Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03966

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03965 and BACOVA_03966 are separated by 4 nucleotidesBACOVA_03966 and BACOVA_03967 are separated by 88 nucleotidesBACOVA_03967 and BACOVA_03968 are separated by 20 nucleotides BACOVA_03965: BACOVA_03965 - outer membrane efflux protein, at 294,578 to 295,975 _03965 BACOVA_03966: BACOVA_03966 - hypothetical protein, at 295,980 to 296,105 _03966 BACOVA_03967: BACOVA_03967 - hypothetical protein, at 296,194 to 296,430 _03967 BACOVA_03968: BACOVA_03968 - bacterial cytochrome ubiquinol oxidase, at 296,451 to 297,998 _03968 Position (kb) 295 296 297Strain fitness (log2 ratio) -2 -1 0 1 2at 295.063 kb on - strand, within BACOVA_03965at 295.103 kb on + strand, within BACOVA_03965at 295.104 kb on - strand, within BACOVA_03965at 295.108 kb on + strand, within BACOVA_03965at 295.109 kb on - strand, within BACOVA_03965at 295.117 kb on + strand, within BACOVA_03965at 295.150 kb on + strand, within BACOVA_03965at 295.155 kb on + strand, within BACOVA_03965at 295.172 kb on - strand, within BACOVA_03965at 295.187 kb on + strand, within BACOVA_03965at 295.215 kb on + strand, within BACOVA_03965at 295.216 kb on - strand, within BACOVA_03965at 295.216 kb on - strand, within BACOVA_03965at 295.216 kb on - strand, within BACOVA_03965at 295.265 kb on + strand, within BACOVA_03965at 295.420 kb on + strand, within BACOVA_03965at 295.452 kb on + strand, within BACOVA_03965at 295.452 kb on + strand, within BACOVA_03965at 295.467 kb on + strand, within BACOVA_03965at 295.467 kb on + strand, within BACOVA_03965at 295.511 kb on + strand, within BACOVA_03965at 295.571 kb on - strand, within BACOVA_03965at 295.579 kb on + strand, within BACOVA_03965at 295.579 kb on + strand, within BACOVA_03965at 295.579 kb on + strand, within BACOVA_03965at 295.581 kb on + strand, within BACOVA_03965at 295.581 kb on + strand, within BACOVA_03965at 295.608 kb on + strand, within BACOVA_03965at 295.613 kb on - strand, within BACOVA_03965at 295.613 kb on - strand, within BACOVA_03965at 295.621 kb on - strand, within BACOVA_03965at 295.621 kb on - strand, within BACOVA_03965at 295.630 kb on + strand, within BACOVA_03965at 295.634 kb on - strand, within BACOVA_03965at 295.744 kb on + strand, within BACOVA_03965at 295.744 kb on + strand, within BACOVA_03965at 295.876 kb on + strandat 295.907 kb on + strandat 295.921 kb on + strandat 295.922 kb on - strandat 295.958 kb on + strandat 295.959 kb on - strandat 295.969 kb on + strandat 295.975 kb on + strandat 295.976 kb on - strandat 295.976 kb on - strandat 295.989 kb on + strandat 296.008 kb on + strand, within BACOVA_03966at 296.008 kb on + strand, within BACOVA_03966at 296.008 kb on + strand, within BACOVA_03966at 296.008 kb on + strand, within BACOVA_03966at 296.009 kb on - strand, within BACOVA_03966at 296.015 kb on + strand, within BACOVA_03966at 296.017 kb on + strand, within BACOVA_03966at 296.049 kb on - strand, within BACOVA_03966at 296.144 kb on - strandat 296.193 kb on + strandat 296.202 kb on + strandat 296.212 kb on - strandat 296.212 kb on - strandat 296.245 kb on - strand, within BACOVA_03967at 296.248 kb on - strand, within BACOVA_03967at 296.298 kb on + strand, within BACOVA_03967at 296.298 kb on + strand, within BACOVA_03967at 296.313 kb on + strand, within BACOVA_03967at 296.314 kb on - strand, within BACOVA_03967at 296.374 kb on + strand, within BACOVA_03967at 296.374 kb on + strand, within BACOVA_03967at 296.374 kb on + strand, within BACOVA_03967at 296.375 kb on - strand, within BACOVA_03967at 296.393 kb on + strand, within BACOVA_03967at 296.445 kb on - strandat 296.517 kb on + strandat 296.583 kb on + strandat 296.584 kb on - strandat 296.587 kb on - strandat 296.587 kb on - strandat 296.588 kb on + strandat 296.648 kb on - strand, within BACOVA_03968at 296.715 kb on + strand, within BACOVA_03968at 296.735 kb on + strand, within BACOVA_03968at 296.735 kb on + strand, within BACOVA_03968at 296.756 kb on + strand, within BACOVA_03968at 296.765 kb on + strand, within BACOVA_03968at 296.781 kb on - strand, within BACOVA_03968at 296.828 kb on - strand, within BACOVA_03968at 296.831 kb on + strand, within BACOVA_03968at 296.852 kb on + strand, within BACOVA_03968at 296.961 kb on - strand, within BACOVA_03968at 297.081 kb on + strand, within BACOVA_03968at 297.098 kb on + strand, within BACOVA_03968

