 kb on + strandat 346.799 kb on - strandat 346.810 kb on + strandat 346.870 kb on + strandat 346.871 kb on - strandat 346.916 kb on - strandat 346.919 kb on + strandat 346.928 kb on + strandat 346.943 kb on - strandat 346.980 kb on - strandat 346.987 kb on + strandat 346.989 kb on + strandat 347.222 kb on + strand, within BACOVA_04015at 347.282 kb on - strand, within BACOVA_04015at 347.308 kb on - strand, within BACOVA_04015at 347.327 kb on + strand, within BACOVA_04015at 347.345 kb on - strand, within BACOVA_04015at 347.414 kb on - strand, within BACOVA_04015at 347.454 kb on - strand, within BACOVA_04015at 347.491 kb on - strand, within BACOVA_04015at 347.544 kb on - strand, within BACOVA_04015at 347.552 kb on - strand, within BACOVA_04015at 347.552 kb on - strand, within BACOVA_04015at 347.633 kb on + strand, within BACOVA_04015at 347.645 kb on - strand, within BACOVA_04015at 347.648 kb on + strand, within BACOVA_04015at 347.799 kb on + strand, within BACOVA_04015at 347.800 kb on - strand, within BACOVA_04015at 347.852 kb on + strand, within BACOVA_04015at 347.853 kb on - strand, within BACOVA_04015

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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344,566 + -1.5
344,566 + +0.4
344,567 - -0.5
344,574 + +0.5
344,575 - -1.0
344,579 - -0.5
344,579 - -0.1
344,579 - +0.2
344,579 - -0.6
344,583 + -1.6
344,583 + -0.1
344,592 + +0.7
344,630 + +1.0
344,630 + -1.1
344,631 - -0.3
344,633 + -0.1
344,666 - -0.4
344,706 + +1.1
344,706 + +0.2
344,707 - +0.7
344,790 - BACOVA_04013 0.17 -0.0
344,833 - BACOVA_04013 0.21 -0.6
344,867 + BACOVA_04013 0.25 -0.9
344,876 + BACOVA_04013 0.26 -0.8
344,928 + BACOVA_04013 0.31 -1.4
344,933 + BACOVA_04013 0.32 -1.2
345,041 - BACOVA_04013 0.44 +0.3
345,064 - BACOVA_04013 0.46 -0.4
345,137 + BACOVA_04013 0.54 -2.0
345,138 - BACOVA_04013 0.54 -1.2
345,154 + BACOVA_04013 0.56 +0.8
345,171 - BACOVA_04013 0.58 -0.7
345,276 + BACOVA_04013 0.69 +1.1
345,277 - BACOVA_04013 0.69 -0.6
345,277 - BACOVA_04013 0.69 -0.2
345,280 + BACOVA_04013 0.69 +0.1
345,281 - BACOVA_04013 0.70 -0.1
345,281 - BACOVA_04013 0.70 -0.9
345,281 - BACOVA_04013 0.70 +1.3
345,281 - BACOVA_04013 0.70 -0.7
345,303 + BACOVA_04013 0.72 +0.9
345,304 - BACOVA_04013 0.72 -0.8
345,304 - BACOVA_04013 0.72 -0.0
345,373 + BACOVA_04013 0.80 -0.0
345,438 - BACOVA_04013 0.87 +1.0
345,519 + -0.4
345,529 + +0.1
345,533 - -0.4
345,540 - -1.1
345,540 - -0.8
345,586 - +0.2
345,645 + -0.2
345,680 + -0.7
345,680 + +1.5
345,680 + +0.5
345,681 - +0.5
345,681 - -0.7
345,681 - -0.1
345,681 - +0.5
345,793 + BACOVA_04014 0.18 -0.4
345,798 + BACOVA_04014 0.18 -0.0
345,857 - BACOVA_04014 0.22 -2.0
345,857 - BACOVA_04014 0.22 +0.1
346,079 + BACOVA_04014 0.39 -0.1
346,080 - BACOVA_04014 0.39 -1.3
346,135 + BACOVA_04014 0.43 +0.1
346,136 - BACOVA_04014 0.43 -0.7
346,141 + BACOVA_04014 0.44 -1.0
346,141 + BACOVA_04014 0.44 -0.3
346,142 - BACOVA_04014 0.44 -0.8
346,144 - BACOVA_04014 0.44 -0.8
346,189 + BACOVA_04014 0.47 -0.9
346,190 - BACOVA_04014 0.47 +1.1
346,277 + BACOVA_04014 0.54 +0.5
346,277 + BACOVA_04014 0.54 +1.0
346,278 - BACOVA_04014 0.54 -1.8
346,407 + BACOVA_04014 0.64 -1.2
346,408 - BACOVA_04014 0.64 -1.3
346,408 - BACOVA_04014 0.64 -0.5
346,408 - BACOVA_04014 0.64 +1.3
346,526 - BACOVA_04014 0.73 +0.3
346,585 + BACOVA_04014 0.77 +0.4
346,592 - BACOVA_04014 0.78 -0.7
346,609 - BACOVA_04014 0.79 +0.4
346,689 + BACOVA_04014 0.85 +1.5
346,689 + BACOVA_04014 0.85 -1.2
346,691 + BACOVA_04014 0.85 +0.8
346,740 + BACOVA_04014 0.89 +0.1
346,758 + +0.1
346,764 + +0.5
346,799 - +1.4
346,810 + -1.1
346,870 + -0.6
346,871 - -0.0
346,916 - -0.9
346,919 + -0.5
346,928 + -1.7
346,943 - +0.9
346,980 - +1.3
346,987 + -0.6
346,989 + +0.4
347,222 + BACOVA_04015 0.16 +1.7
347,282 - BACOVA_04015 0.19 +1.1
347,308 - BACOVA_04015 0.20 +0.7
347,327 + BACOVA_04015 0.21 +0.5
347,345 - BACOVA_04015 0.22 +1.1
347,414 - BACOVA_04015 0.25 +0.1
347,454 - BACOVA_04015 0.27 +0.7
347,491 - BACOVA_04015 0.29 -2.5
347,544 - BACOVA_04015 0.31 -0.0
347,552 - BACOVA_04015 0.32 +0.8
347,552 - BACOVA_04015 0.32 +0.2
347,633 + BACOVA_04015 0.36 -0.5
347,645 - BACOVA_04015 0.36 -0.5
347,648 + BACOVA_04015 0.36 -0.9
347,799 + BACOVA_04015 0.44 +1.2
347,800 - BACOVA_04015 0.44 -2.0
347,852 + BACOVA_04015 0.46 +1.5
347,853 - BACOVA_04015 0.46 -1.0

Or see this region's nucleotide sequence