Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03655

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03654 and BACOVA_03655 are separated by 142 nucleotidesBACOVA_03655 and BACOVA_03656 are separated by 209 nucleotides BACOVA_03654: BACOVA_03654 - hypothetical protein, at 488,180 to 489,091 _03654 BACOVA_03655: BACOVA_03655 - ABC transporter, ATP-binding protein, at 489,234 to 491,189 _03655 BACOVA_03656: BACOVA_03656 - peptidase family M13, at 491,399 to 493,435 _03656 Position (kb) 489 490 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 489.057 kb on + strandat 489.072 kb on - strandat 489.107 kb on + strandat 489.112 kb on + strandat 489.158 kb on - strandat 489.162 kb on + strandat 489.162 kb on + strandat 489.170 kb on + strandat 489.170 kb on + strandat 489.174 kb on + strandat 489.174 kb on + strandat 489.177 kb on + strandat 489.177 kb on + strandat 489.185 kb on - strandat 489.306 kb on - strandat 489.371 kb on - strandat 489.371 kb on - strandat 489.407 kb on - strandat 489.424 kb on + strandat 489.424 kb on + strandat 489.435 kb on + strand, within BACOVA_03655at 489.436 kb on - strand, within BACOVA_03655at 489.507 kb on - strand, within BACOVA_03655at 489.508 kb on + strand, within BACOVA_03655at 489.509 kb on - strand, within BACOVA_03655at 489.509 kb on - strand, within BACOVA_03655at 489.567 kb on + strand, within BACOVA_03655at 489.582 kb on + strand, within BACOVA_03655at 489.596 kb on - strand, within BACOVA_03655at 489.596 kb on - strand, within BACOVA_03655at 489.713 kb on + strand, within BACOVA_03655at 489.740 kb on + strand, within BACOVA_03655at 489.741 kb on - strand, within BACOVA_03655at 489.741 kb on - strand, within BACOVA_03655at 489.770 kb on - strand, within BACOVA_03655at 489.828 kb on - strand, within BACOVA_03655at 489.854 kb on + strand, within BACOVA_03655at 489.875 kb on - strand, within BACOVA_03655at 489.875 kb on - strand, within BACOVA_03655at 489.910 kb on + strand, within BACOVA_03655at 489.914 kb on + strand, within BACOVA_03655at 489.936 kb on + strand, within BACOVA_03655at 489.954 kb on + strand, within BACOVA_03655at 489.955 kb on - strand, within BACOVA_03655at 489.967 kb on - strand, within BACOVA_03655at 489.979 kb on + strand, within BACOVA_03655at 490.050 kb on - strand, within BACOVA_03655at 490.161 kb on - strand, within BACOVA_03655at 490.243 kb on - strand, within BACOVA_03655at 490.329 kb on - strand, within BACOVA_03655at 490.329 kb on - strand, within BACOVA_03655at 490.335 kb on - strand, within BACOVA_03655at 490.349 kb on + strand, within BACOVA_03655at 490.350 kb on - strand, within BACOVA_03655at 490.395 kb on - strand, within BACOVA_03655at 490.395 kb on - strand, within BACOVA_03655at 490.456 kb on + strand, within BACOVA_03655at 490.490 kb on + strand, within BACOVA_03655at 490.513 kb on + strand, within BACOVA_03655at 490.513 kb on + strand, within