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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295,063 - BACOVA_03965 0.35 -0.1
295,103 + BACOVA_03965 0.38 -0.1
295,104 - BACOVA_03965 0.38 +1.1
295,108 + BACOVA_03965 0.38 +0.7
295,109 - BACOVA_03965 0.38 +2.2
295,117 + BACOVA_03965 0.39 -0.6
295,150 + BACOVA_03965 0.41 +0.3
295,155 + BACOVA_03965 0.41 +1.2
295,172 - BACOVA_03965 0.42 +1.1
295,187 + BACOVA_03965 0.44 -1.3
295,215 + BACOVA_03965 0.46 +0.2
295,216 - BACOVA_03965 0.46 +0.6
295,216 - BACOVA_03965 0.46 -1.0
295,216 - BACOVA_03965 0.46 +0.3
295,265 + BACOVA_03965 0.49 -0.2
295,420 + BACOVA_03965 0.60 -0.7
295,452 + BACOVA_03965 0.63 -0.1
295,452 + BACOVA_03965 0.63 -1.5
295,467 + BACOVA_03965 0.64 +1.5
295,467 + BACOVA_03965 0.64 +1.3
295,511 + BACOVA_03965 0.67 -0.5
295,571 - BACOVA_03965 0.71 +0.2
295,579 + BACOVA_03965 0.72 +0.6
295,579 + BACOVA_03965 0.72 +0.5
295,579 + BACOVA_03965 0.72 -1.1
295,581 + BACOVA_03965 0.72 +0.1
295,581 + BACOVA_03965 0.72 +0.4
295,608 + BACOVA_03965 0.74 -1.0
295,613 - BACOVA_03965 0.74 +0.5
295,613 - BACOVA_03965 0.74 +0.1
295,621 - BACOVA_03965 0.75 +0.3
295,621 - BACOVA_03965 0.75 +0.4
295,630 + BACOVA_03965 0.75 +1.5
295,634 - BACOVA_03965 0.76 +1.8
295,744 + BACOVA_03965 0.83 +0.1
295,744 + BACOVA_03965 0.83 +0.5
295,876 + -0.5
295,907 + +2.5
295,921 + -0.7
295,922 - -0.3
295,958 + +0.1
295,959 - -0.6
295,969 + -0.9
295,975 + -0.3
295,976 - -1.3
295,976 - +0.4
295,989 + +0.2
296,008 + BACOVA_03966 0.22 -1.6
296,008 + BACOVA_03966 0.22 +2.7
296,008 + BACOVA_03966 0.22 +0.8
296,008 + BACOVA_03966 0.22 -0.1
296,009 - BACOVA_03966 0.23 +0.1
296,015 + BACOVA_03966 0.28 +2.3
296,017 + BACOVA_03966 0.29 +1.4
296,049 - BACOVA_03966 0.55 -1.8
296,144 - -0.7
296,193 + -0.9
296,202 + +0.5
296,212 - +0.9
296,212 - +0.9
296,245 - BACOVA_03967 0.22 +0.3
296,248 - BACOVA_03967 0.23 -1.0
296,298 + BACOVA_03967 0.44 -0.2
296,298 + BACOVA_03967 0.44 +1.2
296,313 + BACOVA_03967 0.50 -1.7
296,314 - BACOVA_03967 0.51 -0.9
296,374 + BACOVA_03967 0.76 +0.5
296,374 + BACOVA_03967 0.76 -1.8
296,374 + BACOVA_03967 0.76 -0.6
296,375 - BACOVA_03967 0.76 +2.1
296,393 + BACOVA_03967 0.84 +0.4
296,445 - -0.7
296,517 + -0.1
296,583 + -1.5
296,584 - -1.4
296,587 - -0.0
296,587 - +0.1
296,588 + -0.6
296,648 - BACOVA_03968 0.13 +1.5
296,715 + BACOVA_03968 0.17 -0.2
296,735 + BACOVA_03968 0.18 -0.9
296,735 + BACOVA_03968 0.18 -0.3
296,756 + BACOVA_03968 0.20 -0.2
296,765 + BACOVA_03968 0.20 +1.5
296,781 - BACOVA_03968 0.21 -0.6
296,828 - BACOVA_03968 0.24 +0.2
296,831 + BACOVA_03968 0.25 -0.1
296,852 + BACOVA_03968 0.26 -0.3
296,961 - BACOVA_03968 0.33 +0.3
297,081 + BACOVA_03968 0.41 +1.9
297,098 + BACOVA_03968 0.42 -0.2

Or see this region's nucleotide sequence