BACOVA_03655at 490.514 kb on - strand, within BACOVA_03655at 490.514 kb on - strand, within BACOVA_03655at 490.601 kb on + strand, within BACOVA_03655at 490.766 kb on - strand, within BACOVA_03655at 490.768 kb on - strand, within BACOVA_03655at 490.808 kb on + strand, within BACOVA_03655at 490.809 kb on - strand, within BACOVA_03655at 490.837 kb on + strand, within BACOVA_03655at 490.838 kb on - strand, within BACOVA_03655at 490.841 kb on + strand, within BACOVA_03655at 490.842 kb on - strand, within BACOVA_03655at 490.904 kb on + strand, within BACOVA_03655at 490.904 kb on + strand, within BACOVA_03655at 490.947 kb on + strand, within BACOVA_03655at 490.948 kb on - strand, within BACOVA_03655at 491.202 kb on - strandat 491.214 kb on + strandat 491.215 kb on - strandat 491.230 kb on + strandat 491.231 kb on - strandat 491.233 kb on - strandat 491.240 kb on + strandat 491.384 kb on - strandat 491.388 kb on - strandat 491.391 kb on + strandat 491.415 kb on - strandat 491.456 kb on - strandat 491.456 kb on - strandat 491.456 kb on - strandat 491.518 kb on + strandat 491.527 kb on + strandat 491.543 kb on + strandat 491.544 kb on - strandat 491.677 kb on + strand, within BACOVA_03656at 491.706 kb on + strand, within BACOVA_03656at 491.707 kb on - strand, within BACOVA_03656at 491.718 kb on - strand, within BACOVA_03656at 491.718 kb on - strand, within BACOVA_03656at 491.820 kb on - strand, within BACOVA_03656at 491.820 kb on - strand, within BACOVA_03656at 491.861 kb on + strand, within BACOVA_03656at 491.862 kb on - strand, within BACOVA_03656at 491.877 kb on + strand, within BACOVA_03656at 491.890 kb on + strand, within BACOVA_03656at 491.908 kb on + strand, within BACOVA_03656at 491.909 kb on - strand, within BACOVA_03656at 491.914 kb on - strand, within BACOVA_03656at 491.914 kb on - strand, within BACOVA_03656at 491.914 kb on - strand, within BACOVA_03656at 491.921 kb on + strand, within BACOVA_03656at 491.957 kb on + strand, within BACOVA_03656at 491.996 kb on - strand, within BACOVA_03656at 491.999 kb on + strand, within BACOVA_03656at 492.049 kb on + strand, within BACOVA_03656at 492.142 kb on + strand, within BACOVA_03656at 492.143 kb on - strand, within BACOVA_03656at 492.143 kb on - strand, within BACOVA_03656at 492.146 kb on + strand, within BACOVA_03656at 492.147 kb on - strand, within BACOVA_03656at 492.187 kb on + strand, within BACOVA_03656

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
remove
489,057 + -0.6
489,072 - -0.1
489,107 + +0.2
489,112 + +0.2
489,158 - -0.5
489,162 + -0.3
489,162 + +0.3
489,170 + +0.2
489,170 + -1.3
489,174 + +0.5
489,174 + -0.3
489,177 + -0.1
489,177 + +1.4
489,185 - +0.5
489,306 - -0.4
489,371 - -1.1
489,371 - -0.3
489,407 - +0.8
489,424 + +1.3
489,424 + +0.1
489,435 + BACOVA_03655 0.10 -1.3
489,436 - BACOVA_03655 0.10 -2.4
489,507 - BACOVA_03655 0.14 -0.9
489,508 + BACOVA_03655 0.14 -1.9
489,509 - BACOVA_03655 0.14 -1.9
489,509 - BACOVA_03655 0.14 +1.1
489,567 + BACOVA_03655 0.17 +0.4
489,582 + BACOVA_03655 0.18 -0.2
489,596 - BACOVA_03655 0.19 -1.0
489,596 - BACOVA_03655 0.19 -0.4
489,713 + BACOVA_03655 0.24 -0.1
489,740 + BACOVA_03655 0.26 +0.0
489,741 - BACOVA_03655 0.26 -0.1
489,741 - BACOVA_03655 0.26 +1.2
489,770 - BACOVA_03655 0.27 -0.5
489,828 - BACOVA_03655 0.30 +0.4
489,854 + BACOVA_03655 0.32 -0.1
489,875 - BACOVA_03655 0.33 -0.7
489,875 - BACOVA_03655 0.33 +0.9
489,910 + BACOVA_03655 0.35 -0.1
489,914 + BACOVA_03655 0.35 +1.4
489,936 + BACOVA_03655 0.36 -1.4
489,954 + BACOVA_03655 0.37 -0.4
489,955 - BACOVA_03655 0.37 +0.2
489,967 - BACOVA_03655 0.37 -0.8
489,979 + BACOVA_03655 0.38 -0.4
490,050 - BACOVA_03655 0.42 -1.3
490,161 - BACOVA_03655 0.47 +0.8
490,243 - BACOVA_03655 0.52 -0.3
490,329 - BACOVA_03655 0.56 -0.3
490,329 - BACOVA_03655 0.56 +0.1
490,335 - BACOVA_03655 0.56 -1.6
490,349 + BACOVA_03655 0.57 -2.0
490,350 - BACOVA_03655 0.57 -0.6
490,395 - BACOVA_03655 0.59 +0.4
490,395 - BACOVA_03655 0.59 -0.8
490,456 + BACOVA_03655 0.62 -0.2
490,490 + BACOVA_03655 0.64 +1.7
490,513 + BACOVA_03655 0.65 +0.2
490,513 + BACOVA_03655 0.65 -0.2
490,514 - BACOVA_03655 0.65 -0.4
490,514 - BACOVA_03655 0.65 -0.5
490,601 + BACOVA_03655 0.70 +0.7
490,766 - BACOVA_03655 0.78 -0.2
490,768 - BACOVA_03655 0.78 +0.6
490,808 + BACOVA_03655 0.80 +0.4
490,809 - BACOVA_03655 0.81 -0.3
490,837 + BACOVA_03655 0.82 -1.3
490,838 - BACOVA_03655 0.82 -3.4
490,841 + BACOVA_03655 0.82 -0.5
490,842 - BACOVA_03655 0.82 -0.3
490,904 + BACOVA_03655 0.85 -0.9
490,904 + BACOVA_03655 0.85 -1.2
490,947 + BACOVA_03655 0.88 +0.1
490,948 - BACOVA_03655 0.88 -1.8
491,202 - -0.3
491,214 + +0.1
491,215 - -0.9
491,230 + +0.5
491,231 - +0.1
491,233 - +1.7
491,240 + +1.1
491,384 - +0.6
491,388 - -0.4
491,391 + -0.3
491,415 - -1.9
491,456 - +0.6
491,456 - +0.6
491,456 - +0.7
491,518 + -0.3
491,527 + +0.1
491,543 + -1.0
491,544 - +0.9
491,677 + BACOVA_03656 0.14 -1.0
491,706 + BACOVA_03656 0.15 -0.9
491,707 - BACOVA_03656 0.15 -0.7
491,718 - BACOVA_03656 0.16 +0.2
491,718 - BACOVA_03656 0.16 +0.9
491,820 - BACOVA_03656 0.21 +0.1
491,820 - BACOVA_03656 0.21 -1.9
491,861 + BACOVA_03656 0.23 -1.9
491,862 - BACOVA_03656 0.23 -0.5
491,877 + BACOVA_03656 0.23 +0.0
491,890 + BACOVA_03656 0.24 +2.4
491,908 + BACOVA_03656 0.25 -0.8
491,909 - BACOVA_03656 0.25 -2.6
491,914 - BACOVA_03656 0.25 -0.6
491,914 - BACOVA_03656 0.25 -0.5
491,914 - BACOVA_03656 0.25 -1.0
491,921 + BACOVA_03656 0.26 +0.6
491,957 + BACOVA_03656 0.27 +0.4
491,996 - BACOVA_03656 0.29 -0.4
491,999 + BACOVA_03656 0.29 -1.0
492,049 + BACOVA_03656 0.32 -2.0
492,142 + BACOVA_03656 0.36 -1.2
492,143 - BACOVA_03656 0.37 -0.4
492,143 - BACOVA_03656 0.37 -1.1
492,146 + BACOVA_03656 0.37 -0.4
492,147 - BACOVA_03656 0.37 +0.0
492,187 + BACOVA_03656 0.39 -1.4

Or see this region's nucleotide sequence